vfbext.obo

format-version: 1.2
date: 10:01:2025 10:49
subsetdef: clone ""
subsetdef: core ""
subsetdef: cur ""
subsetdef: EmbDevSlim ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_gocam ""
subsetdef: larval_OF ""
subsetdef: neuron ""
subsetdef: ns_part ""
subsetdef: plus ""
subsetdef: ro-eco ""
subsetdef: synaptic_neuropil ""
subsetdef: tract ""
idspace: dc http://purl.org/dc/elements/1.1/ 
idspace: foaf http://xmlns.com/foaf/0.1/ 
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# 
idspace: terms http://purl.org/dc/terms/ 
remark: VFB extension ontology
ontology: http://virtualflybrain.org/data/VFB/OWL/vfbext.owl
property_value: dc:description "An ontology of miscellaneous terms for data annotation in VFB." xsd:string
property_value: dc:title "VFB Extension Ontology" xsd:string
property_value: owl:versionInfo "2025-01-10" xsd:string
property_value: terms:license "https://creativecommons.org/licenses/by/4.0/</terms:license>" xsd:string

[Term]
id: BFO:0000001
name: entity

[Term]
id: BFO:0000002
name: continuant
is_a: BFO:0000001 ! entity
disjoint_from: BFO:0000003 ! occurrent

[Term]
id: BFO:0000003
name: occurrent
is_a: BFO:0000001 ! entity

[Term]
id: BFO:0000004
name: independent continuant
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000020 ! specifically dependent continuant
disjoint_from: BFO:0000031 ! generically dependent continuant

[Term]
id: BFO:0000015
name: process
is_a: BFO:0000003 ! occurrent

[Term]
id: BFO:0000017
name: realizable entity
is_a: BFO:0000020 ! specifically dependent continuant

[Term]
id: BFO:0000020
name: specifically dependent continuant
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000031 ! generically dependent continuant

[Term]
id: BFO:0000023
name: role
is_a: BFO:0000017 ! realizable entity

[Term]
id: BFO:0000031
name: generically dependent continuant
is_a: BFO:0000002 ! continuant

[Term]
id: BFO:0000040
name: material entity
is_a: BFO:0000004 ! independent continuant
disjoint_from: BFO:0000141 ! immaterial entity

[Term]
id: BFO:0000141
name: immaterial entity
is_a: BFO:0000004 ! independent continuant

[Term]
id: CARO:0000000
name: anatomical entity
def: "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex.  Or, a substance produced by a cellular organism with granularity above the level of a protein complex." [CAROC:Brownsville2014]
is_a: CARO:0030000 ! biological entity

[Term]
id: CARO:0000003
name: connected anatomical structure
def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." []
subset: core
is_a: CARO:0000006 ! material anatomical entity
intersection_of: CARO:0000006 ! material anatomical entity
intersection_of: RO:0000053 PATO:0002266 ! has characteristic
intersection_of: RO:0000053 PATO:0010000 ! has characteristic
disjoint_from: CARO:0000004 ! organism substance
relationship: RO:0000053 PATO:0002266 ! has characteristic
relationship: RO:0000053 PATO:0010000 ! has characteristic

[Term]
id: CARO:0000004
name: organism substance
def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body and that does not have inherent 3D shape generated by coordinated expression of the organism's own genome." []
is_a: CARO:0001008 ! gross anatomical part

[Term]
id: CARO:0000006
name: material anatomical entity
def: "An anatomical entity that has mass." []
subset: core
is_a: CARO:0000000 ! anatomical entity
intersection_of: CARO:0000000 ! anatomical entity
intersection_of: RO:0000053 PATO:0000125 ! has characteristic
disjoint_from: CARO:0000007 ! immaterial anatomical entity
relationship: RO:0000053 PATO:0000125 ! has characteristic

[Term]
id: CARO:0000007
name: immaterial anatomical entity
def: "Anatomical entity that has no mass." []
subset: core
is_a: BFO:0000141 ! immaterial entity
is_a: CARO:0000000 ! anatomical entity

