From 2a51595ba769991d292804f6ba139615f02f1081 Mon Sep 17 00:00:00 2001 From: xuyungang Date: Fri, 12 Jul 2019 17:40:43 -0400 Subject: [PATCH] Remove duplicated directory --- .../GLiMMPScode/Rscripts/GLiMMPS_functions.R | 327 ---- .../GLiMMPScode/Rscripts/sQTLGWAS.oneexon.R | 457 ------ .../Rscripts/sQTLregress.onechrom.parallel.R | 322 ---- .../Rscripts/sQTLregress.oneexon.R | 315 ---- .../Rscripts/sQTLregress.oneexon.parallel.R | 334 ----- .../Rscripts/summarystat_exonmin5.R | 236 --- .../GLiMMPScode/config.GLiMMPS.txt | 37 - .../pythonperlsrcs/batch_allASevents.pl | 92 -- .../pythonperlsrcs/batch_getASreads.pl | 115 -- .../pythonperlsrcs/batchtophat2uniq.pl | 25 - .../pythonperlsrcs/config.single.rMATS.txt | 86 -- .../pythonperlsrcs/processGTF.SAMs.py | 668 --------- .../rMATS.processsUnique.singlesam.py | 1082 ------------- .../pythonperlsrcs/summarizeallexoninc.pl | 157 -- .../GLiMMPScode/readme.GLiMMPS.txt | 10 - .../GLiMMPScode/runGLiMMPS.parallel.sh | 29 - GLIMMPS_pipline/LICENSE | 674 --------- GLIMMPS_pipline/README.md | 114 -- .../data_download_process/CEU.samples.txt | 92 -- .../CEU_igsr_Geuvadis.tsv.tsv | 324 ---- .../data_download_process/fastqDownloader.sh | 32 - .../igsr_Geuvadis.tsv.tsv | 1336 ----------------- .../data_download_process/mapSTAR.sh | 28 - .../data_download_process/repMerge.sh | 22 - .../data_download_process/vcf2plink.sh | 21 - .../data_download_process/vcfDownloader.sh | 14 - 26 files changed, 6949 deletions(-) delete mode 100644 GLIMMPS_pipline/GLiMMPScode/Rscripts/GLiMMPS_functions.R delete mode 100644 GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLGWAS.oneexon.R delete mode 100644 GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.onechrom.parallel.R delete mode 100644 GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.oneexon.R delete mode 100644 GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.oneexon.parallel.R delete mode 100644 GLIMMPS_pipline/GLiMMPScode/Rscripts/summarystat_exonmin5.R delete mode 100644 GLIMMPS_pipline/GLiMMPScode/config.GLiMMPS.txt delete mode 100644 GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batch_allASevents.pl delete mode 100644 GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batch_getASreads.pl delete mode 100644 GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batchtophat2uniq.pl delete mode 100644 GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/config.single.rMATS.txt delete mode 100644 GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/processGTF.SAMs.py delete mode 100644 GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/rMATS.processsUnique.singlesam.py delete mode 100644 GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/summarizeallexoninc.pl delete mode 100644 GLIMMPS_pipline/GLiMMPScode/readme.GLiMMPS.txt delete mode 100644 GLIMMPS_pipline/GLiMMPScode/runGLiMMPS.parallel.sh delete mode 100644 GLIMMPS_pipline/LICENSE delete mode 100644 GLIMMPS_pipline/README.md delete mode 100644 GLIMMPS_pipline/data_download_process/CEU.samples.txt delete mode 100644 GLIMMPS_pipline/data_download_process/CEU_igsr_Geuvadis.tsv.tsv delete mode 100644 GLIMMPS_pipline/data_download_process/fastqDownloader.sh delete mode 100644 GLIMMPS_pipline/data_download_process/igsr_Geuvadis.tsv.tsv delete mode 100644 GLIMMPS_pipline/data_download_process/mapSTAR.sh delete mode 100644 GLIMMPS_pipline/data_download_process/repMerge.sh delete mode 100644 GLIMMPS_pipline/data_download_process/vcf2plink.sh delete mode 100644 GLIMMPS_pipline/data_download_process/vcfDownloader.sh diff --git a/GLIMMPS_pipline/GLiMMPScode/Rscripts/GLiMMPS_functions.R b/GLIMMPS_pipline/GLiMMPScode/Rscripts/GLiMMPS_functions.R deleted file mode 100644 index 95818da..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/Rscripts/GLiMMPS_functions.R +++ /dev/null @@ -1,327 +0,0 @@ -######################## -# functions for GLiMMPS -# -# Last update: 06/19/2019 (by Yungang Xu, yungang.xu@hotmail.com) -# - - - - -library(lme4) - -################################################################################################################################################ -# functions for sQTL associations -######## -# -# The sQTL functions have input data as a list(y, n, SNP), and output the p-values and beta estimate for fixed effect (intercept and then the SNP effect) -################## -# generalized linear model - -glm.sQTL<- function (data) { - options(warn=2) # - - snp.pval <- 1 - betas <- c(0,0) - #psi.fitted - if ( length(unique(data$SNP[!is.na(data$y) & data$n>0 & !is.na(data$SNP)] )) >1) { - - response <- cbind(data$y, data$n-data$y) - SNP <- data$SNP - testglm = try(glm(response ~ SNP, family = binomial),FALSE) # - #summary(results) - # summary(results)$coefficients - #summary(results)$fitted.values - if (!