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amrfinder
Young edited this page Feb 14, 2024
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AMRFinderPlus
About: |
NCBI has developed AMRFinderPlus, a tool that identifies AMR genes, resistance-associated point mutations, and select other classes of genes using protein annotations and/or assembled nucleotide sequence. AMRFinderPlus is used in the Pathogen Detection pipeline, and these data are displayed in NCBI’s Isolate Browser. AMRFinderPlus relies on NCBI’s curated Reference Gene Database and curated collection of Hidden Markov Models.
Documentation : https://github.com/ncbi/amr/wiki
Citation : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8208984/
Directory tree:
ncbi-AMRFinderplus/
└── sample_amrfinder_plus.txt
Example file for an individual sample (sample_amrfinder_plus.txt)
Name Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 1220312 1221460 - blaADC-26 extended-spectrum class C beta-lactamase ADC-26 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 383 383 100.00 100.00 383 WP_001211238.1 extended-spectrum class C beta-lactamase ADC-26 NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 1635796 1637271 + amvA multidrug efflux MFS transporter AmvA plus AMR AMR EFFLUX EFFLUX BLASTX 492 492 100.00 98.78 492 ACQ82816.1 multidrug efflux MFS transporter AmvA NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 2227873 2228694 + blaOXA-104 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-104 core AMR AMR BETA-LACTAM CARBAPENEM ALLELEX 274 274 100.00 100.00 274 WP_024433915.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-104 NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 2475404 2476690 + abaF fosfomycin efflux MFS transporter AbaF plus AMR AMR FOSFOMYCIN FOSFOMYCIN EXACTX 429 429 100.00 100.00 429 ABO11759.2 fosfomycin efflux MFS transporter AbaF NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 3332855 3334102 + nreB nickel resistance MFS transporter NreB plus STRESS METAL NICKEL NICKEL BLASTX 416 416 100.00 98.32 416 ADY84088.1 nickel resistance MFS transporter NreB NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 3804664 3805449 - ant(3'')-IIa aminoglycoside nucleotidyltransferase ANT(3'')-IIa core AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN BLASTX 262 262 100.00 98.47 262 WP_001112624.1 aminoglycoside nucleotidyltransferase ANT(3'')-IIa NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043954.1 6961 7785 + blaOXA-72 OXA-24 family carbapenem-hydrolyzing class D beta-lactamase OXA-72 core AMR AMR BETA-LACTAM CARBAPENEM ALLELEX 275 275 100.00 100.00 275 WP_000713530.1 OXA-24 family carbapenem-hydrolyzing class D beta-lactamase OXA-72 NA NA
Example file for a run (amrfinderplus.txt)
Name Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 1220312 1221460 - blaADC-26 extended-spectrum class C beta-lactamase ADC-26 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 383 383 100.00 100.00 383 WP_001211238.1 extended-spectrum class C beta-lactamase ADC-26 NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 1635796 1637271 + amvA multidrug efflux MFS transporter AmvA plus AMR AMR EFFLUX EFFLUX BLASTX 492 492 100.00 98.78 492 ACQ82816.1 multidrug efflux MFS transporter AmvA NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 2227873 2228694 + blaOXA-104 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-104 core AMR AMR BETA-LACTAM CARBAPENEM ALLELEX 274 274 100.00 100.00 274 WP_024433915.1 OXA-51 family carbapenem-hydrolyzing class D beta-lactamase OXA-104 NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 2475404 2476690 + abaF fosfomycin efflux MFS transporter AbaF plus AMR AMR FOSFOMYCIN FOSFOMYCIN EXACTX 429 429 100.00 100.00 429 ABO11759.2 fosfomycin efflux MFS transporter AbaF NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 3332855 3334102 + nreB nickel resistance MFS transporter NreB plus STRESS METAL NICKEL NICKEL BLASTX 416 416 100.00 98.32 416 ADY84088.1 nickel resistance MFS transporter NreB NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043953.1 3804664 3805449 - ant(3'')-IIa aminoglycoside nucleotidyltransferase ANT(3'')-IIa core AMR AMR AMINOGLYCOSIDE SPECTINOMYCIN/STREPTOMYCIN BLASTX 262 262 100.00 98.47 262 WP_001112624.1 aminoglycoside nucleotidyltransferase ANT(3'')-IIa NA NA
Acinetobacter_GCF_008632635.1 NA NZ_CP043954.1 6961 7785 + blaOXA-72 OXA-24 family carbapenem-hydrolyzing class D beta-lactamase OXA-72 core AMR AMR BETA-LACTAM CARBAPENEM ALLELEX 275 275 100.00 100.00 275 WP_000713530.1 OXA-24 family carbapenem-hydrolyzing class D beta-lactamase OXA-72 NA NA
burkholderia_GCF_009586235.1 NA NZ_CP045235.1 1127418 1128800 - norM sodium-coupled multidrug efflux MATE transporter NorM plus AMR AMR EFFLUX EFFLUX BLASTX 461 462 99.78 91.97 461 AAG27731.1 sodium-coupled multidrug efflux MATE transporter NorM NA NA
burkholderia_GCF_009586235.1 NA NZ_CP045236.1 224226 225161 + blaPEN-bcc PEN family class A beta-lactamase, Bcc-type core AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 312 312 100.00 98.40 312 WP_027789588.1 PEN family class A beta-lactamase, Bcc-type NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 2077634 2078758 - blaCMA CMA family class C beta-lactamase core AMR AMR BETA-LACTAM CEPHALOTHIN BLASTX 375 375 100.00 98.13 375 WP_032974004.1 class C beta-lactamase CMA-1 NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3196848 3197414 + hsp20 small heat shock protein sHSP20 plus STRESS HEAT NA NA BLASTX 189 189 100.00 98.94 189 CDY80020.1 small heat shock protein sHSP20 NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3197523 3200369 + clpK heat shock survival AAA family ATPase ClpK plus STRESS HEAT NA NA BLASTX 949 949 100.00 99.16 949 ASF80763.1 heat shock survival AAA family ATPase ClpK NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3202525 3202980 + shsP small heat shock protein sHSP20-GI plus STRESS HEAT NA NA EXACTX 152 152 100.00 100.00 152 ASF80771.1 small heat shock protein sHSP20-GI NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3203006 3203917 + yfdX1 heat resistance protein YfdX1 plus STRESS HEAT NA NA BLASTX 304 304 100.00 99.67 304 APX31172.1 heat resistance protein YfdX1 NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3204022 3204906 + yfdX2 heat resistance protein YfdX2 plus STRESS HEAT NA NA BLASTX 295 295 100.00 98.98 295 ASF80766.1 heat resistance protein YfdX2 NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3204999 3205607 + hdeD-GI heat resistance membrane protein HdeD-GI plus STRESS HEAT NA NA BLASTX 203 203 100.00 98.03 203 APX31174.1 heat resistance membrane protein HdeD-GI NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3206825 3207262 + trxLHR heat resistance system thioredoxin Trx-GI plus STRESS HEAT NA NA BLASTX 146 146 100.00 98.63 146 APX31176.1 heat resistance system thioredoxin Trx-GI NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3207269 3208975 + kefB-GI heat resistance system K+/H+ antiporter KefB-GI plus STRESS HEAT NA NA BLASTX 569 571 99.65 98.59 569 APX31177.1 heat resistance system K+/H+ antiporter KefB-GI NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3208981 3209475 + psi-GI heat resistance protein PsiE-GI plus STRESS HEAT NA NA BLASTX 165 165 100.00 98.18 165 APX31178.1 heat resistance protein PsiE-GI NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013940.1 3995506 3996402 - fieF CDF family cation-efflux transporter FieF plus STRESS METAL NA NA BLASTX 299 300 99.67 86.62 299 BAB89353.1 CDF family cation-efflux transporter FieF NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 20920 21267 + arsR As(III)-sensing metalloregulatory transcriptional repressor ArsR plus STRESS METAL ARSENIC ARSENIC BLASTX 116 116 100.00 98.28 116 AET17094.1 As(III)-sensing metalloregulatory transcriptional repressor ArsR NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 21322 21681 + arsD arsenite efflux transporter metallochaperone ArsD plus STRESS METAL ARSENIC ARSENITE BLASTX 120 120 100.00 90.00 120 AAB09625.1 arsenite efflux transporter metallochaperone ArsD NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 21702 23450 + arsA arsenite efflux transporter ATPase subunit ArsA plus STRESS METAL ARSENIC ARSENITE BLASTX 583 583 100.00 98.46 583 BAA24822.1 arsenite efflux transporter ATPase subunit ArsA NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 23501 24787 + arsB arsenite efflux transporter membrane subunit ArsB plus STRESS METAL ARSENIC ARSENITE BLASTX 429 429 100.00 99.07 429 BAA24823.1 arsenite efflux transporter membrane subunit ArsB NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 24803 25225 + arsC glutaredoxin-dependent arsenate reductase plus STRESS METAL ARSENIC ARSENATE BLASTX 141 141 100.00 99.29 141 BAA24824.1 glutaredoxin-dependent arsenate reductase NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 27765 28196 - pcoE copper resistance system metallochaperone PcoE plus STRESS METAL COPPER COPPER BLASTX 144 144 100.00 94.44 144 CAA58532.1 copper resistance system metallochaperone PcoE NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 28415 29812 - pcoS copper resistance membrane spanning protein