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vfbext-base.obo
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format-version: 1.2
data-version: vfbext/releases/2025-01-10/vfbext-base.owl
date: 10:01:2025 10:50
idspace: dc http://purl.org/dc/elements/1.1/
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl#
idspace: terms http://purl.org/dc/terms/
remark: VFB extension ontology
ontology: vfbext/vfbext-base
property_value: dc:description "An ontology of miscellaneous terms for data annotation in VFB." xsd:string
property_value: dc:title "VFB Extension Ontology" xsd:string
property_value: dc:type IAO:8000001
property_value: owl:versionInfo "2025-01-10" xsd:string
property_value: terms:license "https://creativecommons.org/licenses/by/4.0/</terms:license>" xsd:string
[Term]
id: VFB:10000005
name: cell cluster
is_a: BFO:0000004
[Term]
id: VFBext:0000004
name: expression pattern fragment
comment: A multicellular structure that is part of an expression pattern.
is_a: FBbt:00100313
intersection_of: FBbt:00100313
intersection_of: BFO:0000050 CARO:0030002
relationship: BFO:0000050 CARO:0030002
created_by: dos
creation_date: 2018-03-04T10:55:59Z
[Term]
id: VFBext:0000006
name: multi channel image
is_a: http://xmlns.com/foaf/0.1/image
[Term]
id: VFBext:0000007
name: template image
comment: A single channel image that is used as a template for image registration.
is_a: VFBext:0000014 ! channel
created_by: dos
creation_date: 2018-05-15T15:53:38Z
[Term]
id: VFBext:0000010
name: intersectional expression pattern
is_a: FBbt:10000000
created_by: dos
creation_date: 2018-09-26T07:54:17Z
[Term]
id: VFBext:0000014
name: channel
is_a: http://xmlns.com/foaf/0.1/image
[Typedef]
id: VFBext:0000001
name: has_channel
[Typedef]
id: VFBext:0000002
name: has_background_channel
is_a: VFBext:0000001 ! has_channel
[Typedef]
id: VFBext:0000003
name: has_signal_channel
is_a: VFBext:0000001 ! has_channel
[Typedef]
id: VFBext:0000008
name: has hemidriver
def: "A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression. For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain. In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements." [PMID:17088209]
domain: VFBext:0000010 ! intersectional expression pattern
created_by: dos
creation_date: 2018-09-26T07:48:55Z
[Typedef]
id: VFBext:0000009
name: has driver
def: "A relation that applies between a synthetic expression pattern and a transgene that drives it. For example, the GAL4 UAS system uses the yeast transcription factor GAL4 transgenes with specific expression patterns are used to drive expression of transgenes under the control of UAS promoter elements." [PMID:8223268, Wikipedia:GAL4/UAS_system]
domain: CARO:0030002
is_a: RO:0002292
created_by: dos
creation_date: 2018-09-26T07:49:10Z