[Term]
id: CARO:0000012
name: multicellular organism
def: "Anatomical structure that is an individual member of a clade and, at some point in its life-cycle, consists of more than one cell." []
is_a: CARO:0010004 ! cellular organism

[Term]
id: CARO:0000013
name: cell
def: "An anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." []
xref: CL:0000000
xref: GO:0005623
is_a: CARO:0000003 ! connected anatomical structure
is_a: CARO:0020003 ! cellular anatomical structure
disjoint_from: CARO:0000014 ! cell part
disjoint_from: CARO:0000040 ! acellular anatomical structure
disjoint_from: CARO:0000042 ! extraembryonic structure
disjoint_from: CARO:0001000 ! multi-cell-part structure
disjoint_from: CARO:0010000 ! multicellular anatomical structure

[Term]
id: CARO:0000014
name: cell part
def: "Anatomical structure that is part of a cell and that has a granularity level equal to that of a protein complex or higher." []
is_a: CARO:0000003 ! connected anatomical structure
disjoint_from: CARO:0000040 ! acellular anatomical structure
disjoint_from: CARO:0000042 ! extraembryonic structure
disjoint_from: CARO:0001000 ! multi-cell-part structure
disjoint_from: CARO:0010000 ! multicellular anatomical structure
relationship: BFO:0000050 CARO:0000013 ! part of cell

[Term]
id: CARO:0000032
name: organism subdivision
def: "Anatomical structure which is a subdivision of a whole organism, consisting of components of multiple anatomical systems, largely surrounded by a contiguous region of integument." []
subset: core
is_a: CARO:0010000 ! multicellular anatomical structure

[Term]
id: CARO:0000040
name: acellular anatomical structure
def: "An anatomical structure that has no cells or cell parts as a part." []
is_a: CARO:0000003 ! connected anatomical structure
is_a: CARO:0001008 ! gross anatomical part
intersection_of: CARO:0000003 ! connected anatomical structure
intersection_of: RO:0002180 CARO:0000013 {cardinality="0"} ! has component cell
intersection_of: RO:0002180 CARO:0000014 {cardinality="0"} ! has component cell part
disjoint_from: CARO:0000042 ! extraembryonic structure
disjoint_from: CARO:0001000 ! multi-cell-part structure
disjoint_from: CARO:0010000 ! multicellular anatomical structure

[Term]
id: CARO:0000042
name: extraembryonic structure
def: "A multicellular anatomical structure that is associated with an embryo and derived from the zygote from which it develops, but which does not contribute to the embryo proper or to structures that are part of the same organism after embryogenesis." []
subset: plus
is_a: CARO:0000003 ! connected anatomical structure
is_a: CARO:0001008 ! gross anatomical part
disjoint_from: CARO:0001000 ! multi-cell-part structure
disjoint_from: CARO:0010000 ! multicellular anatomical structure

[Term]
id: CARO:0001000
name: multi-cell-part structure
def: "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." []
subset: core
is_a: CARO:0001008 ! gross anatomical part
disjoint_from: CARO:0010000 ! multicellular anatomical structure

[Term]
id: CARO:0001008
name: gross anatomical part
def: "Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell.  Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells. " []
subset: plus
is_a: CARO:0000006 ! material anatomical entity
union_of: CARO:0000004 ! organism substance
union_of: CARO:0000032 ! organism subdivision
union_of: CARO:0000040 ! acellular anatomical structure
union_of: CARO:0000042 ! extraembryonic structure
union_of: CARO:0001000 ! multi-cell-part structure
union_of: CARO:0010000 ! multicellular anatomical structure
relationship: BFO:0000050 CARO:0000012 ! part of multicellular organism

[Term]
id: CARO:0001010
name: organism
def: "Material anatomical entity that is a member of an individual species or is a viral or viroid particle." []
is_a: BFO:0000040 ! material entity

[Term]
id: CARO:0010000
name: multicellular anatomical structure
def: "An anatomical structure that has more than one cell as a part." []
subset: core
is_a: CARO:0000003 ! connected anatomical structure
is_a: CARO:0001008 ! gross anatomical part
relationship: RO:0000053 PATO:0001993 ! has characteristic