( inherits(testglm,"try-error") || !testglm$converged)) { # only when there is no complete separation problem and it converges in logistic regression - results <- testglm - betas <- summary(results)$coefficients[,1] - snp.pval <- summary(results)$coefficients[2,4] - } - #psi.fitted <- results$fitted.value -} - options(error = NULL, warn = 0) - - return ( list(betas =betas, pval = snp.pval ) ) -} - - -################## -# generalized linear model with quasibinomial family to handle overdispersion; it's performing well. - -glmquasi.sQTL<- function (data) { - options(warn=2) # - - snp.pval <- 1 - betas <- c(0,0) - #psi.fitted - if ( length(unique(data$SNP[!is.na(data$y) & data$n>0 & !is.na(data$SNP)] )) >1) { - nomissing <- (!is.na(data$y) & data$n>0 & !is.na(data$SNP)) - response <- cbind(data$y[nomissing], data$n[nomissing]-data$y[nomissing]) - SNP <- data$SNP[nomissing] - testglm = try(glm(response ~ SNP, family = quasibinomial),FALSE) #quasibinomial(Overdispersed Binomial Regression). - #summary(results) - # summary(results)$coefficients - #summary(results)$fitted.values - if (!( inherits(testglm,"try-error") || !testglm$converged)) { # only when there is no complete separation problem and it converges in logistic regression - results <- testglm - betas <- summary(results)$coefficients[,1] - snp.pval <- summary(results)$coefficients[2,4] - } - #psi.fitted <- results$fitted.value -} - options(error = NULL, warn = 0) - - return ( list(betas =betas, pval = snp.pval ) ) -} - -################## -# generalized linear mixed model regression with Wald's test for fixed effect -glmmWald.sQTL <- function(data) { - ####### glmm with Wald's test for fixed effect - # library(lme4) - options(warn=2) # - - snp.pval <- 1 - betas <- c(0,0) - - if ( length(unique(data$SNP[!is.na(data$y) & data$n>0 & !is.na(data$SNP)] )) >1) { - nomissing <- (!is.na(data$y) & data$n>0 & !is.na(data$SNP)) - response <- cbind(data$y[nomissing], data$n[nomissing]-data$y[nomissing]) - SNP <- data$SNP[nomissing] - obs <- seq(1,length(SNP)) - - testglm = try( suppressMessages( glmer(response ~ SNP +(1|obs), family=binomial)),silent=TRUE) #invidual-level random effect for overdispersion. - - if ( !( inherits(testglm,"try-error") )) { # only when it converges - betas <-fixef(testglm) - if (!is.na(fixef(testglm)[2])) { - snp.pval <- summary(testglm)$coefficients[2,4] - } - } - #psi.fitted <- results$fitted.value -} - options(error = NULL, warn = 0) - - return ( list(betas =betas, pval = snp.pval ) ) -} - - -############### -# GLiMMPS method -################## -# generalized linear mixed model regression with LRT test for fixed effect -glmm.sQTL <- function(data) { - ####### glmm - # library(lme4) - #options(warn=2) #this turns all warnings into errors, KZ change - - snp.pval <- 1 - betas <- c(0,0) - - if ( length(unique(data$SNP[!is.na(data$y) & data$n>0 & !is.na(data$SNP)] )) >1) { - nomissing <- (!is.na(data$y) & data$n>0 & !is.na(data$SNP)) - response <- cbind(data$y[nomissing], data$n[nomissing]-data$y[nomissing]) - SNP <- data$SNP[nomissing] - obs <- seq(1,length(SNP)) - - testglm = try( suppressMessages( glmer(response ~ SNP +(1|obs), family=binomial)),silent=TRUE) #invidual-level random effect for overdispersion. - testglm0 = try(suppressMessages( glmer(response ~ 1 +(1|obs), family=binomial)),silent=TRUE) # - -# if (!( inherits(testglm,"try-error") || inherits(testglm0,"try-error") )) { # only when it converges ## KZchange - betas <- try(fixef(testglm), silent=TRUE) - if (! inherits(betas,"try-error") & !is.na(betas[2])) { - snp.pval <- anova(testglm, testglm0)$"Pr(>Chisq)"[2] - } else betas=c(0, 0) - -# } ## KZchange - #psi.fitted <- results$fitted.value -} -# options(error = NULL, warn = 0) ## KZchange - - return ( list(betas =betas, pval = snp.pval ) ) -} - - -####################################### -# linear model -### use psi =y/n and do linear regression ## -lm.sQTL<- function (data) { - options(warn=2) # - - snp.pval <- 1 - betas <- c(0,0) - #psi.fitted - if ( length(unique(data$SNP[!is.na(data$y) & data$n>0 & !is.na(data$SNP)] )) >1) { - - psi <- data$y/data$n - psi[data$n==0] <- NA - SNP <- data$SNP - testlm = try(lm(psi ~ SNP),FALSE) #quasibinomial(Overdispersed Binomial Regression). - #summary(results) - # summary(results)$coefficients - #summary(results)$fitted.values - if (!