PcoS plus STRESS METAL COPPER COPPER BLASTX 466 466 100.00 99.14 466 CAA58530.1 copper resistance membrane spanning protein PcoS NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 29812 30489 - pcoR copper response regulator transcription factor PcoR plus STRESS METAL COPPER COPPER EXACTX 226 226 100.00 100.00 226 CAA58529.1 copper response regulator transcription factor PcoR NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 30547 31473 - pcoD copper resistance inner membrane protein PcoD plus STRESS METAL COPPER COPPER EXACTX 309 309 100.00 100.00 309 CAA58528.1 copper resistance inner membrane protein PcoD NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 31481 31858 - pcoC copper resistance system metallochaperone PcoC plus STRESS METAL COPPER COPPER BLASTX 126 126 100.00 99.21 126 CAA58527.1 copper resistance system metallochaperone PcoC NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 31901 32788 - pcoB copper-binding protein PcoB plus STRESS METAL COPPER COPPER EXACTX 296 296 100.00 100.00 296 CAA58526.1 copper-binding protein PcoB NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 32797 34611 - pcoA multicopper oxidase PcoA plus STRESS METAL COPPER COPPER EXACTX 605 605 100.00 100.00 605 CAA58525.1 multicopper oxidase PcoA NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 36176 38644 - silP Ag(+)-translocating P-type ATPase SilP plus STRESS METAL SILVER SILVER BLASTX 823 824 100.00 98.54 824 AAD11750.1 Ag(+)-translocating P-type ATPase SilP NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 39271 42414 - silA Cu(+)/Ag(+) efflux RND transporter permease subunit SilA plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 1048 1048 100.00 99.43 1048 AAD11749.1 Cu(+)/Ag(+) efflux RND transporter permease subunit SilA NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 42428 43717 - silB Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 430 430 100.00 98.37 430 AAD11748.1 Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 43834 44184 - silF Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 117 117 100.00 99.15 117 KGL71342.1 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 44216 45598 - silC Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 461 461 100.00 97.83 461 SPD96884.1 Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 45788 46465 + silR copper/silver response regulator transcription factor SilR plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 226 226 100.00 97.79 226 SPD96883.1 copper/silver response regulator transcription factor SilR NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 46461 47930 + silS copper/silver sensor histidine kinase SilS plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 490 491 99.80 98.98 490 SPD96882.1 copper/silver sensor histidine kinase SilS NA NA
cronobacter_GCF_001277215.2 NA NZ_CP013942.1 48182 48610 + silE silver-binding protein SilE plus STRESS METAL SILVER SILVER BLASTX 143 143 100.00 80.42 143 AAD11743.1 silver-binding protein SilE NA NA
ecoli_GCA_003019175.1 NA CP027546.1 74956 75777 + cif type III secretion system effector Cif plus VIRULENCE VIRULENCE NA NA BLASTX 274 282 97.16 99.27 274 AAQ07241.1 type III secretion system effector Cif NA NA
ecoli_GCA_003019175.1 NA CP027546.1 80906 81556 - espJ type III secretion system effector ADP-ribosyltransferase EspJ plus VIRULENCE VIRULENCE NA NA EXACTX 217 217 100.00 100.00 217 BAF96525.1 type III secretion system effector ADP-ribosyltransferase EspJ NA NA
ecoli_GCA_003019175.1 NA CP027546.1 356024 356773 - tccP Tir-cytoskeleton coupling protein TccP2 plus VIRULENCE VIRULENCE NA NA BLASTX 250 250 100.00 98.00 250 BAF45439.1 Tir-cytoskeleton coupling protein TccP2 NA NA
ecoli_GCA_003019175.1 NA CP027546.1 409010 409660 - espJ type III secretion system effector ADP-ribosyltransferase EspJ plus VIRULENCE VIRULENCE NA NA BLASTX 217 217 100.00 98.16 217 BAF96525.1 type III secretion system effector ADP-ribosyltransferase EspJ NA NA
ecoli_GCA_003019175.1 NA CP027546.1 476438 476902 - terW tellurium resistance protein TerW plus STRESS METAL TELLURIUM TELLURIUM BLASTX 155 155 100.00 99.35 155 AAC44736.1 tellurium resistance protein TerW NA NA
ecoli_GCA_003019175.1 NA CP027546.1 483475 484053 + terZ tellurium resistance-associated protein TerZ plus STRESS METAL TELLURIUM TELLURIUM BLASTX 193 193 100.00 98.96 193 AAA86846.1 tellurium resistance-associated protein TerZ NA NA
ecoli_GCA_003019175.1 NA CP027546.1 486803 487378 + terD tellurium resistance membrane protein TerD plus STRESS METAL TELLURIUM TELLURIUM BLASTX 192 192 100.00 95.31 192 AAA98292.1 tellurium resistance membrane protein TerD NA NA
ecoli_GCA_003019175.1 NA CP027546.1 489351 491438 - iha bifunctional siderophore receptor/adhesin Iha plus VIRULENCE VIRULENCE NA NA EXACTX 696 696 100.00 100.00 696 AAG55323.1 bifunctional siderophore receptor/adhesin Iha NA NA
ecoli_GCA_003019175.1 NA CP027546.1 627101 627364 + ariR biofilm/acid-resistance regulator AriR plus STRESS ACID NA NA EXACTX 88 88 100.00 100.00 88 AAC74250.1 biofilm/acid-resistance regulator AriR NA NA
ecoli_GCA_003019175.1 NA CP027546.1 978549 979532 - nleC type III secretion system effector zinc metalloprotease NleC plus VIRULENCE VIRULENCE NA NA BLASTX 328 328 100.00 99.70 328 BAI25473.1 type III secretion system effector zinc metalloprotease NleC NA NA
ecoli_GCA_003019175.1 NA CP027546.1 1134783 1135835 + nleA type III secretion system effector NleA plus VIRULENCE VIRULENCE NA NA PARTIALX 351 441 79.59 99.43 351 AAK16940.1 type III secretion system effector NleA NA NA
ecoli_GCA_003019175.1 NA CP027546.1 1171560 1171826 - stxB1a Shiga toxin Stx1a subunit B plus VIRULENCE VIRULENCE STX1 STX1A EXACTX 89 89 100.00 100.00 89 AAA71894.1 Shiga toxin Stx1a subunit B NA NA
ecoli_GCA_003019175.1 NA CP027546.1 1171839 1172783 - stxA1a Shiga toxin Stx1a subunit A plus VIRULENCE VIRULENCE STX1 STX1A BLASTX 315 315 100.00 99.68 315 AAA71893.1 Shiga toxin Stx1a subunit A NA NA
ecoli_GCA_003019175.1 NA CP027546.1 1201169 1202527 + espK type III secretion system effector EspK plus VIRULENCE VIRULENCE NA NA BLASTX 453 453 100.00 95.81 453 BAB34991.1 type III secretion system effector EspK NA NA
ecoli_GCA_003019175.1 NA CP027546.1 1747045 1748844 - ybtQ yersiniabactin ABC transporter ATP-binding/permease protein YbtQ plus VIRULENCE VIRULENCE NA NA BLASTX 600 600 100.00 99.50 600 AAC69584.1 yersiniabactin ABC transporter ATP-binding/permease protein YbtQ NA NA
ecoli_GCA_003019175.1 NA CP027546.1 1748834 1750633 - ybtP yersiniabactin ABC transporter ATP-binding/permease protein YbtP plus VIRULENCE VIRULENCE NA NA BLASTX 600 600 100.00 99.17 600 CAA21388.1 yersiniabactin ABC transporter ATP-binding/permease protein YbtP NA NA
ecoli_GCA_003019175.1 NA CP027546.1 2073893 2075212 + nleA type III secretion system effector NleA plus VIRULENCE VIRULENCE NA NA EXACTX 440 440 100.00 100.00 440 CAM11321.1 type III secretion system effector NleA NA NA
ecoli_GCA_003019175.1 NA CP027546.1 2101325 2101615 + iss increased serum survival lipoprotein Iss plus VIRULENCE VIRULENCE NA NA EXACTX 97 97 100.00 100.00 97 CAR12622.1 increased serum survival lipoprotein Iss NA NA
ecoli_GCA_003019175.1 NA CP027546.1 2139498 2140853 - glpT_E448K Escherichia fosfomycin resistant GlpT core AMR POINT FOSFOMYCIN FOSFOMYCIN POINTX 452 452 100.00 99.78 452 WP_000948731.1 glycerol-3-phosphate transporter GlpT NA NA
ecoli_GCA_003019175.1 NA CP027546.1 2995728 2997815 + iha bifunctional siderophore receptor/adhesin Iha plus VIRULENCE VIRULENCE NA NA EXACTX 696 696 100.00 100.00 696 BAI27255.1 bifunctional siderophore receptor/adhesin Iha NA NA
ecoli_GCA_003019175.1 NA CP027546.1 3311942 3315043 + acrF multidrug efflux RND transporter permease subunit AcrF plus AMR AMR EFFLUX EFFLUX BLASTX 1034 1034 100.00 99.61 1034 AAC76298.1 multidrug efflux RND transporter permease subunit AcrF NA NA
ecoli_GCA_003019175.1 NA CP027546.1 3603832 3604353 - lpfA long polar fimbria major subunit LpfA plus VIRULENCE VIRULENCE NA NA EXACTX 174 174 100.00 100.00 174 CAV00478.1 long polar fimbria major subunit LpfA NA NA
