mash results

mash

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Fast genome and metagenome distance estimation using MinHash

Documentation : https://mash.readthedocs.io/en/latest/

Citation : https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0997-x

Directory tree:

mash
├── mash_summary.csv
├── sample.fasta.msh
├── sample.mashdist.txt
└── sample.summary.mash.csv

Example file for an individual sample (sample.mashdist.txt)

NZ_CP043953.1_Acinetobacter_baumannii_strain_K09-14_chromosome_complete_genome	Acinetobacter_GCF_008632635.1.fasta	7.15897e-05	0	997/1000
NZ_CP040105.1_Acinetobacter_nosocomialis_M2_chromosome_complete_genome	Acinetobacter_GCF_008632635.1.fasta	0.0782587	0	107/1000
NZ_CP065820.1_Acinetobacter_seifertii_strain_S21_chromosome_complete_genome	Acinetobacter_GCF_008632635.1.fasta	0.0843302	0	93/1000

Example file for a run (mash_summary.csv)

sample,reference,query,mash-distance,P-value,matching-hashes,organism
Acinetobacter_GCF_008632635.1,NZ_CP043953.1_Acinetobacter_baumannii_strain_K09-14_chromosome_complete_genome,Acinetobacter_GCF_008632635.1.fasta,7.15897e-05,0,997/1000,Acinetobacter_baumannii
Acinetobacter_GCF_008632635.1,NZ_CP040105.1_Acinetobacter_nosocomialis_M2_chromosome_complete_genome,Acinetobacter_GCF_008632635.1.fasta,0.0782587,0,107/1000,Acinetobacter_nosocomialis
Acinetobacter_GCF_008632635.1,NZ_CP065820.1_Acinetobacter_seifertii_strain_S21_chromosome_complete_genome,Acinetobacter_GCF_008632635.1.fasta,0.0843302,0,93/1000,Acinetobacter_seifertii
burkholderia_GCF_009586235.1,NZ_CP045235.1_Burkholderia_cepacia_strain_BC16_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0239063,0,434/1000,Burkholderia_cepacia
burkholderia_GCF_009586235.1,NZ_CP045236.1_Burkholderia_cepacia_strain_BC16_chromosome_2_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0269907,0,396/1000,Burkholderia_cepacia
burkholderia_GCF_009586235.1,NZ_CP045237.1_Burkholderia_cepacia_strain_BC16_chromosome_3_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0567566,0,179/1000,Burkholderia_cepacia
burkholderia_GCF_009586235.1,NC_007510.1_Burkholderia_lata_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0716227,0,125/1000,Burkholderia_lata
burkholderia_GCF_009586235.1,NZ_AP018358.1_Burkholderia_contaminans_strain_CH-1,burkholderia_GCF_009586235.1.fasta,0.0744324,0,117/1000,Burkholderia_contaminans
burkholderia_GCF_009586235.1,NZ_CP013401.1_Burkholderia_metallica_strain_FL-6-5-30-S1-D7_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0770708,0,110/1000,Burkholderia_metallica
burkholderia_GCF_009586235.1,NZ_CP011503.1_Burkholderia_pyrrocinia_strain_DSM_10685_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0799006,0,103/1000,Burkholderia_pyrrocinia
burkholderia_GCF_009586235.1,NZ_CP013450.1_Burkholderia_cenocepacia_strain_MSMB384WGS_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0862491,0,89/1000,Burkholderia_cenocepacia