[Term]
id: CARO:0010004
name: cellular organism
def: "An individual member of a clade of cellular organisms." []
is_a: CARO:0000003 ! connected anatomical structure
is_a: CARO:0001010 ! organism

[Term]
id: CARO:0020000
name: disconnected anatomical group
def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." []
subset: core
is_a: CARO:0000006 ! material anatomical entity
intersection_of: CARO:0000006 ! material anatomical entity
intersection_of: RO:0000053 PATO:0010001 ! has characteristic
intersection_of: RO:0002180 CARO:0000003 {minCardinality="2"} ! has component connected anatomical structure
relationship: RO:0000053 PATO:0010001 ! has characteristic
relationship: RO:0002180 CARO:0000003 ! has component connected anatomical structure

[Term]
id: CARO:0020003
name: cellular anatomical structure
def: "An anatomical structure consisting of one or more cells." []
is_a: CARO:0000006 ! material anatomical entity
created_by: https://orcid.org/0000-0002-7073-9172
creation_date: 2018-09-28T14:20:19Z

[Term]
id: CARO:0030000
name: biological entity
def: "Entity that is, is part of, or derived from an organism, virus, or viroid or a collection of them." []
is_a: BFO:0000004 ! independent continuant

[Term]
id: CARO:0030002
name: expression pattern
def: "The mereological sum of all cells in a single organism in which expression of some specified gene occurs." []
is_a: CARO:0020003 ! cellular anatomical structure
relationship: BFO:0000051 CARO:0000013 ! has part cell

[Term]
id: FBbt:00007001
name: anatomical structure
def: "Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome." [https://orcid.org/0000-0001-9114-8737, https://orcid.org/0000-0002-7073-9172]
subset: cur
subset: larval_OF
xref: CARO:0000003
xref: UBERON:0000061
is_a: FBbt:00007016 ! material anatomical entity

[Term]
id: FBbt:00007016
name: material anatomical entity
subset: cur
subset: larval_OF
xref: CARO:0000006
xref: UBERON:0000465
is_a: FBbt:10000000 ! anatomical entity

[Term]
id: FBbt:00100313
name: multicellular structure
def: "Anatomical structure that has multiple cells as parts." [https://orcid.org/0000-0002-7073-9172]
xref: UBERON:0010000
is_a: FBbt:00007001 ! anatomical structure

[Term]
id: FBbt:10000000
name: anatomical entity
def: "Anatomical entity which is part_of Drosophila melanogaster." [https://orcid.org/0000-0001-9114-8737]
subset: cur
subset: EmbDevSlim
subset: larval_OF
xref: UBERON:0001062
is_a: CARO:0000000 ! anatomical entity
intersection_of: CARO:0000000 ! anatomical entity
intersection_of: BFO:0000050 NCBITaxon:7227 ! part of
relationship: BFO:0000050 NCBITaxon:7227 ! part of

[Term]
id: NCBITaxon:10239
is_a: OBI:0100026 ! organism

[Term]
id: NCBITaxon:2
is_a: OBI:0100026 ! organism

[Term]
id: NCBITaxon:2157
is_a: OBI:0100026 ! organism

[Term]
id: NCBITaxon:2759
is_a: OBI:0100026 ! organism

[Term]
id: OBI:0000011
name: planned process
def: "A process that realizes a plan which is the concretization of a plan specification." []
is_a: BFO:0000015 ! process

[Term]
id: OBI:0000112
name: specimen role
def: "A role borne by a material entity that is obtained during a specimen collection process and that can be realized by performing measurements or observations on the specimen." []
is_a: BFO:0000023 ! role

[Term]
id: OBI:0000659
name: specimen collection process
def: "A planned process with the objective to obtain a material entity for potential use as an input upon which measurements or observations are performed." []
is_a: OBI:0000011 ! planned process
intersection_of: OBI:0000011 ! planned process
intersection_of: OBI:0000417 OBI:0000684 ! achieves_planned_objective specimen collection objective
relationship: OBI:0000293 BFO:0000040 ! has_specified_input material entity
relationship: OBI:0000299 OBI:0100051 ! has_specified_output specimen
relationship: OBI:0000417 OBI:0000684 ! achieves_planned_objective specimen collection objective