ecoli_GCA_003019175.1 NA CP027546.1 3826237 3826806 - lpfA-O113 long polar fimbria major subunit LpfA-O113 plus VIRULENCE VIRULENCE NA NA EXACTX 190 190 100.00 100.00 190 AAT76975.1 long polar fimbria major subunit LpfA-O113 NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4260341 4261429 - pmrB_Y358N Escherichia colistin resistant PmrB core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.45 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4313649 4315262 + tir type III secretion system LEE translocated intimin receptor Tir plus VIRULENCE VIRULENCE NA NA BLASTX 538 538 100.00 99.81 538 AAC15683.1 type III secretion system LEE translocated intimin receptor Tir NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4315978 4318746 + eae intimin type beta plus VIRULENCE VIRULENCE INTIMIN BETA INTERNAL_STOP 923 939 98.30 98.92 923 ACM67157.1 intimin type beta NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4321440 4322015 + espA type III secretion system LEE translocon filament protein EspA plus VIRULENCE VIRULENCE NA NA EXACTX 192 192 100.00 100.00 192 CAR47993.1 type III secretion system LEE translocon filament protein EspA NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4323194 4324135 + espB type III secretion system LEE translocon pore-forming subunit EspB plus VIRULENCE VIRULENCE NA NA EXACTX 314 314 100.00 100.00 314 AAC82360.1 type III secretion system LEE translocon pore-forming subunit EspB NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4325310 4325930 + espF type III secretion system LEE effector EspF plus VIRULENCE VIRULENCE NA NA EXACTX 207 207 100.00 100.00 207 AAF03351.1 type III secretion system LEE effector EspF NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4326871 4336539 - efa1 lymphostatin Efa1/LifA plus VIRULENCE VIRULENCE NA NA EXACTX 3223 3223 100.00 100.00 3223 CAC81883.1 lymphostatin Efa1/LifA NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4339143 4340129 - nleB type III secretion system effector arginine glycosyltransferase NleB plus VIRULENCE VIRULENCE NA NA EXACTX 329 329 100.00 100.00 329 AAL57565.1 type III secretion system effector arginine glycosyltransferase NleB NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4457445 4458575 + blaEC BlaEC family class C beta-lactamase plus AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 377 377 100.00 98.67 377 WP_063610930.1 extended-spectrum class C beta-lactamase EC-15 NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4573439 4574668 - mdtM multidrug efflux MFS transporter MdtM plus AMR AMR EFFLUX EFFLUX BLASTX 410 410 100.00 97.80 410 AAC77293.1 multidrug efflux MFS transporter MdtM NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4676841 4678259 - espX1 type III secretion system effector EspX1 plus VIRULENCE VIRULENCE NA NA BLASTX 473 473 100.00 91.12 473 ADD54679.1 type III secretion system effector EspX1 NA NA
ecoli_GCA_003019175.1 NA CP027546.1 4997173 5001414 + fdeC inverse autotransporter adhesin FdeC plus VIRULENCE VIRULENCE NA NA BLASTX 1414 1416 99.93 90.81 1415 ABE05822.1 inverse autotransporter adhesin FdeC NA NA
ecoli_GCA_003019175.1 NA CP027546.1 5277105 5277395 - iss increased serum survival lipoprotein Iss plus VIRULENCE VIRULENCE NA NA EXACTX 97 97 100.00 100.00 97 CAR12622.1 increased serum survival lipoprotein Iss NA NA
ecoli_GCA_003019175.1 NA CP027547.1 3969 7868 + espP serine protease autotransporter EspP plus VIRULENCE VIRULENCE NA NA BLASTX 1300 1300 100.00 99.92 1300 BAA31836.1 serine protease autotransporter EspP NA NA
ecoli_GCA_003019175.1 NA CP027547.1 29478 31526 - katP catalase/peroxidase KatP plus VIRULENCE VIRULENCE NA NA BLASTX 683 736 92.80 100.00 683 BAA31832.1 catalase/peroxidase KatP NA NA
ecoli_GCA_003019175.1 NA CP027547.1 51765 60395 + toxB toxin B plus VIRULENCE VIRULENCE NA NA BLASTX 2877 3166 90.87 100.00 2877 BAH24012.1 toxin B NA NA
ecoli_GCA_003019175.1 NA CP027547.1 81219 83177 - ehxA enterohemolysin EhxA plus VIRULENCE VIRULENCE NA NA PARTIALX 653 998 65.43 100.00 653 ADZ45128.1 enterohemolysin EhxA NA NA
ecoli_GCA_009738455.1 NA CP046526.1 2306 5299 + ehxA enterohemolysin EhxA plus VIRULENCE VIRULENCE NA NA BLASTX 998 998 100.00 99.90 998 BAA31774.1 enterohemolysin EhxA NA NA
ecoli_GCA_009738455.1 NA CP046526.1 40868 50374 + toxB toxin B plus VIRULENCE VIRULENCE NA NA BLASTX 3169 3169 100.00 99.94 3169 BAA31815.1 toxin B NA NA
ecoli_GCA_009738455.1 NA CP046526.1 61775 63982 + katP catalase/peroxidase KatP plus VIRULENCE VIRULENCE NA NA EXACTX 736 736 100.00 100.00 736 BAA31832.1 catalase/peroxidase KatP NA NA
ecoli_GCA_009738455.1 NA CP046526.1 65644 69543 + espP serine protease autotransporter EspP plus VIRULENCE VIRULENCE NA NA EXACTX 1300 1300 100.00 100.00 1300 BAA31836.1 serine protease autotransporter EspP NA NA
ecoli_GCA_009738455.1 NA CP046526.1 83510 85474 + etpD variant type II secretion system secretin EtpD plus VIRULENCE VIRULENCE NA NA BLASTX 655 656 99.85 94.50 655 BAI33940.1 variant type II secretion system secretin EtpD NA NA
ecoli_GCA_009738455.1 NA CP046526.1 96657 98303 + ehxA enterohemolysin EhxA plus VIRULENCE VIRULENCE NA NA PARTIAL_CONTIG_ENDX 549 998 55.01 99.82 549 BAA31774.1 enterohemolysin EhxA NA NA
ecoli_GCA_009738455.1 NA CP046527.1 11703 12032 - emrE multidrug efflux SMR transporter EmrE plus STRESS BIOCIDE EFFLUX EFFLUX BLASTX 110 110 100.00 98.18 110 CAA77936.1 multidrug efflux SMR transporter EmrE NA NA
ecoli_GCA_009738455.1 NA CP046527.1 162912 164267 - glpT_E448K Escherichia fosfomycin resistant GlpT core AMR POINT FOSFOMYCIN FOSFOMYCIN POINTX 452 452 100.00 99.12 452 WP_000948731.1 glycerol-3-phosphate transporter GlpT NA NA
ecoli_GCA_009738455.1 NA CP046527.1 312169 312435 - stxB2a Shiga toxin Stx2a subunit B plus VIRULENCE VIRULENCE STX2 STX2A EXACTX 89 89 100.00 100.00 89 CAA30715.1 Shiga toxin Stx2a subunit B NA NA
ecoli_GCA_009738455.1 NA CP046527.1 312450 313406 - stxA2c Shiga toxin Stx2c subunit A plus VIRULENCE VIRULENCE STX2 STX2C EXACTX 319 319 100.00 100.00 319 CAA30714.1 Shiga toxin Stx2c subunit A NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1009020 1010006 + nleB type III secretion system effector arginine glycosyltransferase NleB plus VIRULENCE VIRULENCE NA NA EXACTX 329 329 100.00 100.00 329 BAB37280.1 type III secretion system effector arginine glycosyltransferase NleB NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1294083 1296365 + acrF multidrug efflux RND transporter permease subunit AcrF plus AMR AMR EFFLUX EFFLUX INTERNAL_STOP 761 1034 72.15 96.58 761 AAC76298.1 multidrug efflux RND transporter permease subunit AcrF NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1604199 1604732 - lpfA1 long polar fimbria major subunit LpfA1 plus VIRULENCE VIRULENCE NA NA EXACTX 178 178 100.00 100.00 178 OPH66324.1 long polar fimbria major subunit LpfA1 NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1735944 1736687 - espF type III secretion system LEE effector EspF plus VIRULENCE VIRULENCE NA NA EXACTX 248 248 100.00 100.00 248 AAG58814.1 type III secretion system LEE effector EspF NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1737730 1738665 - espB type III secretion system LEE translocon pore-forming subunit EspB plus VIRULENCE VIRULENCE NA NA EXACTX 312 312 100.00 100.00 312 AAG58818.1 type III secretion system LEE translocon pore-forming subunit EspB NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1739826 1740401 - espA type III secretion system LEE translocon filament protein EspA plus VIRULENCE VIRULENCE NA NA EXACTX 192 192 100.00 100.00 192 CAA73506.1 type III secretion system LEE translocon filament protein EspA NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1743145 1745946 - eae intimin type gamma plus VIRULENCE VIRULENCE INTIMIN GAMMA BLASTX 934 934 100.00 99.79 934 ACM67148.1 intimin type gamma NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1746617 1748290 - tir type III secretion system LEE translocated intimin receptor Tir plus VIRULENCE VIRULENCE NA NA EXACTX 558 558 100.00 100.00 558 AAG58825.1 type III secretion system LEE translocated intimin receptor Tir NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1791077 1792264 + emrD multidrug efflux MFS transporter EmrD plus AMR AMR EFFLUX EFFLUX BLASTX 396 396 100.00 99.49 396 EFF04178.1 multidrug efflux MFS transporter EmrD NA NA
ecoli_GCA_009738455.1 NA CP046527.1 1850662 1851261 - lpfA2 long polar fimbria major subunit LpfA2 plus VIRULENCE VIRULENCE NA NA EXACTX 200 200 100.00 100.00 200 BAB38093.1 long polar fimbria major subunit LpfA2 NA NA
ecoli_GCA_009738455.1 NA CP046527.1 2305436 2306524 - pmrB_Y358N Escherichia colistin resistant PmrB core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.17 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
ecoli_GCA_009738455.1 NA CP046527.1 2350897 2352027 - blaEC BlaEC family class C beta-lactamase plus AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 377 377 100.00 98.14 377 WP_063610930.1 extended-spectrum class C beta-lactamase EC-15 NA NA
ecoli_GCA_009738455.1 NA CP046527.1 2547634 2548863 - mdtM multidrug efflux MFS transporter MdtM plus AMR AMR EFFLUX EFFLUX BLASTX 410 410 100.00 98.05 410 AAC77293.1 multidrug efflux MFS transporter MdtM NA NA
ecoli_GCA_009738455.1 NA CP046527.1 2639012 2640430 - espX1 type III secretion system effector EspX1 plus VIRULENCE VIRULENCE NA NA BLASTX 473 473 100.00 99.79 473 ADD54679.1 type III secretion system effector EspX1 NA NA
ecoli_GCA_009738455.1 NA CP046527.1 2976101 2980342 + fdeC inverse autotransporter adhesin FdeC plus VIRULENCE VIRULENCE NA NA BLASTX 1414 1416 99.93 92.23 1415 ABE05822.1 inverse autotransporter adhesin FdeC NA NA
ecoli_GCA_009738455.1 NA CP046527.1 3546556 3547533 + nleB2 type III secretion system effector arginine glycosyltransferase NleB2 plus VIRULENCE VIRULENCE NA NA EXACTX 326 326 100.00 100.00 326 CAS08589.1 type III secretion system effector arginine glycosyltransferase NleB2 NA NA
ecoli_GCA_009738455.1 NA CP046527.1 3547597 3548586 + nleC type III secretion system effector zinc metalloprotease NleC plus VIRULENCE VIRULENCE NA NA EXACTX 330 330 100.00 100.00 330 AAG55141.1 type III secretion system effector zinc metalloprotease NleC NA NA