burkholderia_GCF_009586235.1,NZ_LR025742.1_Burkholderia_stabilis_isolate_E_chromosome_I,burkholderia_GCF_009586235.1.fasta,0.0862491,0,89/1000,Burkholderia_stabilis
burkholderia_GCF_009586235.1,NC_010508.1_Burkholderia_orbicola_MC0-3_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0867434,0,88/1000,Burkholderia_orbicola
burkholderia_GCF_009586235.1,NZ_CP013398.1_Burkholderia_seminalis_strain_FL-5-4-10-S1-D7_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0887833,0,84/1000,Burkholderia_seminalis
burkholderia_GCF_009586235.1,NZ_CP066037.1_Burkholderia_ambifaria_strain_FDAARGOS_1027_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0914855,0,79/1000,Burkholderia_ambifaria
burkholderia_GCF_009586235.1,NZ_AP018357.1_Burkholderia_contaminans_strain_CH-1,burkholderia_GCF_009586235.1.fasta,0.0937829,0,75/1000,Burkholderia_contaminans
burkholderia_GCF_009586235.1,NZ_CP013366.1_Burkholderia_territorii_strain_RF8-non-BP5_chromosome_1_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0937829,0,75/1000,Burkholderia_territorii
burkholderia_GCF_009586235.1,NC_007511.1_Burkholderia_lata_chromosome_2_complete_sequence,burkholderia_GCF_009586235.1.fasta,0.0949813,0,73/1000,Burkholderia_lata
cronobacter_GCF_001277215.2,NZ_CP013940.1_Cronobacter_malonaticus_LMG_23826_chromosome_complete_genome,cronobacter_GCF_001277215.2.fasta,0.000981871,0,960/1000,Cronobacter_malonaticus
cronobacter_GCF_001277215.2,NZ_CP027107.1_Cronobacter_sakazakii_strain_CS-931_chromosome_complete_genome,cronobacter_GCF_001277215.2.fasta,0.0466675,0,231/1000,Cronobacter_sakazakii
cronobacter_GCF_001277215.2,NZ_CP012257.1_Cronobacter_universalis_NCTC_9529_chromosome_complete_genome,cronobacter_GCF_001277215.2.fasta,0.0535266,0,194/1000,Cronobacter_universalis
cronobacter_GCF_001277215.2,NZ_CP012268.1_Cronobacter_muytjensii_ATCC_51329_chromosome_complete_genome,cronobacter_GCF_001277215.2.fasta,0.0898429,0,82/1000,Cronobacter_muytjensii
cronobacter_GCF_001277215.2,NZ_CP012266.1_Cronobacter_dublinensis_subsp._dublinensis_LMG_23823_chromosome_complete_genome,cronobacter_GCF_001277215.2.fasta,0.0949813,0,73/1000,Cronobacter_dublinensis
ecoli_GCA_003019175.1,NZ_CP055292.1_Shigella_sonnei_strain_SE6-1_chromosome_complete_genome,ecoli_GCA_003019175.1.fasta,0.0110007,0,658/1000,Shigella_sonnei
ecoli_GCA_003019175.1,NZ_CP055055.1_Shigella_dysenteriae_strain_SWHEFF_49_chromosome_complete_genome,ecoli_GCA_003019175.1.fasta,0.0221335,0,458/1000,Shigella_dysenteriae
ecoli_GCA_003019175.1,NZ_JAVIWS010000001.1_Escherichia_ruysiae_strain_AB136_ctg.000000F_whole_genome_shotgun_sequence,ecoli_GCA_003019175.1.fasta,0.0671564,0,139/1000,Escherichia_ruysiae
ecoli_GCA_003019175.1,NZ_CP083638.1_Escherichia_fergusonii_strain_FDAARGOS_1499_chromosome_complete_genome,ecoli_GCA_003019175.1.fasta,0.0755413,0,114/1000,Escherichia_fergusonii
ecoli_GCA_003019175.1,NZ_CP070290.1_Escherichia_albertii_strain_Sample_167_chromosome_complete_genome,ecoli_GCA_003019175.1.fasta,0.0848014,0,92/1000,Escherichia_albertii