[Term]
id: OBI:0000684
name: specimen collection objective
def: "A objective specification that is fulfilled by obtaining a material entity for potential use as an input upon which measurements or observations are performed." []
is_a: IAO:0000005

[Term]
id: OBI:0001479
name: specimen from organism
def: "A specimen that derives from an anatomical part or substance arising from an organism. Examples of tissue specimen include tissue, organ, physiological system, blood, or body location (arm)." []
is_a: OBI:0100051 ! specimen

[Term]
id: OBI:0002076
name: collection of specimens
def: "A material entity that has two or more specimens as its parts." []
is_a: BFO:0000040 ! material entity
intersection_of: BFO:0000040 ! material entity
intersection_of: RO:0002351 OBI:0100051 {all_only="true"} ! has member specimen

[Term]
id: OBI:0002648
name: individual organism specimen
def: "A specimen composed of an individual organism to be studied in an investigation." []
is_a: OBI:0100051 ! specimen
intersection_of: OBI:0100051 ! specimen
intersection_of: RO:0002180 OBI:0100026 {cardinality="1"} ! has component organism
relationship: RO:0002180 OBI:0100026 ! has component organism

[Term]
id: OBI:0100026
name: organism
def: "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs." []
is_a: BFO:0000040 ! material entity
union_of: NCBITaxon:10239
union_of: NCBITaxon:2
union_of: NCBITaxon:2157
union_of: NCBITaxon:2759

[Term]
id: OBI:0100051
name: specimen
def: "A material entity that is collected for potential use as an input upon which measurements or observations are performed." []
is_a: BFO:0000040 ! material entity
intersection_of: BFO:0000040 ! material entity
intersection_of: RO:0000087 OBI:0000112 ! has role specimen role
relationship: RO:0000087 OBI:0000112 ! has role specimen role

[Term]
id: SO:0000110
is_a: BFO:0000040 ! material entity

[Term]
id: VFB:10000005
name: cell cluster
is_a: BFO:0000004 ! independent continuant

[Term]
id: VFBext:0000004
name: expression pattern fragment
comment: A multicellular structure that is part of an expression pattern.
is_a: FBbt:00100313 ! multicellular structure
intersection_of: FBbt:00100313 ! multicellular structure
intersection_of: BFO:0000050 CARO:0030002 ! part of expression pattern
relationship: BFO:0000050 CARO:0030002 ! part of expression pattern
created_by: dos
creation_date: 2018-03-04T10:55:59Z

[Term]
id: VFBext:0000006
name: multi channel image
is_a: foaf:image

[Term]
id: VFBext:0000007
name: template image
comment: A single channel image that is used as a template for image registration.
is_a: VFBext:0000014 ! channel
created_by: dos
creation_date: 2018-05-15T15:53:38Z

[Term]
id: VFBext:0000010
name: intersectional expression pattern
is_a: FBbt:10000000 ! anatomical entity
created_by: dos
creation_date: 2018-09-26T07:54:17Z

[Term]
id: VFBext:0000014
name: channel
is_a: foaf:image

[Typedef]
id: BFO:0000050
name: part of
def: "a core relation that holds between a part and its whole" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
is_transitive: true
is_a: RO:0002131 ! overlaps
inverse_of: BFO:0000051 ! has part

[Typedef]
id: BFO:0000051
name: has part
def: "a core relation that holds between a whole and its part" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
is_transitive: true
is_a: RO:0002131 ! overlaps

[Typedef]
id: BFO:0000054
name: realized in
domain: BFO:0000017 ! realizable entity
range: BFO:0000015 ! process
inverse_of: BFO:0000055 ! realizes

[Typedef]
id: BFO:0000055
name: realizes
domain: BFO:0000015 ! process
range: BFO:0000017 ! realizable entity

[Typedef]
id: OBI:0000293
name: has_specified_input
def: "The inverse property of is_specified_input_of" []
domain: OBI:0000011 ! planned process
is_a: RO:0000057 ! has participant
inverse_of: OBI:0000295 ! is_specified_input_of