ecoli_GCA_009738455.1 NA CP046527.1 3831413 3832423 - tccP Tir-cytoskeleton coupling protein TccP2 plus VIRULENCE VIRULENCE NA NA BLASTX 337 344 97.97 100.00 337 AFM31243.1 Tir-cytoskeleton coupling protein TccP2 NA NA
ecoli_GCA_009738455.1 NA CP046527.1 3966312 3966776 - terW tellurium resistance protein TerW plus STRESS METAL TELLURIUM TELLURIUM BLASTX 155 155 100.00 99.35 155 AAC44736.1 tellurium resistance protein TerW NA NA
ecoli_GCA_009738455.1 NA CP046527.1 3973349 3973927 + terZ tellurium resistance-associated protein TerZ plus STRESS METAL TELLURIUM TELLURIUM BLASTX 193 193 100.00 98.96 193 AAA86846.1 tellurium resistance-associated protein TerZ NA NA
ecoli_GCA_009738455.1 NA CP046527.1 3976677 3977252 + terD tellurium resistance membrane protein TerD plus STRESS METAL TELLURIUM TELLURIUM BLASTX 192 192 100.00 95.31 192 AAA98292.1 tellurium resistance membrane protein TerD NA NA
ecoli_GCA_009738455.1 NA CP046527.1 3979225 3981312 - iha bifunctional siderophore receptor/adhesin Iha plus VIRULENCE VIRULENCE NA NA EXACTX 696 696 100.00 100.00 696 AAG55323.1 bifunctional siderophore receptor/adhesin Iha NA NA
ecoli_GCA_009738455.1 NA CP046527.1 4146349 4147707 - espK type III secretion system effector EspK plus VIRULENCE VIRULENCE NA NA EXACTX 453 453 100.00 100.00 453 BAB34991.1 type III secretion system effector EspK NA NA
ecoli_GCA_009738455.1 NA CP046527.1 4175518 4175847 + emrE multidrug efflux SMR transporter EmrE plus STRESS BIOCIDE EFFLUX EFFLUX BLASTX 110 110 100.00 98.18 110 CAA77936.1 multidrug efflux SMR transporter EmrE NA NA
ecoli_GCA_009738455.1 NA CP046527.1 4339092 4340414 - nleA type III secretion system effector NleA plus VIRULENCE VIRULENCE NA NA EXACTX 441 441 100.00 100.00 441 AAK16940.1 type III secretion system effector NleA NA NA
ecoli_GCA_009738455.1 NA CP046527.1 5172470 5173120 + espJ type III secretion system effector ADP-ribosyltransferase EspJ plus VIRULENCE VIRULENCE NA NA EXACTX 217 217 100.00 100.00 217 AAG56990.1 type III secretion system effector ADP-ribosyltransferase EspJ NA NA
ecoli_GCA_009738455.1 NA CP046527.1 5173448 5174458 + tccP Tir-cytoskeleton coupling protein TccP plus VIRULENCE VIRULENCE NA NA EXACTX 337 337 100.00 100.00 337 ACT72391.1 Tir-cytoskeleton coupling protein TccP NA NA
ecoli_GCA_009738455.1 NA CP046527.1 5292497 5292763 - stxB2c Shiga toxin Stx2c subunit B plus VIRULENCE VIRULENCE STX2 STX2C EXACTX 89 89 100.00 100.00 89 BAB68370.1 Shiga toxin Stx2c subunit B NA NA
ecoli_GCA_009738455.1 NA CP046527.1 5292778 5293734 - stxA2c Shiga toxin Stx2c subunit A plus VIRULENCE VIRULENCE STX2 STX2C EXACTX 319 319 100.00 100.00 319 AAS07596.1 Shiga toxin Stx2c subunit A NA NA
ecoli_GCA_023823105.1 NA CP090402.1 29132 30319 - emrD multidrug efflux MFS transporter EmrD plus AMR AMR EFFLUX EFFLUX BLASTX 396 396 100.00 99.49 396 EFF04178.1 multidrug efflux MFS transporter EmrD NA NA
ecoli_GCA_023823105.1 NA CP090402.1 48183 58424 + air inverse autotransporter adhesin EaeX/Air plus VIRULENCE VIRULENCE NA NA BLASTX 3414 3418 100.00 87.69 3421 CAR15326.1 inverse autotransporter adhesin EaeX/Air NA NA
ecoli_GCA_023823105.1 NA CP090402.1 58480 60174 - eilA HilA family transcriptional regulator EilA plus VIRULENCE VIRULENCE NA NA BLASTX 565 565 100.00 99.29 565 ACB16655.1 HilA family transcriptional regulator EilA NA NA
ecoli_GCA_023823105.1 NA CP090402.1 504681 507782 - acrF multidrug efflux RND transporter permease subunit AcrF plus AMR AMR EFFLUX EFFLUX BLASTX 1034 1034 100.00 99.23 1034 AAC76298.1 multidrug efflux RND transporter permease subunit AcrF NA NA
ecoli_GCA_023823105.1 NA CP090402.1 1154077 1155219 + blaCMY-2 extended-spectrum class C beta-lactamase CMY-2 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 381 381 100.00 100.00 381 WP_000976514.1 extended-spectrum class C beta-lactamase CMY-2 NA NA
ecoli_GCA_023823105.1 NA CP090402.1 1628746 1630101 + glpT_E448K Escherichia fosfomycin resistant GlpT core AMR POINT FOSFOMYCIN FOSFOMYCIN POINTX 452 452 100.00 98.89 452 WP_000948731.1 glycerol-3-phosphate transporter GlpT NA NA
ecoli_GCA_023823105.1 NA CP090402.1 2716076 2716339 - ariR biofilm/acid-resistance regulator AriR plus STRESS ACID NA NA BLASTX 88 88 100.00 97.73 88 AAC74250.1 biofilm/acid-resistance regulator AriR NA NA
ecoli_GCA_023823105.1 NA CP090402.1 3628925 3633172 - fdeC inverse autotransporter adhesin FdeC plus VIRULENCE VIRULENCE NA NA BLASTX 1416 1416 100.00 95.34 1416 ABE05822.1 inverse autotransporter adhesin FdeC NA NA
ecoli_GCA_023823105.1 NA CP090402.1 3946714 3948132 + espX1 type III secretion system effector EspX1 plus VIRULENCE VIRULENCE NA NA BLASTX 473 473 100.00 89.01 473 ADD54679.1 type III secretion system effector EspX1 NA NA
ecoli_GCA_023823105.1 NA CP090402.1 4046604 4047833 + mdtM multidrug efflux MFS transporter MdtM plus AMR AMR EFFLUX EFFLUX BLASTX 410 410 100.00 97.56 410 AAC77293.1 multidrug efflux MFS transporter MdtM NA NA
ecoli_GCA_023823105.1 NA CP090402.1 4231120 4232250 + blaEC BlaEC family class C beta-lactamase plus AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 377 377 100.00 99.73 377 AAZ85968.1 cephalosporin-hydrolyzing class C beta-lactamase EC-8 NA NA
ecoli_GCA_023823105.1 NA CP090403.1 72296 73438 - blaCMY-2 extended-spectrum class C beta-lactamase CMY-2 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 381 381 100.00 100.00 381 WP_000976514.1 extended-spectrum class C beta-lactamase CMY-2 NA NA
ecoli_GCA_023823105.1 NA CP090404.1 77053 77925 - blaCTX-M-14 extended-spectrum class A beta-lactamase CTX-M-14 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_001617865.1 extended-spectrum class A beta-lactamase CTX-M-14 NA NA
ecoli_GCA_023823105.1 NA CP090405.1 56142 57764 + mcr-1.1 phosphoethanolamine--lipid A transferase MCR-1.1 core AMR AMR COLISTIN COLISTIN ALLELEX 541 541 100.00 100.00 541 WP_049589868.1 phosphoethanolamine--lipid A transferase MCR-1.1 NA NA
kleb_GCF_000240185.1 NA NC_016838.1 31846 32718 - blaCTX-M-14 extended-spectrum class A beta-lactamase CTX-M-14 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_001617865.1 extended-spectrum class A beta-lactamase CTX-M-14 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 29746 30603 + blaTEM-1 broad-spectrum class A beta-lactamase TEM-1 core AMR AMR BETA-LACTAM BETA-LACTAM ALLELEX 286 286 100.00 100.00 286 WP_000027057.1 broad-spectrum class A beta-lactamase TEM-1 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 30776 31528 + rmtB1 16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1 core AMR AMR AMINOGLYCOSIDE AMINOGLYCOSIDE ALLELEX 251 251 100.00 100.00 251 WP_012372818.1 16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 35240 36412 - tet(G) tetracycline efflux MFS transporter Tet(G) core AMR AMR TETRACYCLINE TETRACYCLINE EXACTX 391 391 100.00 100.00 391 WP_001257840.1 tetracycline efflux MFS transporter Tet(G) NA NA
kleb_GCF_000240185.1 NA NC_016839.1 37352 38563 - floR2 chloramphenicol/florfenicol efflux MFS transporter FloR2 core AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL EXACTX 404 404 100.00 100.00 404 WP_000214125.1 chloramphenicol/florfenicol efflux MFS transporter FloR2 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 39224 39751 - sul1 sulfonamide-resistant dihydropteroate synthase Sul1 core AMR AMR SULFONAMIDE SULFONAMIDE PARTIALX 176 275 64.00 100.00 176 WP_063855066.1 sulfonamide-resistant dihydropteroate synthase Sul1 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 39748 40092 - qacEdelta1 quaternary ammonium compound efflux SMR transporter QacE delta 1 core STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM ALLELEX 115 115 100.00 100.00 115 WP_000679427.1 quaternary ammonium compound efflux SMR transporter QacE delta 1 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 40259 41047 - aadA2 ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN EXACTX 263 263 100.00 100.00 263 WP_001206356.1 ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 41521 41949 - dfrA12 trimethoprim-resistant dihydrofolate reductase DfrA12 core AMR AMR TRIMETHOPRIM TRIMETHOPRIM PARTIALX 143 165 86.67 97.20 143 WP_001083725.1 trimethoprim-resistant dihydrofolate reductase DfrA12 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 44152 44847 + aac(3)-IId aminoglycoside N-acetyltransferase AAC(3)-IId core AMR AMR AMINOGLYCOSIDE GENTAMICIN PARTIALX 232 286 81.12 100.00 232 WP_000557454.1 aminoglycoside N-acetyltransferase AAC(3)-IId NA NA
kleb_GCF_000240185.1 NA NC_016839.1 49820 50677 + blaTEM-1 broad-spectrum class A beta-lactamase TEM-1 core AMR AMR BETA-LACTAM BETA-LACTAM ALLELEX 286 286 100.00 100.00 286 WP_000027057.1 broad-spectrum class A beta-lactamase TEM-1 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 51098 51931 - aph(6)-Id aminoglycoside O-phosphotransferase APH(6)-Id core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN EXACTX 278 278 100.00 100.00 278 WP_000480968.1 aminoglycoside O-phosphotransferase APH(6)-Id NA NA
kleb_GCF_000240185.1 NA NC_016839.1 51934 52734 - aph(3'')-Ib aminoglycoside O-phosphotransferase APH(3'')-Ib core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN EXACTX 267 267 100.00 100.00 267 WP_001082319.1 aminoglycoside O-phosphotransferase APH(3'')-Ib NA NA