( inherits(testlm,"try-error") )) { # only when there is no complete separation problem and it converges in logistic regression - results <- testlm - betas <- summary(results)$coefficients[,1] - snp.pval <- summary(results)$coefficients[2,4] - } - #psi.fitted <- results$fitted.value -} - options(error = NULL, warn = 0) - - return ( list(betas =betas, pval = snp.pval ) ) -} - - - -################################################################################################################################################ -SNP.annotation <- function(snppos.vector, exon.start, exon.end,exon.strand) { - - SNPtype <- rep("",length(snppos.vector)) - for ( i in 1:length(snppos.vector) ){ - snppos <- snppos.vector[i] - ############### ######### - dist.3ss <- ( snppos - exon.start) - dist.5ss <- ( snppos - exon.end) - - type <- ">300bp" - if ( dist.3ss > (-300) && dist.5ss <= 300 ) { - type <- "<=300bp" - } - -# 5'SS : 9 bases long. [3 bases in exon][6 bases in intron] -# 3'SS : 23 bases long. [20 bases in the intron][3 base in the exon] - - - - if ( dist.3ss > 0 && dist.5ss <= 0 ) { - type <- "exon" - } - - if ( dist.3ss > (-20) && dist.3ss<=3 && exon.strand=="+" ) { - type <- "3SS" - if ( dist.3ss ==0 || dist.3ss== -1 ) { - type <- "3SSAG" - } - } - if ( dist.5ss <= (20) && dist.5ss >(-3) && exon.strand=="-" ) { - type <- "3SS" - if ( dist.5ss ==1 || dist.5ss== 2 ) { - type <- "3SSAG" - } - - } - - if ( dist.5ss > (-3) && dist.5ss<=6 && exon.strand=="+") { - type <- "5SS" - if ( dist.5ss ==1 || dist.5ss== 2 ) { - type <- "5SSGT" - } - } - if ( dist.3ss > (-6) && dist.3ss<=3 && exon.strand=="-") { - type <- "5SS" - if ( dist.3ss ==0 || dist.3ss== -1 ) { - type <- "5SSGT" - } - } - SNPtype[i] <- type - } ## end of each SNP - - return(SNPtype) -} - - -############################################################################################################################################### -######################## -# plot functions for GLiMMPS -# -# plot the psi ~ SNP with dot size proportional to total read counts for each individual -psi.geno.plot <- function(y,n,snpID,genesymbol, exonname,exon.coordinate,outputdir ) { - - ABs <- as.matrix(SNP.infor)[match(snpID, SNP.infor$SNP),c(5,4)] # A/a (Major/minor) - Alleles <- c(paste(ABs[1],ABs[1],sep="") ,paste(ABs[1],ABs[2],sep=""), paste(ABs[2],ABs[2],sep="")) # AA/Aa/aa - - xlabel <- snpID - title <- paste( genesymbol,"\n", exon.coordinate,sep="") #exon.chr,":",exon.start,"-",exon.end,sep="") - title2 <- paste(genesymbol,exonname,snpID,sep="_") - - gi <- seq(1,length(map[,2]))[as.character(map[,2])==snpID ] - SNP <- geno[,gi] - - psi <- y/n - psi[n==0] <- NA - N <- length(n) - - - ###################### - # use the plot function for reach exonpsi-SNP pair - ####### y, n, SNP, xlabel, title, Alleles (allele information) - cat ( paste("Generating Figure: psiplot_",title2,".pdf\n",sep="")) - pdf( paste(outputdir,"/psiplot_",title2,".pdf",sep=""),width=4,height=8) - -# par(oma=c(0,0,0,0),mar=c(2.8,4.5,2.8,0.25), cex.lab=1.5,las=1,cex.axis=1.5) #,bty="l") - par(oma=c(0.5,0.5,0.5,0),mar=c(4,4.5,4,0.5), cex.lab=1.5,las=1,cex.axis=1.5) #,bty="l") - -############## - ylim.range <- c(0,1) #range(psi,na.rm=T) - plot(jitter(SNP,factor=0.5), psi,ylab=expression(paste(psi," (RNA-Seq)")), xlab= xlabel, main=title,xlim=c(-0.25,2.75), xaxt="n",type="n" ,ylim=ylim.range) #ylim= c(0,1)) - points(jitter(SNP,factor=0.5) ,psi , pch= 19, cex= log10(n+1)/1 ,col=1) - mtext(text=Alleles, side=1, at= c(0,1,2),cex=1.5,line= 1) - # mtext(text = xlabel, side=1,at=1,cex=1.5,line=1.6) - - -## legend of dot size -points( rep(2.3,6) , seq(1,6)*0.05+0.5 , pch= 19, cex= log10( c(1,5,10,20,50,100)+1)/1 ) -text(rep(2.55,7) , seq(1,7)*0.05+0.5, c(1,5,10,20,50,100,"# reads")) - - par("new"=T) # add boxplot on top - boxplot(psi~SNP, ylab="", xlab="", xaxt="n", yaxt="n",boxwex=0.35, xlim=c(-0.25,2.75), ylim=ylim.range,at=sort(unique(SNP[!is.na(SNP)])) ,border=gray(0.45),col=rgb(1,1,1,alpha=0.6) ,outline=FALSE) - - -dev.off() - -} - - -######################## -## Add a new function for MAF calculation based on the SNP genotypes. (by Yungang Xu, 0618/2019) -## Calculate the allele frequeny from a given list of genotypes, e.g. c(0,0,0,1,2,2,1,1,1,1). -## Arguments -## x a vector of genotypes, across a group of individuals.It may have only one type of genotype -## af a logical value indicating whether return the allele