[Typedef]
id: OBI:0000295
name: is_specified_input_of
def: "A relation between a planned process and a continuant participating in that process that is not created during  the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of." []
range: OBI:0000011 ! planned process
is_a: RO:0000056 ! participates in

[Typedef]
id: OBI:0000299
name: has_specified_output
def: "The inverse property of is_specified_output_of" []
domain: OBI:0000011 ! planned process
is_a: RO:0000057 ! has participant
inverse_of: OBI:0000312 ! is_specified_output_of

[Typedef]
id: OBI:0000312
name: is_specified_output_of
def: "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of." []
range: OBI:0000011 ! planned process
is_a: RO:0000056 ! participates in

[Typedef]
id: OBI:0000417
name: achieves_planned_objective
def: "This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process." []
domain: OBI:0000011 ! planned process
range: IAO:0000005
inverse_of: OBI:0000833 ! objective_achieved_by

[Typedef]
id: OBI:0000833
name: objective_achieved_by
def: "This relation obtains between an objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process." []
domain: IAO:0000005
range: OBI:0000011 ! planned process

[Typedef]
id: RO:0000052
name: characteristic of
def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." []
is_functional: true
is_a: RO:0002314 ! characteristic of part of
inverse_of: RO:0000053 ! has characteristic

[Typedef]
id: RO:0000053
name: has characteristic
def: "Inverse of characteristic_of" []
range: BFO:0000020 ! specifically dependent continuant
is_inverse_functional: true

[Typedef]
id: RO:0000056
name: participates in
def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" []
domain: BFO:0000002 ! continuant
range: BFO:0000003 ! occurrent
inverse_of: RO:0000057 ! has participant

[Typedef]
id: RO:0000057
name: has participant
def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" []
property_value: terms:source "http://www.obofoundry.org/ro/#OBO_REL:has_participant" xsd:string
domain: BFO:0000003 ! occurrent
range: BFO:0000002 ! continuant
holds_over_chain: BFO:0000051 RO:0000057

[Typedef]
id: RO:0000058
name: is concretized as
def: "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants." []
domain: BFO:0000031 ! generically dependent continuant
range: BFO:0000020 ! specifically dependent continuant
inverse_of: RO:0000059 ! concretizes

[Typedef]
id: RO:0000059
name: concretizes
def: "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant." []
domain: BFO:0000020 ! specifically dependent continuant
range: BFO:0000031 ! generically dependent continuant

[Typedef]
id: RO:0000081
name: role of
def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" []
is_a: RO:0000052 ! characteristic of
inverse_of: RO:0000087 ! has role

[Typedef]
id: RO:0000087
name: has role
def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" []
domain: BFO:0000004 ! independent continuant
range: BFO:0000023 ! role
is_a: RO:0000053 ! has characteristic

[Typedef]
id: RO:0002026
name: in register with
def: "A relationship that holds between two images, A and B, where:\nA depicts X;\nB depicts Y;\nX and Y are both of type T'\nC is a 2 layer image consiting of layers A and B;\nA and B are aligned in C according to a shared co-ordinate framework so that common features of X and Y are co-incident with each other.\nNote: A and B may be 2D or 3D.\nExamples include: the relationship between two channels collected simultaneously from a confocal microscope; the relationship between an image dpeicting X and a painted annotation layer that delineates regions of X; the relationship between the tracing of a neuron on an EM stack and the co-ordinate space of the stack; the relationship between two separately collected images that have been brought into register via some image registration software." [https://orcid.org/0000-0002-7073-9172]
domain: foaf:image
range: foaf:image
is_a: RO:0002323 ! mereotopologically related to
created_by: https://orcid.org/0000-0002-7073-9172
creation_date: 2017-12-07T12:58:06Z

[Typedef]
id: RO:0002131
name: overlaps
def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_gocam
subset: ro-eco
holds_over_chain: BFO:0000050 BFO:0000050
holds_over_chain: BFO:0000051 BFO:0000050 {RO:0002582="true"}
holds_over_chain: BFO:0000051 RO:0002131
is_symmetric: true
is_a: RO:0002323 ! mereotopologically related to
transitive_over: BFO:0000050 ! part of