kleb_GCF_000240185.1 NA NC_016839.1 52798 53610 - sul2 sulfonamide-resistant dihydropteroate synthase Sul2 core AMR AMR SULFONAMIDE SULFONAMIDE EXACTX 271 271 100.00 100.00 271 WP_001043260.1 sulfonamide-resistant dihydropteroate synthase Sul2 NA NA
kleb_GCF_000240185.1 NA NC_016839.1 82527 83399 + blaCTX-M-14 extended-spectrum class A beta-lactamase CTX-M-14 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_001617865.1 extended-spectrum class A beta-lactamase CTX-M-14 NA NA
kleb_GCF_000240185.1 NA NC_016845.1 79884 80783 + fieF CDF family cation-efflux transporter FieF plus STRESS METAL NA NA EXACTX 300 300 100.00 100.00 300 BAB89353.1 CDF family cation-efflux transporter FieF NA NA
kleb_GCF_000240185.1 NA NC_016845.1 646217 646633 + fosA FosA5 family fosfomycin resistance glutathione transferase core AMR AMR FOSFOMYCIN FOSFOMYCIN BLASTX 139 139 100.00 98.56 139 WP_004146118.1 FosA5 family fosfomycin resistance glutathione transferase NA NA
kleb_GCF_000240185.1 NA NC_016845.1 1694396 1695427 - pmrB_R256G Klebsiella pneumoniae colistin resistant PmrB core AMR POINT COLISTIN COLISTIN POINTX 344 365 94.25 99.42 344 WP_004179093.1 two-component system sensor histidine kinase PmrB NA NA
kleb_GCF_000240185.1 NA NC_016845.1 2549406 2550263 - blaSHV-11 broad-spectrum class A beta-lactamase SHV-11 core AMR AMR BETA-LACTAM BETA-LACTAM ALLELEX 286 286 100.00 100.00 286 WP_004176269.1 broad-spectrum class A beta-lactamase SHV-11 NA NA
kleb_GCF_000240185.1 NA NC_016845.1 3437781 3439580 - ybtQ yersiniabactin ABC transporter ATP-binding/permease protein YbtQ plus VIRULENCE VIRULENCE NA NA BLASTX 600 600 100.00 99.83 600 AAC69584.1 yersiniabactin ABC transporter ATP-binding/permease protein YbtQ NA NA
kleb_GCF_000240185.1 NA NC_016845.1 3439570 3441369 - ybtP yersiniabactin ABC transporter ATP-binding/permease protein YbtP plus VIRULENCE VIRULENCE NA NA BLASTX 600 600 100.00 99.83 600 CAA21388.1 yersiniabactin ABC transporter ATP-binding/permease protein YbtP NA NA
kleb_GCF_000240185.1 NA NC_016845.1 3736100 3738730 - gyrA_S83I Klebsiella pneumoniae quinolone resistant GyrA core AMR POINT QUINOLONE QUINOLONE POINTX 877 877 100.00 99.77 877 WP_117036963.1 DNA gyrase subunit A GyrA NA NA
kleb_GCF_000240185.1 NA NC_016845.1 4589819 4591861 - parC_S80I Klebsiella pneumoniae quinolone resistant ParC core AMR POINT QUINOLONE QUINOLONE POINTX 681 689 98.84 99.41 681 WP_101982161.1 DNA topoisomerase IV subunit A ParC NA NA
kleb_GCF_000240185.1 NA NC_016845.1 5268974 5270155 + emrD multidrug efflux MFS transporter EmrD plus AMR AMR EFFLUX EFFLUX BLASTX 394 394 100.00 99.24 394 ACN65732.1 multidrug efflux MFS transporter EmrD NA NA
kleb_GCF_000240185.1 NA NC_016846.1 11908 12339 - merR mercury resistance transcriptional regulator MerR plus STRESS METAL MERCURY MERCURY BLASTX 144 144 100.00 93.75 144 CAA77320.1 mercury resistance transcriptional regulator MerR NA NA
kleb_GCF_000240185.1 NA NC_016846.1 12411 12758 + merT mercuric transport protein MerT plus STRESS METAL MERCURY MERCURY EXACTX 116 116 100.00 100.00 116 AAB59075.1 mercuric transport protein MerT NA NA
kleb_GCF_000240185.1 NA NC_016846.1 12775 13047 + merP mercury resistance system periplasmic binding protein MerP plus STRESS METAL MERCURY MERCURY BLASTX 91 91 100.00 90.11 91 AAC38219.1 mercury resistance system periplasmic binding protein MerP NA NA
kleb_GCF_000240185.1 NA NC_016846.1 13086 13505 + merC organomercurial transporter MerC plus STRESS METAL MERCURY ORGANOMERCURY EXACTX 140 140 100.00 100.00 140 AAC33908.1 organomercurial transporter MerC NA NA
kleb_GCF_000240185.1 NA NC_016846.1 20557 21435 + blaKPC-2 carbapenem-hydrolyzing class A beta-lactamase KPC-2 core AMR AMR BETA-LACTAM CARBAPENEM ALLELEX 293 293 100.00 100.00 293 WP_004199234.1 carbapenem-hydrolyzing class A beta-lactamase KPC-2 NA NA
kleb_GCF_000240185.1 NA NC_016846.1 41723 42580 + blaTEM-1 broad-spectrum class A beta-lactamase TEM-1 core AMR AMR BETA-LACTAM BETA-LACTAM ALLELEX 286 286 100.00 100.00 286 WP_000027057.1 broad-spectrum class A beta-lactamase TEM-1 NA NA
kleb_GCF_015139575.1 NA NZ_AP022547.1 28700 29881 - emrD multidrug efflux MFS transporter EmrD plus AMR AMR EFFLUX EFFLUX BLASTX 394 394 100.00 94.67 394 ACN65732.1 multidrug efflux MFS transporter EmrD NA NA
kleb_GCF_015139575.1 NA NZ_AP022547.1 2931291 2933087 + ybtP yersiniabactin ABC transporter ATP-binding/permease protein YbtP plus VIRULENCE VIRULENCE NA NA BLASTX 599 600 99.83 90.48 599 CAA21388.1 yersiniabactin ABC transporter ATP-binding/permease protein YbtP NA NA
kleb_GCF_015139575.1 NA NZ_AP022547.1 2933080 2934879 + ybtQ yersiniabactin ABC transporter ATP-binding/permease protein YbtQ plus VIRULENCE VIRULENCE NA NA BLASTX 600 600 100.00 89.00 600 AAC69584.1 yersiniabactin ABC transporter ATP-binding/permease protein YbtQ NA NA
kleb_GCF_015139575.1 NA NZ_AP022547.1 2960482 2961294 - aph(3')-Ia aminoglycoside O-phosphotransferase APH(3')-Ia core AMR AMR AMINOGLYCOSIDE KANAMYCIN BLASTX 271 271 100.00 98.89 271 WP_012695470.1 aminoglycoside O-phosphotransferase APH(3')-Ia NA NA
kleb_GCF_015139575.1 NA NZ_AP022547.1 3234346 3237495 - oqxB multidrug efflux RND transporter permease subunit OqxB core AMR AMR PHENICOL/QUINOLONE PHENICOL/QUINOLONE BLASTX 1050 1050 100.00 97.05 1050 WP_012967412.1 multidrug efflux RND transporter permease subunit OqxB9 NA NA
kleb_GCF_015139575.1 NA NZ_AP022547.1 3237523 3238695 - oqxA multidrug efflux RND transporter periplasmic adaptor subunit OqxA core AMR AMR PHENICOL/QUINOLONE PHENICOL/QUINOLONE BLASTX 391 391 100.00 91.05 391 WP_002914189.1 multidrug efflux RND transporter periplasmic adaptor subunit OqxA NA NA
kleb_GCF_015139575.1 NA NZ_AP022547.1 4470230 4471102 + blaOXY-1-2 extended-spectrum class A beta-lactamase OXY-1-2 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_025107110.1 extended-spectrum class A beta-lactamase OXY-1-2 NA NA
kleb_GCF_015139575.1 NA NZ_AP022548.1 67910 68782 + blaCTX-M-8 extended-spectrum class A beta-lactamase CTX-M-8 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_032489598.1 extended-spectrum class A beta-lactamase CTX-M-8 NA NA
kleb_GCF_015139575.1 NA NZ_AP022548.1 70855 71727 + blaCTX-M-8 extended-spectrum class A beta-lactamase CTX-M-8 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_032489598.1 extended-spectrum class A beta-lactamase CTX-M-8 NA NA
kleb_GCF_015139575.1 NA NZ_AP022548.1 73800 74672 + blaCTX-M-8 extended-spectrum class A beta-lactamase CTX-M-8 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_032489598.1 extended-spectrum class A beta-lactamase CTX-M-8 NA NA
myco_GCF_000195955.2 NA NC_000962.3 314312 314854 - aac(2')-Ic aminoglycoside N-acetyltransferase AAC(2')-Ic core AMR AMR AMINOGLYCOSIDE GENTAMICIN/TOBRAMYCIN EXACTX 181 181 100.00 100.00 181 WP_003899880.1 aminoglycoside N-acetyltransferase AAC(2')-Ic NA NA
myco_GCF_000195955.2 NA NC_000962.3 2231680 2232216 + erm(37) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(37) core AMR AMR LINCOSAMIDE/MACROLIDE AZITHROMYCIN/CLARITHROMYCIN/CLINDAMYCIN/ERYTHROMYCIN/TELITHROMYCIN EXACTX 179 179 100.00 100.00 179 WP_003900446.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(37) NA NA
myco_GCF_000195955.2 NA NC_000962.3 2325889 2326809 - blaC class A beta-lactamase BlaC core AMR AMR BETA-LACTAM BETA-LACTAM EXACTX 307 307 100.00 100.00 307 WP_003410677.1 class A beta-lactamase BlaC NA NA
ralstonia_GCF_021173085.1 NA NZ_CP076412.1 780723 781535 - blaOXA OXA-60 family carbapenem-hydrolyzing class D beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 271 271 100.00 95.57 271 WP_102607463.1 OXA-60 family carbapenem-hydrolyzing class D beta-lactamase OXA-571 NA NA
ralstonia_GCF_021173085.1 NA NZ_CP076412.1 1040013 1040834 - blaOXA OXA-22 family class D beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 274 275 99.64 96.35 274 WP_154205474.1 OXA-22 family class D beta-lactamase OXA-899 NA NA
salm_GCA_001652385.2 NA CP075141.1 1115810 1119433 - iroC salmochelin/enterobactin export ABC transporter IroC plus VIRULENCE VIRULENCE NA NA BLASTX 1208 1219 98.85 80.00 1210 AUH19662.1 salmochelin/enterobactin export ABC transporter IroC NA NA
salm_GCA_001652385.2 NA CP075141.1 1119517 1120629 - iroB salmochelin biosynthesis C-glycosyltransferase IroB plus VIRULENCE VIRULENCE NA NA BLASTX 371 371 100.00 86.52 371 EOW04219.1 salmochelin biosynthesis C-glycosyltransferase IroB NA NA
salm_GCA_001652385.2 NA CP075141.1 1304000 1306189 + sinH intimin-like inverse autotransporter SinH plus VIRULENCE VIRULENCE NA NA EXACTX 730 730 100.00 100.00 730 AAL21411.1 intimin-like inverse autotransporter SinH NA NA
salm_GCA_001652385.2 NA CP075141.1 2919329 2919859 + sodC1 superoxide dismutase [Cu-Zn] SodC1 plus VIRULENCE VIRULENCE NA NA EXACTX 177 177 100.00 100.00 177 AAL19978.1 superoxide dismutase [Cu-Zn] SodC1 NA NA
salm_GCA_001652385.2 NA CP075141.1 3605936 3606397 - golS Au(I) sensor transcriptional regulator GolS plus STRESS METAL GOLD GOLD EXACTX 154 154 100.00 100.00 154 AAL19308.1 Au(I) sensor transcriptional regulator GolS NA NA
salm_GCA_001652385.2 NA CP075141.1 3606412 3607743 - golT gold/copper-translocating P-type ATPase GolT plus STRESS METAL COPPER/GOLD COPPER/GOLD PARTIALX 444 762 58.27 99.32 444 AAL19307.1 gold/copper-translocating P-type ATPase GolT NA NA