ecoli_GCA_003019175.1,NZ_CP072689.1_Escherichia_marmotae_strain_YF8_chromosome_complete_genome,ecoli_GCA_003019175.1.fasta,0.0857608,0,90/1000,Escherichia_marmotae
ecoli_GCA_009738455.1,NZ_CP055055.1_Shigella_dysenteriae_strain_SWHEFF_49_chromosome_complete_genome,ecoli_GCA_009738455.1.fasta,0.016782,0,542/1000,Shigella_dysenteriae
ecoli_GCA_009738455.1,NZ_CP055292.1_Shigella_sonnei_strain_SE6-1_chromosome_complete_genome,ecoli_GCA_009738455.1.fasta,0.0217795,0,463/1000,Shigella_sonnei
ecoli_GCA_009738455.1,NZ_JAVIWS010000001.1_Escherichia_ruysiae_strain_AB136_ctg.000000F_whole_genome_shotgun_sequence,ecoli_GCA_009738455.1.fasta,0.0637124,0,151/1000,Escherichia_ruysiae
ecoli_GCA_009738455.1,NZ_CP083638.1_Escherichia_fergusonii_strain_FDAARGOS_1499_chromosome_complete_genome,ecoli_GCA_009738455.1.fasta,0.0744324,0,117/1000,Escherichia_fergusonii
ecoli_GCA_009738455.1,NZ_CP072689.1_Escherichia_marmotae_strain_YF8_chromosome_complete_genome,ecoli_GCA_009738455.1.fasta,0.0834041,0,95/1000,Escherichia_marmotae
ecoli_GCA_009738455.1,NZ_CP070290.1_Escherichia_albertii_strain_Sample_167_chromosome_complete_genome,ecoli_GCA_009738455.1.fasta,0.0848014,0,92/1000,Escherichia_albertii
ecoli_GCA_023823105.1,NZ_CP055055.1_Shigella_dysenteriae_strain_SWHEFF_49_chromosome_complete_genome,ecoli_GCA_023823105.1.fasta,0.0259767,0,408/1000,Shigella_dysenteriae
ecoli_GCA_023823105.1,NZ_CP055292.1_Shigella_sonnei_strain_SE6-1_chromosome_complete_genome,ecoli_GCA_023823105.1.fasta,0.026143,0,406/1000,Shigella_sonnei
ecoli_GCA_023823105.1,NZ_JAVIWS010000001.1_Escherichia_ruysiae_strain_AB136_ctg.000000F_whole_genome_shotgun_sequence,ecoli_GCA_023823105.1.fasta,0.064825,0,147/1000,Escherichia_ruysiae
ecoli_GCA_023823105.1,NZ_CP083638.1_Escherichia_fergusonii_strain_FDAARGOS_1499_chromosome_complete_genome,ecoli_GCA_023823105.1.fasta,0.0706202,0,128/1000,Escherichia_fergusonii
ecoli_GCA_023823105.1,NZ_CP070290.1_Escherichia_albertii_strain_Sample_167_chromosome_complete_genome,ecoli_GCA_023823105.1.fasta,0.0824989,0,97/1000,Escherichia_albertii
ecoli_GCA_023823105.1,NZ_CP072689.1_Escherichia_marmotae_strain_YF8_chromosome_complete_genome,ecoli_GCA_023823105.1.fasta,0.0862491,0,89/1000,Escherichia_marmotae
kleb_GCF_000240185.1,NZ_CP084874.1_Klebsiella_africana_strain_200023_chromosome_complete_genome,kleb_GCF_000240185.1.fasta,0.047688,0,225/1000,Klebsiella_africana
kleb_GCF_000240185.1,NZ_CP045783.1_Klebsiella_variicola_strain_LEMB11_chromosome_complete_genome,kleb_GCF_000240185.1.fasta,0.0517248,0,203/1000,Klebsiella_variicola
kleb_GCF_000240185.1,NZ_CP084768.1_Klebsiella_quasivariicola_strain_08A119_chromosome_complete_genome,kleb_GCF_000240185.1.fasta,0.0545702,0,189/1000,Klebsiella_quasivariicola
kleb_GCF_000240185.1,NZ_CP065838.1_Klebsiella_quasipneumoniae_strain_KqPF26_chromosome_complete_genome,kleb_GCF_000240185.1.fasta,0.0583726,0,172/1000,Klebsiella_quasipneumoniae
