Dockerfile.prod

FROM rocker/geospatial:4.2

# Tidyverse system requirements
RUN apt-get update -qq && apt-get -y --no-install-recommends install \
    libxml2-dev \
    libcairo2-dev \
    libgit2-dev \
    default-libmysqlclient-dev \
    libpq-dev \
    libsasl2-dev \
    libsqlite3-dev \
    libssh2-1-dev \
    unixodbc-dev && \
  rm -rf /var/lib/apt/lists/*

# Install imports
RUN install2.r --error --skipinstalled \
    config \
    dplyr \
    git2r \
    googleAuthR \
    googleCloudStorageR \
    googledrive \
    httr \
    jsonlite \
    logger \
    lubridate \
    magrittr \
    purrr \
    RCurl \
    readr \
    stringr \
    tibble \
    tidyr \
    rlang \
    googlesheets4 \
    httr2

# Install suggests
RUN install2.r --error --skipinstalled \
    covr \
    pkgdown \
    sessioninfo \
    testthat \
    roxygen2 \
    tidyselect \
    textclean \
    dataverse \
    rmarkdown \
    geosphere \
    broom \
    zoo \
    kableExtra \
    ggplot2 \
    bookdown \
    cowplot \
    broom \
    ggpubr \
    furrr \
    future \
    univOutl \
    taxize \
    tinytest \
    remotes \
    tidytext \
    zip \
    leaflet \
    htmltools \
    Amelia \
    mice \
    blastula \
    glue \
    mime \
    janitor \
    reactable \
    reactablefmtr \
    kableExtra \
    reticulate \
    apexcharter \
    ggforce \
    treemapify \
    sf

# Install specific version of rfishbase
RUN Rscript -e 'install.packages("rfishbase", repos="https://cran.rstudio.com/", dependencies = TRUE)'

# Install GitHub packages
RUN installGithub.r hrbrmstr/ggchicklet
RUN installGithub.r glmmTMB/glmmTMB/glmmTMB


# Install local package
COPY . /home
WORKDIR /home
RUN Rscript -e 'remotes::install_local(dependencies = TRUE)'

ENTRYPOINT ["Rscript"]