salm_GCA_001652385.2 NA CP075141.1 3608963 3610186 + mdsA multidrug efflux RND transporter periplasmic adaptor subunit MdsA plus AMR AMR EFFLUX EFFLUX BLASTX 408 408 100.00 99.75 408 AAL19306.1 multidrug efflux RND transporter periplasmic adaptor subunit MdsA NA NA
salm_GCA_001652385.2 NA CP075141.1 3610186 3613350 + mdsB multidrug efflux RND transporter permease subunit MdsB plus AMR AMR EFFLUX EFFLUX BLASTX 1055 1055 100.00 99.53 1055 AAL19305.1 multidrug efflux RND transporter permease subunit MdsB NA NA
salm_GCA_013344545.1 NA AP020332.1 295345 295773 - silE silver-binding protein SilE plus STRESS METAL SILVER SILVER BLASTX 143 143 100.00 98.60 143 AAD11743.1 silver-binding protein SilE NA NA
salm_GCA_013344545.1 NA AP020332.1 296027 297499 - silS copper/silver sensor histidine kinase SilS plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 491 491 100.00 98.98 491 SPD96882.1 copper/silver sensor histidine kinase SilS NA NA
salm_GCA_013344545.1 NA AP020332.1 297495 298172 - silR copper/silver response regulator transcription factor SilR plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 226 226 100.00 97.79 226 SPD96883.1 copper/silver response regulator transcription factor SilR NA NA
salm_GCA_013344545.1 NA AP020332.1 298362 299744 + silC Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 461 461 100.00 97.18 461 SPD96884.1 Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC NA NA
salm_GCA_013344545.1 NA AP020332.1 299775 300125 + silF Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 117 117 100.00 97.44 117 KGL71342.1 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF NA NA
salm_GCA_013344545.1 NA AP020332.1 300242 301531 + silB Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 430 430 100.00 96.28 430 AAD11748.1 Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB NA NA
salm_GCA_013344545.1 NA AP020332.1 301545 304688 + silA Cu(+)/Ag(+) efflux RND transporter permease subunit SilA plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 1048 1048 100.00 96.85 1048 AAD11749.1 Cu(+)/Ag(+) efflux RND transporter permease subunit SilA NA NA
salm_GCA_013344545.1 NA AP020332.1 305316 307790 + silP Ag(+)-translocating P-type ATPase SilP plus STRESS METAL SILVER SILVER BLASTX 825 824 100.00 94.07 826 AAD11750.1 Ag(+)-translocating P-type ATPase SilP NA NA
salm_GCA_013344545.1 NA AP020332.1 309760 311574 + pcoA multicopper oxidase PcoA plus STRESS METAL COPPER COPPER EXACTX 605 605 100.00 100.00 605 CAA58525.1 multicopper oxidase PcoA NA NA
salm_GCA_013344545.1 NA AP020332.1 311583 312470 + pcoB copper-binding protein PcoB plus STRESS METAL COPPER COPPER EXACTX 296 296 100.00 100.00 296 CAA58526.1 copper-binding protein PcoB NA NA
salm_GCA_013344545.1 NA AP020332.1 312513 312890 + pcoC copper resistance system metallochaperone PcoC plus STRESS METAL COPPER COPPER EXACTX 126 126 100.00 100.00 126 CAA58527.1 copper resistance system metallochaperone PcoC NA NA
salm_GCA_013344545.1 NA AP020332.1 312898 313824 + pcoD copper resistance inner membrane protein PcoD plus STRESS METAL COPPER COPPER EXACTX 309 309 100.00 100.00 309 CAA58528.1 copper resistance inner membrane protein PcoD NA NA
salm_GCA_013344545.1 NA AP020332.1 313882 314559 + pcoR copper response regulator transcription factor PcoR plus STRESS METAL COPPER COPPER EXACTX 226 226 100.00 100.00 226 CAA58529.1 copper response regulator transcription factor PcoR NA NA
salm_GCA_013344545.1 NA AP020332.1 314559 315956 + pcoS copper resistance membrane spanning protein PcoS plus STRESS METAL COPPER COPPER BLASTX 466 466 100.00 99.57 466 CAA58530.1 copper resistance membrane spanning protein PcoS NA NA
salm_GCA_013344545.1 NA AP020332.1 316177 316608 + pcoE copper resistance system metallochaperone PcoE plus STRESS METAL COPPER COPPER BLASTX 144 144 100.00 92.36 144 CAA58532.1 copper resistance system metallochaperone PcoE NA NA
salm_GCA_013344545.1 NA AP020332.1 1157007 1160633 - iroC salmochelin/enterobactin export ABC transporter IroC plus VIRULENCE VIRULENCE NA NA BLASTX 1209 1219 98.85 80.02 1211 AUH19662.1 salmochelin/enterobactin export ABC transporter IroC NA NA
salm_GCA_013344545.1 NA AP020332.1 1160717 1161829 - iroB salmochelin biosynthesis C-glycosyltransferase IroB plus VIRULENCE VIRULENCE NA NA BLASTX 371 371 100.00 85.44 371 EOW04219.1 salmochelin biosynthesis C-glycosyltransferase IroB NA NA
salm_GCA_013344545.1 NA AP020332.1 1353477 1355666 + sinH intimin-like inverse autotransporter SinH plus VIRULENCE VIRULENCE NA NA BLASTX 730 730 100.00 99.18 730 AAL21411.1 intimin-like inverse autotransporter SinH NA NA
salm_GCA_013344545.1 NA AP020332.1 3539383 3539844 - golS Au(I) sensor transcriptional regulator GolS plus STRESS METAL GOLD GOLD EXACTX 154 154 100.00 100.00 154 AAL19308.1 Au(I) sensor transcriptional regulator GolS NA NA
salm_GCA_013344545.1 NA AP020332.1 3539859 3542144 - golT gold/copper-translocating P-type ATPase GolT plus STRESS METAL COPPER/GOLD COPPER/GOLD BLASTX 762 762 100.00 99.74 762 AAL19307.1 gold/copper-translocating P-type ATPase GolT NA NA
salm_GCA_013344545.1 NA AP020332.1 3542421 3543644 + mdsA multidrug efflux RND transporter periplasmic adaptor subunit MdsA plus AMR AMR EFFLUX EFFLUX BLASTX 408 408 100.00 98.77 408 AAL19306.1 multidrug efflux RND transporter periplasmic adaptor subunit MdsA NA NA
salm_GCA_013344545.1 NA AP020332.1 3543644 3546808 + mdsB multidrug efflux RND transporter permease subunit MdsB plus AMR AMR EFFLUX EFFLUX BLASTX 1055 1055 100.00 99.72 1055 AAL19305.1 multidrug efflux RND transporter permease subunit MdsB NA NA
salm_GCA_013344545.1 NA AP020333.1 88789 89442 - qnrS1 quinolone resistance pentapeptide repeat protein QnrS1 core AMR AMR QUINOLONE QUINOLONE ALLELEX 218 218 100.00 100.00 218 WP_001516695.1 quinolone resistance pentapeptide repeat protein QnrS1 NA NA
salm_GCA_013344545.1 NA AP020333.1 95224 96096 + blaCTX-M-14 extended-spectrum class A beta-lactamase CTX-M-14 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_001617865.1 extended-spectrum class A beta-lactamase CTX-M-14 NA NA
salm_GCA_013344545.1 NA AP020333.1 104101 104958 - aac(3)-IId aminoglycoside N-acetyltransferase AAC(3)-IId core AMR AMR AMINOGLYCOSIDE GENTAMICIN EXACTX 286 286 100.00 100.00 286 WP_000557454.1 aminoglycoside N-acetyltransferase AAC(3)-IId NA NA
salm_GCA_013344545.1 NA AP020333.1 113163 114374 + floR chloramphenicol/florfenicol efflux MFS transporter FloR core AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL BLASTX 404 404 100.00 99.50 404 WP_000214123.1 chloramphenicol/florfenicol efflux MFS transporter FloR NA NA
salm_GCA_013344545.1 NA AP020333.1 116883 117695 - sul2 sulfonamide-resistant dihydropteroate synthase Sul2 core AMR AMR SULFONAMIDE SULFONAMIDE EXACTX 271 271 100.00 100.00 271 WP_001043260.1 sulfonamide-resistant dihydropteroate synthase Sul2 NA NA
salm_GCA_013344545.1 NA AP020333.1 122979 124175 + tet(A) tetracycline efflux MFS transporter Tet(A) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 399 399 100.00 99.75 399 WP_000804064.1 tetracycline efflux MFS transporter Tet(A) NA NA
salm_GCA_013344545.1 NA AP020333.1 133294 135210 - tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 639 639 100.00 98.12 639 WP_063856397.1 tetracycline resistance ribosomal protection protein Tet(M) NA NA
salm_GCA_013344545.1 NA AP020333.1 149591 150019 - silE silver-binding protein SilE plus STRESS METAL SILVER SILVER EXACTX 143 143 100.00 100.00 143 AAD11743.1 silver-binding protein SilE NA NA
salm_GCA_013344545.1 NA AP020333.1 150273 151745 - silS copper/silver sensor histidine kinase SilS plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 491 491 100.00 98.57 491 SPD96882.1 copper/silver sensor histidine kinase SilS NA NA
salm_GCA_013344545.1 NA AP020333.1 151904 152416 - silR copper/silver response regulator transcription factor SilR plus STRESS METAL COPPER/SILVER COPPER/SILVER PARTIALX 171 226 75.66 97.66 171 SPD96883.1 copper/silver response regulator transcription factor SilR NA NA
salm_GCA_013344545.1 NA AP020333.1 152606 153988 + silC Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 461 461 100.00 97.18 461 SPD96884.1 Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC NA NA
salm_GCA_013344545.1 NA AP020333.1 154019 154369 + silF Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 117 117 100.00 97.44 117 KGL71342.1 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF NA NA
salm_GCA_013344545.1 NA AP020333.1 154486 155775 + silB Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 430 430 100.00 96.28 430 AAD11748.1 Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB NA NA
salm_GCA_013344545.1 NA AP020333.1 156938 158929 + silA Cu(+)/Ag(+) efflux RND transporter permease subunit SilA plus STRESS METAL COPPER/SILVER COPPER/SILVER PARTIALX 664 1048 63.36 97.14 664 AAD11749.1 Cu(+)/Ag(+) efflux RND transporter permease subunit SilA NA NA
salm_GCA_013344545.1 NA AP020333.1 159649 162030 + silP Ag(+)-translocating P-type ATPase SilP plus STRESS METAL SILVER SILVER BLASTX 794 824 96.12 95.09 794 AAD11750.1 Ag(+)-translocating P-type ATPase SilP NA NA