kleb_GCF_003812925.1,NZ_CP033844.1_Klebsiella_oxytoca_strain_FDAARGOS_500_chromosome_complete_genome,kleb_GCF_003812925.1.fasta,4.76906e-05,0,998/1000,Klebsiella_oxytoca
kleb_GCF_003812925.1,NZ_AP022547.1_Klebsiella_michiganensis_strain_THO-011_chromosome_complete_genome,kleb_GCF_003812925.1.fasta,0.0628995,0,154/1000,Klebsiella_michiganensis
kleb_GCF_003812925.1,NZ_LR607336.1_Klebsiella_grimontii_strain_4928STDY7071328_chromosome_1,kleb_GCF_003812925.1.fasta,0.0699663,0,130/1000,Klebsiella_grimontii
kleb_GCF_003812925.1,NZ_CP073236.1_Klebsiella_pasteurii_strain_Sb-24_chromosome_complete_genome,kleb_GCF_003812925.1.fasta,0.0706202,0,128/1000,Klebsiella_pasteurii
kleb_GCF_015139575.1,NZ_AP022547.1_Klebsiella_michiganensis_strain_THO-011_chromosome_complete_genome,kleb_GCF_015139575.1.fasta,0.000361208,0,985/1000,Klebsiella_michiganensis
kleb_GCF_015139575.1,NZ_CP073236.1_Klebsiella_pasteurii_strain_Sb-24_chromosome_complete_genome,kleb_GCF_015139575.1.fasta,0.0517248,0,203/1000,Klebsiella_pasteurii
kleb_GCF_015139575.1,NZ_LR607336.1_Klebsiella_grimontii_strain_4928STDY7071328_chromosome_1,kleb_GCF_015139575.1.fasta,0.0556462,0,184/1000,Klebsiella_grimontii
kleb_GCF_015139575.1,NZ_CP033844.1_Klebsiella_oxytoca_strain_FDAARGOS_500_chromosome_complete_genome,kleb_GCF_015139575.1.fasta,0.0637124,0,151/1000,Klebsiella_oxytoca
legionella_GCA_001753085.1,NZ_CP015941.1_Legionella_pneumophila_strain_C9_S_chromosome_complete_genome,legionella_GCA_001753085.1.fasta,0.000705841,0,971/1000,Legionella_pneumophila
myco_GCF_000195955.2,NC_015848.1_Mycobacterium_canettii_CIPT_140010059_complete_sequence,myco_GCF_000195955.2.fasta,0.00564181,0,799/1000,Mycobacterium_canettii
ralstonia_GCF_021173085.1,NZ_CP076413.1_Ralstonia_wenshanensis_strain_56D2_chromosome_complete_genome,ralstonia_GCF_021173085.1.fasta,0.0119383,0,637/1000,Ralstonia_wenshanensis
ralstonia_GCF_021173085.1,NZ_CP076412.1_Ralstonia_wenshanensis_strain_56D2_chromosome_p56D2_complete_sequence,ralstonia_GCF_021173085.1.fasta,0.0298031,0,365/1000,Ralstonia_wenshanensis
salm_GCA_001652385.2,NC_021870.1_Salmonella_bongori_N268-08_complete_sequence,salm_GCA_001652385.2.fasta,0.0898429,0,82/1000,Salmonella_bongori
salm_GCA_013344545.1,NC_021870.1_Salmonella_bongori_N268-08_complete_sequence,salm_GCA_013344545.1.fasta,0.0920479,0,78/1000,Salmonella_bongori
salm_GCA_019710395.3,NC_021870.1_Salmonella_bongori_N268-08_complete_sequence,salm_GCA_019710395.3.fasta,0.0920479,0,78/1000,Salmonella_bongori
shinella_GCF_020883495.1,NZ_CP086610.1_Shinella_zoogloeoides_strain_ATCC_19623_chromosome_complete_genome,shinella_GCF_020883495.1.fasta,0.00451781,0,834/1000,Shinella_zoogloeoides
shinella_GCF_020883495.1,NZ_CP086611.1_Shinella_zoogloeoides_strain_ATCC_19623_plasmid_unnamed1_complete_sequence,shinella_GCF_020883495.1.fasta,0.0882637,0,85/1000,Shinella_zoogloeoides
strep1_GCA_001412635.1,NZ_CP012805.1_Streptococcus_anginosus_strain_J4211_chromosome_complete_genome,strep1_GCA_001412635.1.fasta,0,0,1000/1000,Streptococcus_anginosus
