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vfbext-base.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/vfbext/vfbext-base.owl#"
xml:base="http://purl.obolibrary.org/obo/vfbext/vfbext-base.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:vfb="http://purl.obolibrary.org/obo/fbbt/vfb/"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:vfb2="http://purl.obolibrary.org/obo/fbbt/vfb#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vfbext/vfbext-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vfbext/releases/2025-01-10/vfbext-base.owl"/>
<dc:description>An ontology of miscellaneous terms for data annotation in VFB.</dc:description>
<dc:title>VFB Extension Ontology</dc:title>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:license>https://creativecommons.org/licenses/by/4.0/</terms:license></terms:license>
<oboInOwl:date>10:01:2025 10:50</oboInOwl:date>
<rdfs:comment>VFB extension ontology</rdfs:comment>
<owl:versionInfo>2025-01-10</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000005 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000005">
<rdfs:label>source_data_link</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<!-- http://purl.org/dc/elements/1.1/type -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/type"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>
<!-- http://www.geneontology.org/formats/oboInOwl#date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#date"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<!-- http://purl.obolibrary.org/obo/RO_0002292 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002292"/>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000001 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000001">
<rdfs:label>has_channel</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000002 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000002">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000001"/>
<rdfs:label>has_background_channel</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000003 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000003">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000001"/>
<rdfs:label>has_signal_channel</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000010"/>
<obo:IAO_0000115>A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression. For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain. In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements.</obo:IAO_0000115>
<oboInOwl:created_by>dos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-09-26T07:48:55Z</oboInOwl:creation_date>
<rdfs:label xml:lang="en">has hemidriver</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000008"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression. For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain. In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements.</owl:annotatedTarget>
<oboInOwl:hasDbXref>PMID:17088209</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000009 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000009">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002292"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/CARO_0030002"/>
<obo:IAO_0000115>A relation that applies between a synthetic expression pattern and a transgene that drives it. For example, the GAL4 UAS system uses the yeast transcription factor GAL4 transgenes with specific expression patterns are used to drive expression of transgenes under the control of UAS promoter elements.</obo:IAO_0000115>
<oboInOwl:created_by>dos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-09-26T07:49:10Z</oboInOwl:creation_date>
<rdfs:label xml:lang="en">has driver</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000009"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A relation that applies between a synthetic expression pattern and a transgene that drives it. For example, the GAL4 UAS system uses the yeast transcription factor GAL4 transgenes with specific expression patterns are used to drive expression of transgenes under the control of UAS promoter elements.</owl:annotatedTarget>
<oboInOwl:hasDbXref>PMID:8223268</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>Wikipedia:GAL4/UAS_system</oboInOwl:hasDbXref>
</owl:Axiom>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000004"/>
<!-- http://purl.obolibrary.org/obo/CARO_0030002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/CARO_0030002"/>
<!-- http://purl.obolibrary.org/obo/FBbt_00100313 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00100313"/>
<!-- http://purl.obolibrary.org/obo/FBbt_10000000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_10000000"/>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFB_10000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFB_10000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:label>cell cluster</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000004">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/FBbt_00100313"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CARO_0030002"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FBbt_00100313"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CARO_0030002"/>
</owl:Restriction>
</rdfs:subClassOf>
<oboInOwl:created_by>dos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-03-04T10:55:59Z</oboInOwl:creation_date>
<rdfs:comment>A multicellular structure that is part of an expression pattern.</rdfs:comment>
<rdfs:label xml:lang="en">expression pattern fragment</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000006">
<rdfs:subClassOf rdf:resource="http://xmlns.com/foaf/0.1/image"/>
<rdfs:label>multi channel image</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000014"/>
<oboInOwl:created_by>dos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-05-15T15:53:38Z</oboInOwl:creation_date>
<rdfs:comment>A single channel image that is used as a template for image registration.</rdfs:comment>
<rdfs:label xml:lang="en">template image</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FBbt_10000000"/>
<oboInOwl:created_by>dos</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-09-26T07:54:17Z</oboInOwl:creation_date>
<rdfs:label xml:lang="en">intersectional expression pattern</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000014">
<rdfs:subClassOf rdf:resource="http://xmlns.com/foaf/0.1/image"/>
<rdfs:label>channel</rdfs:label>
</owl:Class>
<!-- http://xmlns.com/foaf/0.1/image -->
<owl:Class rdf:about="http://xmlns.com/foaf/0.1/image"/>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->