salm_GCA_013344545.1 NA AP020333.1 164000 165814 + pcoA multicopper oxidase PcoA plus STRESS METAL COPPER COPPER EXACTX 605 605 100.00 100.00 605 CAA58525.1 multicopper oxidase PcoA NA NA
salm_GCA_013344545.1 NA AP020333.1 165823 166710 + pcoB copper-binding protein PcoB plus STRESS METAL COPPER COPPER EXACTX 296 296 100.00 100.00 296 CAA58526.1 copper-binding protein PcoB NA NA
salm_GCA_013344545.1 NA AP020333.1 166753 167130 + pcoC copper resistance system metallochaperone PcoC plus STRESS METAL COPPER COPPER EXACTX 126 126 100.00 100.00 126 CAA58527.1 copper resistance system metallochaperone PcoC NA NA
salm_GCA_013344545.1 NA AP020333.1 167214 167912 + pcoS copper resistance membrane spanning protein PcoS plus STRESS METAL COPPER COPPER INTERNAL_STOP 233 466 50.00 97.42 233 CAA58530.1 copper resistance membrane spanning protein PcoS NA NA
salm_GCA_013344545.1 NA AP020333.1 168133 168564 + pcoE copper resistance system metallochaperone PcoE plus STRESS METAL COPPER COPPER BLASTX 144 144 100.00 92.36 144 CAA58532.1 copper resistance system metallochaperone PcoE NA NA
salm_GCA_019710395.3 NA CP081189.2 1154979 1158602 - iroC salmochelin/enterobactin export ABC transporter IroC plus VIRULENCE VIRULENCE NA NA BLASTX 1208 1219 98.85 80.00 1210 AUH19662.1 salmochelin/enterobactin export ABC transporter IroC NA NA
salm_GCA_019710395.3 NA CP081189.2 1158686 1159798 - iroB salmochelin biosynthesis C-glycosyltransferase IroB plus VIRULENCE VIRULENCE NA NA BLASTX 371 371 100.00 86.52 371 EOW04219.1 salmochelin biosynthesis C-glycosyltransferase IroB NA NA
salm_GCA_019710395.3 NA CP081189.2 1171100 1172302 + tet(B) tetracycline efflux MFS transporter Tet(B) core AMR AMR TETRACYCLINE TETRACYCLINE EXACTX 401 401 100.00 100.00 401 WP_001089068.1 tetracycline efflux MFS transporter Tet(B) NA NA
salm_GCA_019710395.3 NA CP081189.2 1173592 1174023 - merR mercury resistance transcriptional regulator MerR plus STRESS METAL MERCURY MERCURY BLASTX 144 144 100.00 93.75 144 CAA77320.1 mercury resistance transcriptional regulator MerR NA NA
salm_GCA_019710395.3 NA CP081189.2 1174095 1174442 + merT mercuric transport protein MerT plus STRESS METAL MERCURY MERCURY EXACTX 116 116 100.00 100.00 116 AAB59075.1 mercuric transport protein MerT NA NA
salm_GCA_019710395.3 NA CP081189.2 1174459 1174731 + merP mercury resistance system periplasmic binding protein MerP plus STRESS METAL MERCURY MERCURY BLASTX 91 91 100.00 90.11 91 AAC38219.1 mercury resistance system periplasmic binding protein MerP NA NA
salm_GCA_019710395.3 NA CP081189.2 1174770 1175189 + merC organomercurial transporter MerC plus STRESS METAL MERCURY ORGANOMERCURY EXACTX 140 140 100.00 100.00 140 AAC33908.1 organomercurial transporter MerC NA NA
salm_GCA_019710395.3 NA CP081189.2 1397068 1399257 + sinH intimin-like inverse autotransporter SinH plus VIRULENCE VIRULENCE NA NA EXACTX 730 730 100.00 100.00 730 AAL21411.1 intimin-like inverse autotransporter SinH NA NA
salm_GCA_019710395.3 NA CP081189.2 1976188 1977060 + blaCTX-M-55 extended-spectrum class A beta-lactamase CTX-M-55 core AMR AMR BETA-LACTAM CEPHALOSPORIN ALLELEX 291 291 100.00 100.00 291 WP_015387340.1 extended-spectrum class A beta-lactamase CTX-M-55 NA NA
salm_GCA_019710395.3 NA CP081189.2 1981704 1982357 + qnrS1 quinolone resistance pentapeptide repeat protein QnrS1 core AMR AMR QUINOLONE QUINOLONE ALLELEX 218 218 100.00 100.00 218 WP_001516695.1 quinolone resistance pentapeptide repeat protein QnrS1 NA NA
salm_GCA_019710395.3 NA CP081189.2 2901089 2901619 + sodC1 superoxide dismutase [Cu-Zn] SodC1 plus VIRULENCE VIRULENCE NA NA EXACTX 177 177 100.00 100.00 177 AAL19978.1 superoxide dismutase [Cu-Zn] SodC1 NA NA
salm_GCA_019710395.3 NA CP081189.2 3580993 3581454 - golS Au(I) sensor transcriptional regulator GolS plus STRESS METAL GOLD GOLD EXACTX 154 154 100.00 100.00 154 AAL19308.1 Au(I) sensor transcriptional regulator GolS NA NA
salm_GCA_019710395.3 NA CP081189.2 3581469 3583754 - golT gold/copper-translocating P-type ATPase GolT plus STRESS METAL COPPER/GOLD COPPER/GOLD EXACTX 762 762 100.00 100.00 762 AAL19307.1 gold/copper-translocating P-type ATPase GolT NA NA
salm_GCA_019710395.3 NA CP081189.2 3584031 3585254 + mdsA multidrug efflux RND transporter periplasmic adaptor subunit MdsA plus AMR AMR EFFLUX EFFLUX EXACTX 408 408 100.00 100.00 408 AAL19306.1 multidrug efflux RND transporter periplasmic adaptor subunit MdsA NA NA
salm_GCA_019710395.3 NA CP081189.2 3585254 3588418 + mdsB multidrug efflux RND transporter permease subunit MdsB plus AMR AMR EFFLUX EFFLUX EXACTX 1055 1055 100.00 100.00 1055 AAL19305.1 multidrug efflux RND transporter permease subunit MdsB NA NA
salm_GCA_019710395.3 NA CP081189.2 4297284 4298675 - pcoS copper resistance membrane spanning protein PcoS plus STRESS METAL COPPER COPPER BLASTX 464 466 99.57 96.55 464 CAA58530.1 copper resistance membrane spanning protein PcoS NA NA
salm_GCA_019710395.3 NA CP081189.2 4298675 4299352 - pcoR copper response regulator transcription factor PcoR plus STRESS METAL COPPER COPPER BLASTX 226 226 100.00 99.56 226 CAA58529.1 copper response regulator transcription factor PcoR NA NA
salm_GCA_019710395.3 NA CP081189.2 4299410 4300336 - pcoD copper resistance inner membrane protein PcoD plus STRESS METAL COPPER COPPER BLASTX 309 309 100.00 98.71 309 CAA58528.1 copper resistance inner membrane protein PcoD NA NA
salm_GCA_019710395.3 NA CP081189.2 4300344 4300721 - pcoC copper resistance system metallochaperone PcoC plus STRESS METAL COPPER COPPER BLASTX 126 126 100.00 99.21 126 CAA58527.1 copper resistance system metallochaperone PcoC NA NA
salm_GCA_019710395.3 NA CP081189.2 4301660 4303474 - pcoA multicopper oxidase PcoA plus STRESS METAL COPPER COPPER BLASTX 605 605 100.00 99.01 605 CAA58525.1 multicopper oxidase PcoA NA NA
salm_GCA_019710395.3 NA CP081189.2 4305450 4307915 - silP Ag(+)-translocating P-type ATPase SilP plus STRESS METAL SILVER SILVER BLASTX 822 824 99.64 95.14 823 AAD11750.1 Ag(+)-translocating P-type ATPase SilP NA NA
salm_GCA_019710395.3 NA CP081189.2 4308551 4311694 - silA Cu(+)/Ag(+) efflux RND transporter permease subunit SilA plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 1048 1048 100.00 97.14 1048 AAD11749.1 Cu(+)/Ag(+) efflux RND transporter permease subunit SilA NA NA
salm_GCA_019710395.3 NA CP081189.2 4311708 4312997 - silB Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 430 430 100.00 96.74 430 AAD11748.1 Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB NA NA
salm_GCA_019710395.3 NA CP081189.2 4313113 4313463 - silF Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 117 117 100.00 97.44 117 KGL71342.1 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF NA NA
salm_GCA_019710395.3 NA CP081189.2 4313494 4314876 - silC Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 461 461 100.00 98.05 461 SPD96884.1 Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC NA NA
salm_GCA_019710395.3 NA CP081189.2 4315066 4315743 + silR copper/silver response regulator transcription factor SilR plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 226 226 100.00 97.35 226 SPD96883.1 copper/silver response regulator transcription factor SilR NA NA
salm_GCA_019710395.3 NA CP081189.2 4315739 4317208 + silS copper/silver sensor histidine kinase SilS plus STRESS METAL COPPER/SILVER COPPER/SILVER BLASTX 490 491 99.80 97.55 490 SPD96882.1 copper/silver sensor histidine kinase SilS NA NA
salm_GCA_019710395.3 NA CP081189.2 4317465 4317893 + silE silver-binding protein SilE plus STRESS METAL SILVER SILVER BLASTX 143 143 100.00 90.91 143 AAD11743.1 silver-binding protein SilE NA NA
salm_GCA_019710395.3 NA CP081189.2 4347271 4347693 - arsC glutaredoxin-dependent arsenate reductase plus STRESS METAL ARSENIC ARSENATE BLASTX 141 141 100.00 97.87 141 BAA24824.1 glutaredoxin-dependent arsenate reductase NA NA
salm_GCA_019710395.3 NA CP081189.2 4347709 4348995 - arsB arsenite efflux transporter membrane subunit ArsB plus STRESS METAL ARSENIC ARSENITE BLASTX 429 429 100.00 98.37 429 BAA24823.1 arsenite efflux transporter membrane subunit ArsB NA NA
salm_GCA_019710395.3 NA CP081189.2 4349046 4350794 - arsA arsenite efflux transporter ATPase subunit ArsA plus STRESS METAL ARSENIC ARSENITE BLASTX 583 583 100.00 95.88 583 BAA24822.1 arsenite efflux transporter ATPase subunit ArsA NA NA
salm_GCA_019710395.3 NA CP081189.2 4350815 4351174 - arsD arsenite efflux transporter metallochaperone ArsD plus STRESS METAL ARSENIC ARSENITE BLASTX 120 120 100.00 92.50 120 AAB09625.1 arsenite efflux transporter metallochaperone ArsD NA NA
salm_GCA_019710395.3 NA CP081189.2 4351225 4351575 - arsR As(III)-sensing metalloregulatory transcriptional repressor ArsR plus STRESS METAL ARSENIC ARSENIC BLASTX 117 117 100.00 94.87 117 AAB09624.1 As(III)-sensing metalloregulatory transcriptional repressor ArsR NA NA
salm_GCA_019710395.3 NA CP081190.2 7135 7497 - ble bleomycin binding protein Ble-MBL core AMR AMR BLEOMYCIN BLEOMYCIN EXACTX 121 121 100.00 100.00 121 WP_004201167.1 bleomycin binding protein Ble-MBL NA NA
salm_GCA_019710395.3 NA CP081190.2 7504 8313 - blaNDM-1 subclass B1 metallo-beta-lactamase NDM-1 core AMR AMR BETA-LACTAM CARBAPENEM ALLELEX 270 270 100.00 100.00 270 WP_004201164.1 subclass B1 metallo-beta-lactamase NDM-1 NA NA