strep1_GCA_001412635.1,NZ_CP034543.1_Streptococcus_periodonticum_strain_KCOM_2412_chromosome_complete_genome,strep1_GCA_001412635.1.fasta,0.0295179,0,368/1000,Streptococcus_periodonticum
strep1_GCA_001412635.1,NZ_UHFC01000002.1_Streptococcus_constellatus_strain_NCTC11325_whole_genome_shotgun_sequence,strep1_GCA_001412635.1.fasta,0.0759181,0,113/1000,Streptococcus_constellatus
strep1_GCA_001412635.1,NZ_JAFINR010000001.1_Streptococcus_vaginalis_strain_P1L01_NODE_1_length_446779_cov_847.37_whole_genome_shotgun_sequence,strep1_GCA_001412635.1.fasta,0.0867434,0,88/1000,Streptococcus_vaginalis
strep1_GCA_001412635.1,NZ_LS483436.1_Streptococcus_intermedius_strain_NCTC11324_chromosome_1_complete_sequence,strep1_GCA_001412635.1.fasta,0.0974869,0,69/1000,Streptococcus_intermedius
strep1_GCA_001412635.1,NZ_JACOOM010000021.1_Streptococcus_hominis_strain_NSJ-17_E-D3-64_ctg002_whole_genome_shotgun_sequence,strep1_GCA_001412635.1.fasta,0.100152,0,65/1000,Streptococcus_hominis
strep1_GCA_016724885.1,NZ_CP066069.1_Streptococcus_dysgalactiae_strain_FDAARGOS_1017_chromosome_complete_genome,strep1_GCA_016724885.1.fasta,0.0375603,0,294/1000,Streptococcus_dysgalactiae
strep1_GCA_900475035.1,NZ_LS483338.1_Streptococcus_pyogenes_strain_NCTC12064_chromosome_1_complete_sequence,strep1_GCA_900475035.1.fasta,0,0,1000/1000,Streptococcus_pyogenes
strep1_GCA_900475035.1,NZ_CP066069.1_Streptococcus_dysgalactiae_strain_FDAARGOS_1017_chromosome_complete_genome,strep1_GCA_900475035.1.fasta,0.0807479,0,101/1000,Streptococcus_dysgalactiae
streppneumo_GCA_000221985.1,NC_015875.1_Streptococcus_pseudopneumoniae_IS7493_complete_sequence,streppneumo_GCA_000221985.1.fasta,7.15897e-05,0,997/1000,Streptococcus_pseudopneumoniae
streppneumo_GCA_000221985.1,NZ_CP020549.1_Streptococcus_pneumoniae_strain_Hu17_chromosome,streppneumo_GCA_000221985.1.fasta,0.0501998,0,211/1000,Streptococcus_pneumoniae
streppneumo_GCA_000221985.1,NZ_AP024523.1_Streptococcus_toyakuensis_strain_TP1632_chromosome_complete_genome,streppneumo_GCA_000221985.1.fasta,0.0615839,0,159/1000,Streptococcus_toyakuensis
streppneumo_GCA_000221985.1,NZ_CAOKTW010000002.1_Streptococcus_bouchesdurhonensis_strain_Marseille-Q6994_contig00002_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0626325,0,155/1000,Streptococcus_bouchesdurhonensis
streppneumo_GCA_000221985.1,NZ_CP032621.1_Streptococcus_gwangjuense_strain_KCOM_1679_(=ChDC_B345)_chromosome_complete_genome,streppneumo_GCA_000221985.1.fasta,0.0723061,0,123/1000,Streptococcus_gwangjuense
streppneumo_GCA_000221985.1,NZ_JYGP01000002.1_Streptococcus_mitis_strain_OT25_TZ90_contig000002_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0755413,0,114/1000,Streptococcus_mitis
streppneumo_GCA_000221985.1,NZ_CAHJXN010000002.1_Streptococcus_thalassemiae_strain_Marseille-Q2617_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0898429,0,82/1000,Streptococcus_thalassemiae
