-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathvfbext-simple.obo
119 lines (101 loc) · 4.39 KB
/
vfbext-simple.obo
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
format-version: 1.2
data-version: vfbext/releases/2025-01-10/vfbext-simple.owl
date: 10:01:2025 10:50
subsetdef: clone ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_gocam ""
subsetdef: neuron ""
subsetdef: ns_part ""
subsetdef: synaptic_neuropil ""
subsetdef: tract ""
idspace: dc http://purl.org/dc/elements/1.1/
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl#
idspace: terms http://purl.org/dc/terms/
remark: VFB extension ontology
ontology: vfbext/vfbext-simple
property_value: dc:description "An ontology of miscellaneous terms for data annotation in VFB." xsd:string
property_value: dc:title "VFB Extension Ontology" xsd:string
property_value: owl:versionInfo "2025-01-10" xsd:string
property_value: terms:license "https://creativecommons.org/licenses/by/4.0/</terms:license>" xsd:string
[Term]
id: VFB:10000005
name: cell cluster
[Term]
id: VFBext:0000004
name: expression pattern fragment
comment: A multicellular structure that is part of an expression pattern.
created_by: dos
creation_date: 2018-03-04T10:55:59Z
[Term]
id: VFBext:0000006
name: multi channel image
[Term]
id: VFBext:0000007
name: template image
comment: A single channel image that is used as a template for image registration.
is_a: VFBext:0000014 ! channel
created_by: dos
creation_date: 2018-05-15T15:53:38Z
[Term]
id: VFBext:0000010
name: intersectional expression pattern
created_by: dos
creation_date: 2018-09-26T07:54:17Z
[Term]
id: VFBext:0000014
name: channel
[Typedef]
id: BFO:0000050
name: part of
def: "a core relation that holds between a part and its whole" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
is_transitive: true
[Typedef]
id: RO:0002292
name: expresses
def: "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process." []
[Typedef]
id: RO:0002350
name: member of
def: "is member of is a mereological relation between a item and a collection." []
is_a: BFO:0000050 ! part of
[Typedef]
id: VFBext:0000001
name: has_channel
[Typedef]
id: VFBext:0000002
name: has_background_channel
is_a: VFBext:0000001 ! has_channel
[Typedef]
id: VFBext:0000003
name: has_signal_channel
is_a: VFBext:0000001 ! has_channel
[Typedef]
id: VFBext:0000008
name: has hemidriver
def: "A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression. For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain. In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements." [PMID:17088209]
domain: VFBext:0000010 ! intersectional expression pattern
created_by: dos
creation_date: 2018-09-26T07:48:55Z
[Typedef]
id: VFBext:0000009
name: has driver
def: "A relation that applies between a synthetic expression pattern and a transgene that drives it. For example, the GAL4 UAS system uses the yeast transcription factor GAL4 transgenes with specific expression patterns are used to drive expression of transgenes under the control of UAS promoter elements." [PMID:8223268, Wikipedia:GAL4/UAS_system]
is_a: RO:0002292 ! expresses
created_by: dos
creation_date: 2018-09-26T07:49:10Z
[Typedef]
id: http://purl.obolibrary.org/obo/C888C3DB-AEFA-447F-BD4C-858DFE33DBE7
name: has_exemplar
[Typedef]
id: http://purl.obolibrary.org/obo/c099d9d6-4ef3-11e3-9da7-b1ad5291e0b0
name: exemplar_of
is_a: RO:0002350 ! member of
[Typedef]
id: http://xmlns.com/foaf/0.1/depicts
name: depicts