salm_GCA_019710395.3 NA CP081190.2 14198 14851 - qnrS1 quinolone resistance pentapeptide repeat protein QnrS1 core AMR AMR QUINOLONE QUINOLONE ALLELEX 218 218 100.00 100.00 218 WP_001516695.1 quinolone resistance pentapeptide repeat protein QnrS1 NA NA
strep1_GCA_001412635.1 NA CP012805.1 244071 245987 - tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE EXACTX 639 639 100.00 100.00 639 WP_000691736.1 tetracycline resistance ribosomal protection protein Tet(M) NA NA
streppneumo_GCA_000221985.1 NA CP002925.1 236509 238425 + tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE EXACTX 639 639 100.00 100.00 639 WP_000691743.1 tetracycline resistance ribosomal protection protein Tet(M) NA NA
streppneumo_GCA_000221985.1 NA CP002925.1 239535 240269 + erm(B) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) core AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN CLINDAMYCIN/ERYTHROMYCIN/STREPTOGRAMIN B BLASTX 245 245 100.00 99.59 245 WP_001038795.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) NA NA
streppneumo_GCA_000221985.1 NA CP002925.1 266620 268080 - msr(D) ABC-F type ribosomal protection protein Msr(D) core AMR AMR MACROLIDE/STREPTOGRAMIN AZITHROMYCIN/ERYTHROMYCIN/STREPTOGRAMIN B BLASTX 487 487 100.00 99.79 487 WP_000420313.1 ABC-F type ribosomal protection protein Msr(D) NA NA
streppneumo_GCA_000221985.1 NA CP002925.1 268104 269318 - mef(A) macrolide efflux MFS transporter Mef(A) core AMR AMR MACROLIDE AZITHROMYCIN/ERYTHROMYCIN EXACTX 405 405 100.00 100.00 405 WP_000417519.1 macrolide efflux MFS transporter Mef(A) NA NA
streppneumo_GCA_000221985.1 NA CP002925.1 1367939 1369120 - pmrA multidrug efflux MFS transporter PmrA plus AMR AMR QUINOLONE QUINOLONE BLASTX 394 399 98.75 99.75 394 AAK99679.1 multidrug efflux MFS transporter PmrA NA NA
streppneumo_GCA_002076835.1 NA CP020549.1 351728 353977 + pbp2x Streptococcus pneumoniae beta-lactam resistant PBP2X core AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 750 750 100.00 93.73 750 WP_000872267.1 penicillin-binding protein PBP2X2 NA NA
streppneumo_GCA_002076835.1 NA CP020549.1 388330 390486 - pbp1a Streptococcus pneumoniae beta-lactam resistant PBP1A core AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 719 719 100.00 92.91 719 WP_001040013.1 penicillin-binding protein PBP1A0 NA NA
streppneumo_GCA_002076835.1 NA CP020549.1 936190 937386 + pmrA multidrug efflux MFS transporter PmrA plus AMR AMR QUINOLONE QUINOLONE BLASTX 399 399 100.00 99.75 399 AAK99679.1 multidrug efflux MFS transporter PmrA NA NA
streppneumo_GCA_002076835.1 NA CP020549.1 1115113 1115760 + catA type A-9 chloramphenicol O-acetyltransferase core AMR AMR PHENICOL CHLORAMPHENICOL EXACTX 216 216 100.00 100.00 216 WP_001010387.1 type A-9 chloramphenicol O-acetyltransferase NA NA
streppneumo_GCA_002076835.1 NA CP020549.1 1244689 1245678 - tet(M) tetracycline resistance ribosomal protection protein Tet(M) core AMR AMR TETRACYCLINE TETRACYCLINE PARTIALX 330 639 51.64 100.00 330 WP_002414694.1 tetracycline resistance ribosomal protection protein Tet(M) NA NA
streppneumo_GCA_002076835.1 NA CP020549.1 1256846 1257580 - erm(B) 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) core AMR AMR LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN CLINDAMYCIN/ERYTHROMYCIN/STREPTOGRAMIN B EXACTX 245 245 100.00 100.00 245 WP_001038795.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) NA NA
streppneumo_GCA_002076835.1 NA CP020549.1 1577616 1579655 - pbp2b Streptococcus pneumoniae beta-lactam resistant PBP2B core AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 680 680 100.00 97.65 680 WP_001224884.1 penicillin-binding protein PBP2B2 NA NA
vibrio_GCA_004355205.1 NA CP037931.1 631147 631608 + tet(34) oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 154 154 100.00 90.91 154 WP_005592781.1 oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) NA NA
vibrio_GCA_009665315.1 NA CP035692.1 1614751 1615599 + blaVHH VHH family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 283 283 100.00 91.87 283 WP_063865164.1 carbenicillin-hydrolyzing class A beta-lactamase VHH-1 NA NA
vibrio_GCA_009665315.1 NA CP035693.1 545920 546381 - tet(34) oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 154 154 100.00 92.21 154 WP_005592781.1 oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) NA NA
vibrio_GCA_009665315.1 NA CP035693.1 3458369 3459967 - tet(35) tetracycline efflux Na+/H+ antiporter family transporter Tet(35) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 533 533 100.00 96.06 533 WP_005480402.1 tetracycline efflux Na+/H+ antiporter family transporter Tet(35) NA NA
vibrio_GCA_009665515.2 NA CP038178.2 83235 85916 - gyrA_S83I Vibrio cholerae quinolone resistant GyrA core AMR POINT QUINOLONE QUINOLONE POINTX 894 894 100.00 99.55 894 WP_001281183.1 DNA gyrase subunit A GyrA NA NA
vibrio_GCA_009665515.2 NA CP038178.2 724118 724588 + dfrA1 trimethoprim-resistant dihydrofolate reductase DfrA1 core AMR AMR TRIMETHOPRIM TRIMETHOPRIM EXACTX 157 157 100.00 100.00 157 WP_000777554.1 trimethoprim-resistant dihydrofolate reductase DfrA1 NA NA
vibrio_GCA_009665515.2 NA CP038178.2 791912 792562 + sul2 sulfonamide-resistant dihydropteroate synthase Sul2 core AMR AMR SULFONAMIDE SULFONAMIDE PARTIALX 217 271 80.07 98.62 217 WP_001043260.1 sulfonamide-resistant dihydropteroate synthase Sul2 NA NA
vibrio_GCA_009665515.2 NA CP038178.2 792667 793431 + aph(3'')-Ib aminoglycoside O-phosphotransferase APH(3'')-Ib core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN BLASTX 255 267 95.51 98.04 255 WP_001082319.1 aminoglycoside O-phosphotransferase APH(3'')-Ib NA NA
vibrio_GCA_009665515.2 NA CP038178.2 793469 794302 + aph(6)-Id aminoglycoside O-phosphotransferase APH(6)-Id core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN EXACTX 278 278 100.00 100.00 278 WP_000480968.1 aminoglycoside O-phosphotransferase APH(6)-Id NA NA
vibrio_GCA_009665515.2 NA CP038178.2 795766 796473 - floR chloramphenicol/florfenicol efflux MFS transporter FloR core AMR AMR PHENICOL CHLORAMPHENICOL/FLORFENICOL PARTIALX 236 404 58.42 100.00 236 WP_000214119.1 chloramphenicol/florfenicol efflux MFS transporter FloR NA NA
vibrio_GCA_009665515.2 NA CP038178.2 1861177 1863441 + parC_S85L Vibrio cholerae quinolone resistant ParC core AMR POINT QUINOLONE QUINOLONE POINTX 755 761 99.21 99.47 755 WP_001960919.1 DNA topoisomerase IV subunit A ParC NA NA
vibrio_GCA_009665515.2 NA CP038178.2 2779481 2781148 + almE lipid A modification system glycine--protein ligase AlmE core AMR AMR COLISTIN COLISTIN BLASTX 556 556 100.00 98.38 556 WP_252944138.1 lipid A modification system glycine--protein ligase AlmE NA NA
vibrio_GCA_009665515.2 NA CP038178.2 2781135 2781368 + almF lipid A modification system glycine carrier protein AlmF core AMR AMR COLISTIN COLISTIN EXACTX 78 78 100.00 100.00 78 WP_000806242.1 lipid A modification system glycine carrier protein AlmF NA NA
vibrio_GCA_009665515.2 NA CP038178.2 2781373 2782191 + almG glycine--lipid A transferase AlmG core AMR AMR COLISTIN COLISTIN EXACTX 273 273 100.00 100.00 273 WP_001881365.1 glycine--lipid A transferase AlmG NA NA
vibrio_GCA_009665515.2 NA CP038178.2 2794186 2795307 - varG VarG family subclass B1-like metallo-beta-lactamase core AMR AMR BETA-LACTAM CARBAPENEM EXACTX 374 374 100.00 100.00 374 WP_000778180.1 VarG family subclass B1-like metallo-beta-lactamase NA NA
vibrio_GCA_009665515.2 NA CP038178.2 2905857 2906270 + ctxA cholera enterotoxin catalytic subunit CtxA plus VIRULENCE VIRULENCE NA NA PARTIALX 138 258 53.49 100.00 138 AAF94614.1 cholera enterotoxin catalytic subunit CtxA NA NA
vibrio_GCA_009665515.2 NA CP038178.2 2906270 2906641 + ctxB cholera enterotoxin binding subunit CtxB plus VIRULENCE VIRULENCE NA NA BLASTX 124 124 100.00 97.58 124 AAF94613.1 cholera enterotoxin binding subunit CtxB NA NA
vibrio_GCA_009665515.2 NA CP038179.2 171862 172488 + catB9 type B-5 chloramphenicol O-acetyltransferase CatB9 core AMR AMR PHENICOL CHLORAMPHENICOL EXACTX 209 209 100.00 100.00 209 WP_001009012.1 type B-5 chloramphenicol O-acetyltransferase CatB9 NA NA
vibrio_GCA_009763645.1 NA CP046808.1 280499 282097 - tet(35) tetracycline efflux Na+/H+ antiporter family transporter Tet(35) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 533 533 100.00 99.81 533 WP_005480402.1 tetracycline efflux Na+/H+ antiporter family transporter Tet(35) NA NA
vibrio_GCA_009763645.1 NA CP046808.1 743352 743813 - tet(34) oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) core AMR AMR TETRACYCLINE TETRACYCLINE BLASTX 154 154 100.00 92.21 154 WP_005592781.1 oxytetracycline resistance phosphoribosyltransferase domain-containing protein Tet(34) NA NA
vibrio_GCA_009763645.1 NA CP046809.1 159146 159802 - catC type C chloramphenicol O-acetyltransferase plus AMR AMR PHENICOL CHLORAMPHENICOL BLASTX 219 219 100.00 99.54 219 KGT34314.1 type C chloramphenicol O-acetyltransferase NA NA
vibrio_GCA_009763645.1 NA CP046809.1 1537223 1538071 + blaCARB-30 carbenicillin-hydrolyzing class A beta-lactamase CARB-30 core AMR AMR BETA-LACTAM BETA-LACTAM ALLELEX 283 283 100.00 100.00 283 WP_005498292.1 carbenicillin-hydrolyzing class A beta-lactamase CARB-30 NA NA
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