[Typedef]
id: RO:0002180
name: has component
def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." []
subset: ro-eco
is_a: BFO:0000051 ! has part

[Typedef]
id: RO:0002206
name: expressed in
def: "x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process" []
domain: BFO:0000002 ! continuant
range: UBERON:0000465
is_a: RO:0002330 ! genomically related to
inverse_of: RO:0002292 ! expresses
transitive_over: BFO:0000050 ! part of

[Typedef]
id: RO:0002292
name: expresses
def: "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process." []
is_a: RO:0002330 ! genomically related to

[Typedef]
id: RO:0002314
name: characteristic of part of
def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." []
holds_over_chain: RO:0000052 BFO:0000050 {RO:0002582="true"}
is_a: RO:0002502 ! depends on
transitive_over: BFO:0000050 ! part of

[Typedef]
id: RO:0002323
name: mereotopologically related to
def: "A mereological relationship or a topological relationship" []

[Typedef]
id: RO:0002330
name: genomically related to
def: "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts." []
domain: BFO:0000002 ! continuant
range: BFO:0000002 ! continuant

[Typedef]
id: RO:0002350
name: member of
def: "is member of is a mereological relation between a item and a collection." []
is_a: BFO:0000050 ! part of
inverse_of: RO:0002351 ! has member

[Typedef]
id: RO:0002351
name: has member
def: "has member is a mereological relation between a collection and an item." []
is_a: BFO:0000051 ! has part

[Typedef]
id: RO:0002502
name: depends on

[Typedef]
id: RO:0010001
name: generically depends on
def: "A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*." []
domain: BFO:0000031 ! generically dependent continuant
range: BFO:0000004 ! independent continuant
holds_over_chain: RO:0000052 RO:0000058
inverse_of: RO:0010002 ! is carrier of

[Typedef]
id: RO:0010002
name: is carrier of
def: "*b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t*" []
domain: BFO:0000004 ! independent continuant
range: BFO:0000031 ! generically dependent continuant
holds_over_chain: RO:0000059 RO:0000053

[Typedef]
id: VFBext:0000001
name: has_channel

[Typedef]
id: VFBext:0000002
name: has_background_channel
is_a: VFBext:0000001 ! has_channel

[Typedef]
id: VFBext:0000003
name: has_signal_channel
is_a: VFBext:0000001 ! has_channel

[Typedef]
id: VFBext:0000008
name: has hemidriver
def: "A relationship between an interesctional expression pattern and one of the hemidrivers that contributes to driving its expression.  For example, the split-GAL4 system drives expression using transgenes encoding a pair of interacting proteins, one with a GAL4 DNA binding domain and one with an transcription activation domain.  In cells that co-express these two transgenes, interaction between the two proteins reconsitutes a transcription factor, driving expression from transgenes under the control o f UAS enhancer/promoter elements." [PMID:17088209]
domain: VFBext:0000010 ! intersectional expression pattern
created_by: dos
creation_date: 2018-09-26T07:48:55Z

[Typedef]
id: VFBext:0000009
name: has driver
def: "A relation that applies between a synthetic expression pattern and a transgene that drives it.  For example, the GAL4 UAS system uses the yeast transcription factor GAL4 transgenes with specific expression patterns are used to drive expression of transgenes under the control of UAS promoter elements." [PMID:8223268, Wikipedia:GAL4/UAS_system]
domain: CARO:0030002 ! expression pattern
is_a: RO:0002292 ! expresses
created_by: dos
creation_date: 2018-09-26T07:49:10Z

[Typedef]
id: foaf:depicts
name: depicts

[Typedef]
id: http://purl.obolibrary.org/obo/C888C3DB-AEFA-447F-BD4C-858DFE33DBE7
name: has_exemplar

[Typedef]
id: http://purl.obolibrary.org/obo/c099d9d6-4ef3-11e3-9da7-b1ad5291e0b0
name: exemplar_of
is_a: RO:0002350 ! member of