pyproject.toml

[build-system]
requires = ["setuptools>=58.2.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = 'dmt-learn'
dynamic = ["version"]
description = 'An Explainable Deep Network for Dimension Reduction (EVNet)'
readme = {file = "README.md", content-type = "text/markdown"}
license = {file = "LICENSE.txt"}
requires-python = ">=3.10"
authors = [
  { name="zangzelin", email="zangzelin@westlake.edu.cn" },
]
maintainers = [
  {name = "masiqi", email = "masiqi@westlake.edu.cn"}
]
classifiers=[
    "Intended Audience :: Developers",
    "Intended Audience :: Education",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Environment :: GPU :: NVIDIA CUDA",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering",
    "Operating System :: POSIX :: Linux",
]
dependencies = [
  'pynndescent',
  'scikit-learn',
  'numpy',
  'matplotlib',
  'tqdm',
  'fsspec',
  'numba',
  'scanpy',
  'torch>=2.3.1',
  'torchaudio>=2.3.1',
  'torchvision>=0.18.1',
  'lightning==2.4.0',
  'umap-learn'
]

[project.optional-dependencies]
eval = ['pandas', 'plotly']

[dynamic]
keywords = ["dimension reduction manifold deep network"]

[tool.setuptools.dynamic]
version = { attr = "dmt.__version__" }