streppneumo_GCA_000221985.1,NZ_CAHJXN010000003.1_Streptococcus_thalassemiae_strain_Marseille-Q2617_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0943778,0,74/1000,Streptococcus_thalassemiae
streppneumo_GCA_000221985.1,NZ_VFJA01000001.1_Streptococcus_symci_strain_C17_Scaffold1_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0943778,0,74/1000,Streptococcus_symci
streppneumo_GCA_000221985.1,NZ_CAOKTW010000008.1_Streptococcus_bouchesdurhonensis_strain_Marseille-Q6994_contig00008_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0949813,0,73/1000,Streptococcus_bouchesdurhonensis
streppneumo_GCA_000221985.1,NZ_RBCK01000001.1_Streptococcus_chosunense_strain_ChDC_B353_KCOM1699_1_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0962153,0,71/1000,Streptococcus_chosunense
streppneumo_GCA_000221985.1,NZ_CAOKTW010000004.1_Streptococcus_bouchesdurhonensis_strain_Marseille-Q6994_contig00004_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0994698,0,66/1000,Streptococcus_bouchesdurhonensis
streppneumo_GCA_000221985.1,NZ_JAHXBZ010000001.1_Streptococcus_humanilactis_strain_IMAU99125_IMAU99125_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.0994698,0,66/1000,Streptococcus_humanilactis
streppneumo_GCA_000221985.1,NZ_CAOKTW010000007.1_Streptococcus_bouchesdurhonensis_strain_Marseille-Q6994_contig00007_whole_genome_shotgun_sequence,streppneumo_GCA_000221985.1.fasta,0.100152,0,65/1000,Streptococcus_bouchesdurhonensis
streppneumo_GCA_002076835.1,NZ_CP020549.1_Streptococcus_pneumoniae_strain_Hu17_chromosome,streppneumo_GCA_002076835.1.fasta,7.15897e-05,0,997/1000,Streptococcus_pneumoniae
streppneumo_GCA_002076835.1,NC_015875.1_Streptococcus_pseudopneumoniae_IS7493_complete_sequence,streppneumo_GCA_002076835.1.fasta,0.0503867,0,210/1000,Streptococcus_pseudopneumoniae
streppneumo_GCA_002076835.1,NZ_AP024523.1_Streptococcus_toyakuensis_strain_TP1632_chromosome_complete_genome,streppneumo_GCA_002076835.1.fasta,0.0668569,0,140/1000,Streptococcus_toyakuensis
streppneumo_GCA_002076835.1,NZ_JYGP01000002.1_Streptococcus_mitis_strain_OT25_TZ90_contig000002_whole_genome_shotgun_sequence,streppneumo_GCA_002076835.1.fasta,0.0733545,0,120/1000,Streptococcus_mitis
streppneumo_GCA_002076835.1,NZ_CP032621.1_Streptococcus_gwangjuense_strain_KCOM_1679_(=ChDC_B345)_chromosome_complete_genome,streppneumo_GCA_002076835.1.fasta,0.0762985,0,112/1000,Streptococcus_gwangjuense
streppneumo_GCA_002076835.1,NZ_JAHXBZ010000001.1_Streptococcus_humanilactis_strain_IMAU99125_IMAU99125_whole_genome_shotgun_sequence,streppneumo_GCA_002076835.1.fasta,0.0955937,0,72/1000,Streptococcus_humanilactis
streppneumo_GCA_002076835.1,NZ_RBCK01000001.1_Streptococcus_chosunense_strain_ChDC_B353_KCOM1699_1_whole_genome_shotgun_sequence,streppneumo_GCA_002076835.1.fasta,0.0955937,0,72/1000,Streptococcus_chosunense
streppneumo_GCA_002076835.1,NZ_VFJA01000001.1_Streptococcus_symci_strain_C17_Scaffold1_whole_genome_shotgun_sequence,streppneumo_GCA_002076835.1.fasta,0.0955937,0,72/1000,Streptococcus_symci
streppneumo_GCA_002076835.1,NZ_CAHJXN010000002.1_Streptococcus_thalassemiae_strain_Marseille-Q2617_whole_genome_shotgun_sequence,streppneumo_GCA_002076835.1.fasta,0.0987984,0,67/1000,Streptococcus_thalassemiae
vibrio_GCA_002953375.1,NZ_CP014035.2_Vibrio_fluvialis_strain_ATCC_33809_chromosome_2_complete_sequence,vibrio_GCA_002953375.1.fasta,0.0342477,0,322/1000,Vibrio_fluvialis
vibrio_GCA_002953375.1,NZ_CP014034.2_Vibrio_fluvialis_strain_ATCC_33809_chromosome_1_complete_sequence,vibrio_GCA_002953375.1.fasta,0.0651085,0,146/1000,Vibrio_fluvialis
vibrio_GCA_004355205.1,NZ_CP016322.1_Vibrio_vulnificus_strain_FORC_037_chromosome_II_complete_sequence,vibrio_GCA_004355205.1.fasta,0.0437856,0,249/1000,Vibrio_vulnificus
vibrio_GCA_004355205.1,NZ_CP016321.1_Vibrio_vulnificus_strain_FORC_037_chromosome_I_complete_sequence,vibrio_GCA_004355205.1.fasta,0.0487413,0,219/1000,Vibrio_vulnificus
vibrio_GCA_004355205.1,NZ_JAKGCY010000001.1_Vibrio_floridensis_strain_IRLE0018_contig1_whole_genome_shotgun_sequence,vibrio_GCA_004355205.1.fasta,0.0974869,0,69/1000,Vibrio_floridensis
vibrio_GCA_009665315.1,NZ_CP125875.1_Vibrio_harveyi_strain_SB1_chromosome_I_complete_sequence,vibrio_GCA_009665315.1.fasta,0.0250805,0,419/1000,Vibrio_harveyi
vibrio_GCA_009665315.1,NZ_CP125876.1_Vibrio_harveyi_strain_SB1_chromosome_II_complete_sequence,vibrio_GCA_009665315.1.fasta,0.0439391,0,248/1000,Vibrio_harveyi
vibrio_GCA_009665315.1,NZ_CP019959.1_Vibrio_owensii_strain_XSBZ03_chromosome_1_complete_sequence,vibrio_GCA_009665315.1.fasta,0.0820539,0,98/1000,Vibrio_owensii
vibrio_GCA_009665315.1,NZ_CP026321.1_Vibrio_campbellii_strain_BoB-53_chromosome_1_complete_sequence,vibrio_GCA_009665315.1.fasta,0.0882637,0,85/1000,Vibrio_campbellii
vibrio_GCA_009665315.1,NZ_CP018312.1_Vibrio_rotiferianus_strain_B64D1_chromosome_2_complete_sequence,vibrio_GCA_009665315.1.fasta,0.0926182,0,77/1000,Vibrio_rotiferianus
vibrio_GCA_009665515.2,NZ_CP043554.1_Vibrio_cholerae_strain_RFB16_chromosome_1_complete_sequence,vibrio_GCA_009665515.2.fasta,0.0224927,0,453/1000,Vibrio_cholerae
vibrio_GCA_009665515.2,NZ_CP043556.1_Vibrio_cholerae_strain_RFB16_chromosome_2_complete_sequence,vibrio_GCA_009665515.2.fasta,0.0639874,0,150/1000,Vibrio_cholerae
vibrio_GCA_009665515.2,NZ_QKKR01000007.1_Vibrio_paracholerae_strain_2016V-1111_2016V-1111_contig_0601_adapter_split_whole_genome_shotgun_sequence,vibrio_GCA_009665515.2.fasta,0.0926182,0,77/1000,Vibrio_paracholerae
vibrio_GCA_009665515.2,NZ_ADAF01000001.1_Vibrio_mimicus_MB451_strain_MB-451_Contig43_whole_genome_shotgun_sequence,vibrio_GCA_009665515.2.fasta,0.0949813,0,73/1000,Vibrio_mimicus
vibrio_GCA_009763645.1,NC_004603.1_Vibrio_parahaemolyticus_RIMD_2210633_chromosome_1_complete_sequence,vibrio_GCA_009763645.1.fasta,0.0236777,0,437/1000,Vibrio_parahaemolyticus
vibrio_GCA_009763645.1,NC_004605.1_Vibrio_parahaemolyticus_RIMD_2210633_chromosome_2_complete_sequence,vibrio_GCA_009763645.1.fasta,0.0489202,0,218/1000,Vibrio_parahaemolyticus