frequencies for all alleles. By default (af = FALSE), only returns the minor allele requency. -## Value -## a numeric mubmer or vectector contains the allele requencies. - -maf <- function(x, af = FALSE){ - stat <- as.matrix(table(x)) - N <- sum(stat)*2 - if ("0" %in% row.names(stat)){ - aa <- stat["0",] - }else{ - aa <-0 - } - if ("1" %in% row.names(stat)){ - ab <- stat["1",] - }else{ - ab <-0 - } - if ("2" %in% row.names(stat)){ - bb <- stat["2",] - }else{ - bb <-0 - } - - freq.a <- (aa*2+ab)/N - freq.b <- (bb*2+ab)/N - names(freq.a) <- "a" - names(freq.b) <- "b" - if(af){ - return(c(freq.a, freq.b)) - }else{ - return(min(freq.a, freq.b)) - } - -} - - -######################## - diff --git a/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLGWAS.oneexon.R b/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLGWAS.oneexon.R deleted file mode 100644 index cc025bf..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLGWAS.oneexon.R +++ /dev/null @@ -1,457 +0,0 @@ -#!/usr/bin/env Rscript --slave --vanilla - -############# -# sQTL signal of one single exon overlapping GWAS signal - - -args = commandArgs(TRUE) - -if(length(args) < 4){ - cat("No arguments supplied. Usage:\n") - helpstr = "sQTLGWAS.oneexon.R exoninforfile gwascatalogfile geneannotation.gtf exonindex [pvaluecutoff] -## pvaluecutoff defines the signficance cutoff of GLiMMPS for plotting, which is optional, default = 1e-5 - -Example : -sQTLGWAS.oneexon.R alltype/bychrs/exonsinfor.plink.5reads.chr2.txt ../gwascatalog.txt ~/Research/sQTL/GLiMMPScode/reference/Ensembl_r65.gtf.gff 1117 3.7e-6 -\n" - cat (helpstr) - quit(status=1) - -} - -exoninforfile <- "alltype/bychrs/exonsinfor.plink.5reads.chr2.txt" -gwasfile <-"../gwascatalog.txt" -gtffile <- "~/Research/sQTL/GLiMMPScode/reference/Ensembl_r65.gtf.gff" -exonindex <- 1117 - -pval.cutoff<- 10^(-5) ## default pvalue cutoff for signfiance of GLiMMPS -## pval.cutoff <- 3.7*10^(-6) - -PLINKPATH="~/bin/" - -exoninforfile = args[1] -gwasfile = args[2] -gtffile= args[3] -exonindex = as.numeric(args[4]) - - -if(length(args) >=5 ){ -pval.cutoff<- as.numeric(args[5]) -} - - - -cat ("Input parameters:\n") -cat(c("exoninforfile = ",exoninforfile,"\ngwasfile = ",gwasfile,"\ngtffile = ",gtffile, "\nexonindex = " ,exonindex,"\n") ) # -cat (paste("pvalue cutoff =",pval.cutoff,"\n") ) - - - - -################################ -# read in the exon information - -exon.infor <- read.csv(exoninforfile,header=T,sep="\t") -exonIDs <- as.character(exon.infor[,1]) -chrstr <- exon.infor[exonindex, 4] -chr<- sub("chr","",chrstr) -targetexonID <- exonIDs[exonindex] - -SNPstartpos <- exon.infor[exonindex,6] -200000 -SNPendpos <- exon.infor[exonindex,7] +200000 -exonnames <- exonIDs - -#print (c(exoninforfile, genofile, phenofile, phenofile.IJ)) -#print (exonindex) - -print(c(exonindex, targetexonID)) -############## - -TMPGENODIR <- "tmpgeno" -TMPASSODIR <- "tmpasso" -PLINKPATH <- "" # "~/bin/" - -source("GLiMMPS_functions.R") - - - -tmpgenoprefix <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,sep="") - - -############################################################################################################################################################ -# -############## -# read in genotype information -tmpgenofile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".raw",sep="") -tmpmapfile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".map",sep="") -map <- as.matrix(read.csv(tmpmapfile, header=F,sep="\t")) -colnames(map) <- c("Chr","SNPID","cM","Pos") - - -############################################################################################################################################################ -# check if there is any SNP pass the pval.cutoff, and plot psi against the significant sQTL SNP that is closest to the target exon Splice Site. -################# - - -# read in the SNP allele information -SNPinforfile <- paste(tmpgenoprefix,".hwe2",sep="") -SNP.infor <- read.csv(SNPinforfile,header=T,sep=" ") - -genesymbol <- as.character(exon.infor[exonindex,3]) -exon.coordinate <- as.character(exon.infor[exonindex,17]) - - -################# -# read in the pvalue file -pvalfile <- paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".asso",sep="") -pvals.sig <- read.table(pvalfile,header=T,sep="\t",as.is=T) # colClasses=list("'integer","character", "integer", "double","double","double","double","double","double") ) - -################### -# annotate SNPs -exon.start= exon.infor[exonindex,6] -exon.end = exon.infor[exonindex,7] -exon.strand = as.character(exon.infor[exonindex,5]) - -snpdist2exon <- cbind((pvals.sig$Pos-exon.start), (pvals.sig$Pos-exon.end)) - -dist2exon <- rep(NA, length(pvals.sig[,1])) -dist2exon <- apply(abs(snpdist2exon),1,min,na.rm=T) -dist2exon[(snpdist2exon[,1] > 0) & (snpdist2exon[,2] <= 0)] <- 0 # inside exon, set distance to 0. - -dist2exon2 <- dist2exon - -allsnps.anno <- SNP.annotation( pvals.sig$Pos, exon.start, exon.end,exon.strand) -write.table(cbind(map,allsnps.anno ) , paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".snpanno",sep=""),row.names=F,col.names=T, quote=F,sep="\t" ) - - -dist2exon2[allsnps.anno=="5SS" |allsnps.anno=="3SS" |allsnps.anno=="3SSAG" |allsnps.anno=="5SSGT" ] <- (-9) # at SS, set to (-9). - - -## significant sQTL SNP that are closest to the exon Splice site. - -#pval.cutoff<- 10^(-5) - -outputdir <- paste(TMPASSODIR,"/chr",chr,"/",sep="") -minsnp <- seq(1,length(pvals.sig[,1]))[( pvals.sig$pvals.glmm <= pval.cutoff & !is.na( pvals.sig$pvals.glmm) )] -if(length(minsnp)>0) { ## if there is signficant sQTL SNP - cat(paste("There are ",length(minsnp), "significant SNPs passed the pvalue.cutoff=",pval.cutoff,"!\n")) - - if(length(minsnp)>1) { minsnp <- minsnp[rank(dist2exon2[minsnp] ,ties.method="first")==1] } ## significant sQTL SNP that are closest to the exon Splice site. - - mostsig.snpID <- as.character(pvals.sig[minsnp,2]) - - # psi.geno.plot (y,n,mostsig.snpID,genesymbol, targetexonID,exon.coordinate, outputdir) -} - - -cat(paste("Splicing SNP:",mostsig.snpID,"\n")) - - - -################################################################################################ -# -# substract the gene annotation - -ensemblID <- as.character(exon.infor[exonindex,2]) - -onegene.gtffile <- paste(TMPASSODIR,"/chr",chr,"/",ensemblID,".gtf",sep="") -subgtfcmd <- paste ("grep ",ensemblID," ", gtffile,">",onegene.gtffile,sep="") -system(subgtfcmd) - -gene.gtf <- read.csv(onegene.gtffile , sep="\t",header=F) -#gene.gtf <- read.csv(paste(HOME,"/ITPA.gtf",sep=""), sep="\t",header=F) - -exon.gtf <- gene.gtf[ gene.gtf[,3]=="exon",] -CDS.gtf <- gene.gtf[ gene.gtf[,3]=="CDS",] - -transcripts.names <- unique(exon.gtf[,9]) - -annoexon.indexes <- rep(0, length(transcripts.names)) - -for ( ti in 1: length(transcripts.names)) { - - subexon.gtf <- exon.gtf [ exon.gtf[,9]== transcripts.names[ti] ,] - subexon.gtf <- subexon.gtf [order(subexon.gtf[,4] ),] - oneindex <- seq(1, length(subexon.gtf[,1])) [subexon.gtf[,4]== (exon.start+1) & subexon.gtf[,5]==exon.end ] - if (length(oneindex)>0) { - annoexon.indexes[ti] <- oneindex - } -} -# Exon index in the gene annotation -annoexon.geneindex <- max(annoexon.indexes,na.rm=T) - -#################################################### -# gwasSNP infor - -GWASsnp.infor <- read.csv(gwasfile,header=T,sep="\t") - -gwasSNPs<-as.character(GWASsnp.infor$SNPs) - -write.table(unique(gwasSNPs),"gwascatalog_SNPids.txt",col.names=F,row.names=F,quote=F) - -LDoutfile <- paste(tmpgenoprefix, "_LDgwasSNP_rsq0.8_200kb",sep="") - -plinkcmmd <- paste(PLINKPATH, "plink --file ",tmpgenoprefix ," --r2 --ld-snp-list gwascatalog_SNPids.txt --ld-window-kb 200 --ld-window 99999 --ld-window-r2 0.8 --out ", LDoutfile,sep="") -print(plinkcmmd) -system(plinkcmmd) - - -gwasSNPsLD <- read.table(paste(LDoutfile,".ld",sep=""),header=T, as.is=T) ## - -################ -# read in the pvalue file -pvalfile <- paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".asso",sep="") -pvals.sig <- read.table(pvalfile,header=T,sep="\t",as.is=T) - -#pval.cutoff <- 3.7*10^(-6) -sQTLSNPs <- pvals.sig$SNPID[( pvals.sig$pvals.glmm <= pval.cutoff & !is.na( pvals.sig$pvals.glmm) )] - - -gwaspeakSNP.ID<- unique(gwasSNPsLD$SNP_A[is.element(gwasSNPsLD$SNP_B, sQTLSNPs)]) - - -subgwasinfor <- GWASsnp.infor[ match(gwaspeakSNP.ID, GWASsnp.infor$SNPs),] -unique(subgwasinfor$Disease.Trait) #3 traits -#[1] Chronic lymphocytic leukemia Multiple sclerosis Crohn's disease - -gwasTrait <- as.character(subgwasinfor$Disease.Trait) -gwaspeakSNP.pos <- (subgwasinfor$Chr_pos) - -LDSNPs.combine <- unique(c( gwaspeakSNP.ID,gwasSNPsLD$SNP_B )) - -cat("\nOverlapping GWAS signal: \n") -print(subgwasinfor) - -write.table(subgwasinfor, paste(TMPASSODIR,"/chr",chr,"/",targetexonID,"_OverlappingGWAS.infor.txt",sep=""),row.names=F,col.names=T, quote=F,sep="\t" ) -################################################ -# GWAS signal overlapping sQTL figure - - -######## SP140 ### - - -#exonindex <- seq(1, length(exonIDs))[ exonIDs==targetexonID] -allexon.infor <-exon.infor - -chrstr <- allexon.infor[exonindex, 4] -strand<- allexon.infor[exonindex, 5] - -chr<- sub("chr","",chrstr) - -print(c(exonindex, targetexonID)) - -genename <- as.character(allexon.infor$geneSymbol[exonindex]) -genomebrowser.coor <- as.character(allexon.infor$TargetExon[exonindex]) -Exon.start <- allexon.infor[exonindex,6] -Exon.end <- allexon.infor[exonindex,7] -upstreamExon.start <- allexon.infor[exonindex,10] -upstreamExon.end <- allexon.infor[exonindex,11] - -downstreamExon.start <- allexon.infor[exonindex,12] -downstreamExon.end <- allexon.infor[exonindex,13] - - - -####################################################### -# pvalue plotting. - -## read in the snp annotation file - -tmpsnpfile <- paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".snpanno",sep="") - -tmpsnp.infor <- read.csv(tmpsnpfile, header=T,sep="\t") -snp.poss<- tmpsnp.infor[,4] -tmpSNPIDs<- as.character(tmpsnp.infor[,2]) - - -pch.tmp2 <- rep(19,length(tmpsnp.infor[,1])) -mostsig.snpID #Most likely causal sQTL SNP: rs28445040 -pch.tmp2[is.element(tmpsnp.infor[,2] ,mostsig.snpID) ] <- 17 ### most closest to SS signficant sQTL SNP is code as "triangle" - -pch.tmp2[ is.element(tmpsnp.infor[,2] , gwaspeakSNP.ID)] <- 8 ### GWAS Peak SNP is code as "*" -pch.tmp2[!is.element(as.character(tmpsnp.infor[,2]),LDSNPs.combine)] <-1 ## those not in LD or overlapping GWAS SNPs are in empty dots, instead of solid dots - -tmpSNPIDs<- as.character(tmpsnp.infor[,2]) - - - -pch.col <- rep(grey(0.6), length(tmpsnp.infor[,1])) -pch.col[is.element(as.character(tmpsnp.infor[,2]),LDSNPs.combine)] <- 1 ## those in LD or overlapping GWAS SNPs are in black - - -pch.col[ is.element(tmpsnp.infor[,2] , gwaspeakSNP.ID)] <- "blue" -pch.col[is.element(tmpsnp.infor[,2] ,mostsig.snpID)] <- "red" - - -######### -pvals <- pvals.sig$pvals.glmm #Chr SNPID Pos glm, glm.quasibin, glmm, lm, beta in 8 columns - -################# -## plotting -FDR0.1 <- pval.cutoff# 3.7*10^(-6) #significance cutoff - - -#################### -# Plotting only the neighboring 20kb region - - -pdf ( paste(TMPASSODIR,"/chr",chr, "/GWASoverlap_20kbpeak","_",genename,"_",targetexonID,".pdf",sep="") ,height=8, width=8) - -plotregion <- 20000 - -xlimt <- c(Exon.start-plotregion, Exon.end+plotregion)/(10^6) # tmpsnp.infor[,3], na.rm=T) - -#xlimt <- c(min( c(CDS.gtf[,4], CDS.gtf[,5]),na.rm=T), max( c(CDS.gtf[,4], CDS.gtf[,5]),na.rm=T)) - -ylimt <-c (0, max(-log10(pvals), na.rm=T)) - -layout(matrix(1:3,3,1), heights = c(rep(4,1),0.35,rep(1,1))) - - -par(mar=c(4,5,3,1), bg="transparent", cex.lab=2,font.lab=1,las=1,cex.axis=2,cex.main=2 ) -main = genename # paste("GWAS SNP:",gwaspeakSNP.ID, gwasTrait ) #paste("GWASpeak:",gwaspeakSNP.pos,gwaspeakSNP.ID, gwasTrait ) - -substar <- is.element(pch.tmp2,c(17,8)) -pchsize <-0.95 -if (plotregion==200000) { -pchsize <-0.5 -} -### plot sQTL pvalue -plot ( snp.poss[!substar]/(10^6), -log10(pvals[!substar]), xlab="Position (Mb)", ylab=expression(paste(-phantom(),"log"[10],"(P)")), main= main, pch= pch.tmp2[!substar] , col=pch.col[!substar], xlim=xlimt, ylim=ylimt, cex=pchsize) -#abline(h= -log10(typeIerror0.01), lty=2) -abline(h= -log10(FDR0.1), lty=2,col=1) -abline(v=Exon.start/(10^6) ,lty=2, col=2,lwd=0.5) -abline(v=Exon.end/(10^6) ,lty=2, col=2,lwd=0.5) -# abline(v=Exon.start-2000 ,lty=2,lwd=0.5) -# abline(v=Exon.end + 2000 ,lty=2, lwd=0.5) - -par("new"=T) -plot ( snp.poss[substar]/(10^6), -log10(pvals[substar]), xlab="", ylab="", main= "", pch= pch.tmp2[substar] ,col=pch.col[substar], xlim=xlimt, ylim=ylimt, cex=pchsize*3,xaxt="n", yaxt="n") - -#### add GWAS SNP ID -if (length(gwaspeakSNP.ID)>0) { -text (gwaspeakSNP.pos/(10^6) ,-log10(pvals[is.element(snp.poss,gwaspeakSNP.pos) ]) -0.6 , labels= gwaspeakSNP.ID , adj=c(0,0.5),col=4,cex=2) - -legend("bottomleft" , legend= paste(gwaspeakSNP.ID, ":", gwasTrait,sep=" "), cex= 2, text.col= 4, bg = 'gray90' ,inset = .05 ) -} - -## Splicing SNP ID -text ( tmpsnp.infor[pch.tmp2==17,4]/(10^6) +diff(xlimt)/100 , -log10(pvals[pch.tmp2==17]) -1.25 , labels= as.character(tmpsnp.infor[pch.tmp2==17,2]) ,xpd=TRUE, adj=c(0,0.5),col=2,cex=2) - -legend(xlimt[1], ylimt[2]*0.8 , legend=c("Splicing SNP",paste("GWAS SNP",sep="")), pch=c(17,8) , col = c("red","blue"), cex=1.5, pt.cex= 0.95*3 ) - - -zoomregion<- max(abs(Exon.start-upstreamExon.start), abs(downstreamExon.end-Exon.end)) +1000 -#zoomregion<-3000 - -#################### -# zoom in lines - -main= ""# paste(genename, targetexonID) # genomebrowser.coor, -par(mar=c(0,5,0,1)) -plot(x=NULL, y=NULL, yaxt="n", xaxt="n", xlab=NA, ylab=NA, xlim=xlimt, ylim=c(-1,1), frame.plot =FALSE, main=main, cex=0.5) -lines(c(xlimt[1], (Exon.start-zoomregion)/(10^6)), c(-1,1),lty=2) -lines(c(xlimt[2], (Exon.end+zoomregion)/(10^6)), c(-1,1),lty=2) -# - -# ################ -# # plot SNPIDs, -# -# plot(x=NULL, y=NULL, yaxt="n", xaxt="n", xlab=NA, ylab=NA, xlim=xlimt, ylim=c(0,1.2), frame.plot = FALSE, main=main, cex=0.5) -# lines( x=xlimt, y=c(0,0) ) -# points ( snp.poss, rep( 0, length(tmpsnp.infor[,1])), pch="|",col=pch.col) -# -# # text ( tmpsnp.infor[,3], rep( 0.2, length(tmpsnp.infor[,1])), tmpSNPIDs, srt=90,adj=0,cex=0.8, col=pch.col) -# legend("topright", legend= c("HAPMAP","1000G"), text.col=c(2,1),bty="n",cex=1.5) -# -### plot exon structure ## - -plotregion <- zoomregion - -xlimt <- c(Exon.start-plotregion, Exon.end+plotregion) # tmpsnp.infor[,3], na.rm=T) -ylimt <-c (-2,2) - -main= "" # paste(genename, genomebrowser.coor) # targetexonID) # genomebrowser.coor, -par(mar=c(0,5,0,1)) -plot(x=NULL, y=NULL, yaxt="n", xaxt="n", xlab=NA, ylab=NA, xlim=xlimt, ylim=c(-1,0.8), frame.plot =FALSE, main=main, cex=0.5) -#lines(c(xlimt[1], Exon.start-2000), c(-1,1),lty=2) -#lines(c(xlimt[2], Exon.end+2000), c(-1,1),lty=2) -# - - -################# -# plot all exon structure of the gene -exonheight<-0.35 - -#if ( xlimt[2] < max( c(CDS.gtf[,4], CDS.gtf[,5])) ) { text ( xlimt[2] ,0, labels=c("//") ,xpd=TRUE, adj=c(0,0.5)) } - -#text ( upstreamExon.start-250 ,0, labels=c("//") ,xpd=TRUE, adj=c(1,0.5),cex=2) -# text ( xlimt[2] ,0, labels=c("//") ,xpd=TRUE, adj=c(0,0.5),cex=2) - -############ -# add GWAS SNP label -#lines( x=c(upstreamExon.start-250, downstreamExon.end+250 ), y=c(0,0), col=1,lwd=2) -#lines( x=c(xlimt[1], upstreamExon.start-350 ), y=c(0,0), col=1,lwd=2,lty=2) -#lines( x=c(downstreamExon.end+350, xlimt[2] ), y=c(0,0), col=1,lwd=2,lty=2) - - -lines( x=c(xlimt[1], upstreamExon.start ), y=c(0,0), col=1,lwd=2) -lines( x=c(upstreamExon.start, xlimt[2] ), y=c(0,0), col=1,lwd=2) -text ( xlimt[1] ,0, labels=c("//") ,xpd=TRUE, adj=c(1,0.5),cex=2) -text ( xlimt[2] ,0, labels=c("//") ,xpd=TRUE, adj=c(0,0.5),cex=2) - -# text ( xlimt[1] +100 ,0, labels=c("|") ,xpd=TRUE, adj=c(0,0.5), cex=2.5, col=4) -# text ( xlimt[1] +100 ,0.35, labels= gwaspeakSNP.ID[1] ,xpd=TRUE, adj=c(0,0.5),col=4,cex=2) -# text ( xlimt[1] +130 ,-0.05, labels= paste(round( (gwaspeakSNP.pos[2]-gwaspeakSNP.pos[1])/1000,1),"Kb") ,xpd=TRUE, adj=c(0,1),col=1,cex=2) # "18.5-3 Kb" -# -# text ( xlimt[1] +1300 ,0, labels=c("|") ,xpd=TRUE, adj=c(0,0.5), cex=2.5, col=4) -# text ( xlimt[1] +900 ,-0.35, labels= gwaspeakSNP.ID[2] ,xpd=TRUE, adj=c(0,0.5),col=4,cex=2) -# text ( xlimt[1] +1350 ,0.05, labels= paste(round( (upstreamExon.start-gwaspeakSNP.pos[2])/1000,1),"Kb") ,xpd=TRUE, adj=c(0,0),col=1,cex=2) # "3 Kb" -# -# text ( xlimt[2] -100 ,0, labels=c("|") ,xpd=TRUE, adj=c(0,0.5), cex=2.5, col=4) -# text ( xlimt[2] -130 ,0.35, labels= gwaspeakSNP.ID[3] ,xpd=TRUE, adj=c(0.5,0.5),col=4,cex=2) -# text ( xlimt[2] -120 ,-0.2, labels= paste(round( abs(downstreamExon.end-gwaspeakSNP.pos[3])/1000,1),"Kb") ,xpd=TRUE, adj=c(1,1),col=1,cex=2) # "18.5 Kb" -# - -### Add splicing SNP label -text ( tmpsnp.infor[pch.tmp2==17,4] ,exonheight, labels=c("|") ,xpd=TRUE, adj=c(0,0.5), cex=2.5, col=2) -text ( tmpsnp.infor[pch.tmp2==17,4]-250 ,exonheight+0.42, labels= as.character(tmpsnp.infor[pch.tmp2==17,2]) ,xpd=TRUE, adj=c(0,0.5),col=2,cex=2) - - - -#points ( tmpsnp.infor[pch.tmp2==17,4], exonheight, pch="|",col=1, cex=2) - -# text ( tmpsnp.infor[,3], rep( 0.2, length(tmpsnp.infor[,1])), tmpSNPIDs, srt=90,adj=0,cex=0.8, col=pch.col) - -############### -# plot the target exon and neighboring 2 exons - - -rect(xleft=Exon.start, xright=Exon.end, ybottom=-exonheight, ytop=exonheight, col=2, border = 2,lwd=1) - -rect(xleft=upstreamExon.start, xright=upstreamExon.end, ybottom=-exonheight, ytop=exonheight, col=1, border = 1,lwd=1) - -rect(xleft=downstreamExon.start, xright=downstreamExon.end, ybottom=-exonheight, ytop=exonheight, col=1, border = 1,lwd=1) - -text ( (Exon.start+Exon.end)/2, -0.8, paste("Exon",annoexon.geneindex), col=2,cex=2) # Exon 7 -text ( (upstreamExon.start+upstreamExon.end)/2, -0.8, paste("Exon",annoexon.geneindex-1), col=1,cex=2) # Exon 6 -text ( (downstreamExon.start+downstreamExon.end)/2, -0.8, paste("Exon",annoexon.geneindex+1), col=1,cex=2) # Exon 8 - -### UJ -lines( x=c(upstreamExon.end, (Exon.start+upstreamExon.end)/2 ), y=c(exonheight,0.75), col=1,lwd=1) -lines( x=c(Exon.start, (Exon.start+upstreamExon.end)/2 ) , y=c(exonheight,0.75), col=1,lwd=1) -## DJ -lines( x=c(Exon.end, (Exon.end+downstreamExon.start)/2 ), y=c(exonheight,0.75), col=1,lwd=1) -lines( x=c(downstreamExon.start, (Exon.end+downstreamExon.start)/2 ) , y=c(exonheight,0.75), col=1,lwd=1) -## SJ -lines( x=c(upstreamExon.end, (upstreamExon.end+downstreamExon.start)/2 ), y=c(-exonheight,-0.75), col=1,lwd=1,lty=1) -lines( x=c(downstreamExon.start, (upstreamExon.end+downstreamExon.start)/2 ) , y=c(-exonheight,-0.75), col=1,lwd=1,lty=1) - -#lines( x=c(Exon.start-2000, Exon.start), y=c(0,0), col=4) -#lines( x=c(Exon.end, Exon.end+2000), y=c(0,0),col=4) - -#rect( xleft=Exon.start-plotregion,xright= Exon.start, ybottom=-0.01,ytop=0.01, col=4,border=4) -#rect( xleft=Exon.end,xright= Exon.end+plotregion, ybottom=-0.01,ytop=0.01, col=4,border= 4) - - -dev.off() diff --git a/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.onechrom.parallel.R b/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.onechrom.parallel.R deleted file mode 100644 index 8023403..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.onechrom.parallel.R +++ /dev/null @@ -1,322 +0,0 @@ -#!/usr/bin/env Rscript --slave --vanilla - -############# -# sQTL analysis for SNPs within 200kb window of one single exon -# Last update: 06/19/2019 (by Yungang Xu, yungang.xu@hotmail.com) -# Enabled parallel runs for whole chromosome (nested parallel for each exon) -## Arguments needed for program listed at the command line -# exoninforfile -# alljunctionfile -# IJfile -# genoplinkfile -# exonindex -# pval.cutoff [optional] -# maf.cutoff [optional] - -library(foreach) ## requred for for each -library(doParallel) ## requred for for each -#library(parallel) ## requred for mclapply -args = commandArgs(TRUE) -options(warn=-1) - -exoninforfile = args[1] -alljunctionfile = args[2] -IJfile= args[3] -genoplinkfile= args[4] -#exonindex = as.numeric(args[5]) - -pval.cutoff<- 10^(-5) ## default pvalue cutoff for signfiance of GLiMMPS -maf.cutoff <- 0.05 -#if(length(args) >=6 ){ -#pval.cutoff<- as.numeric(args[6]) -#} -if(length(args) >=6 ){ -maf.cutoff <- as.numeric(args[6]) -} - - -if(maf.cutoff == 0) warning("The minor allele frequency (MAF) cutoff was set to 0, which may lead to unconverged fitting and kill the run.") -# ########### -# # testing -# exoninforfile = "alltype/bychrs/exonsinfor.plink.5reads.chr2.txt" -# alljunctionfile = "alltype/bychrs/plink.5reads.allreads.chr2.txt" -# IJfile = "alltype/bychrs/plink.5reads.IJ.chr2.txt" -# genotypeplinkfile = "../Genotype/HAPMAP1000G.CheungCEU41.chr2" -# exonindex = 1117 -# -# # end testing -# ########## - - -phenofile.IJ = IJfile -phenofile = alljunctionfile -genofile = genoplinkfile -cat ("You'r running sQTLregress.onechrom.parallel.R\n") -cat ("Input parameters:\n") -cat(c("exoninforfile = ",exoninforfile,"\nalljunctionfile = ",phenofile,"\nIJfile = ",phenofile.IJ,"\ngenotypeplinkfile = ",genofile, "\n") ) # c(exoninforfile, phenofile, phenofile.IJ, genofile,exonindex ))) -cat (paste("pvalue cutoff =",pval.cutoff,"\n") ) -cat (paste("MAF cutoff =",maf.cutoff,"\n") ) - -TMPGENODIR <- "parallel.tmpgeno" -TMPASSODIR <- "parallel.tmpasso" -PLINKPATH <- "" # "~/bin/" -library(lme4) - -source("/mnt/isilon/xing_lab/xuy5/GLIMMPS/Geuvadis/GLiMMPScode/Rscripts/GLiMMPS_functions.R") - -### create output directory ## -if (!file.exists( TMPGENODIR )) {system(paste ("mkdir",TMPGENODIR)) } -if (!file.exists( TMPASSODIR )) {system(paste ("mkdir",TMPASSODIR)) } - - - - - -################################ -# read in the exon information -exon.infor <- read.csv(exoninforfile,header=T,sep="\t") -exonIDs <- as.character(exon.infor[,1]) - -numCores <- detectCores() -## function to run on one exons -doEvent <- function(exonindex){ - chrstr <- exon.infor[exonindex, 4] - chr<- sub("chr","",chrstr) - targetexonID <- exonIDs[exonindex] - - SNPstartpos <- exon.infor[exonindex,6] -200000 - SNPendpos <- exon.infor[exonindex,7] +200000 - exonnames <- exonIDs - - #print (c(exoninforfile, genofile, phenofile, phenofile.IJ)) - #print (exonindex) - - #print(c(exonindex, targetexonID)) - ############## - cmmd <- paste("mkdir ",TMPGENODIR,"/chr",chr,sep="") - if (!file.exists( paste(TMPGENODIR,"/chr",chr,sep="")) ) {system(cmmd)} - ############################################################################################################################################### - # read in phenotype expression levels in plink format - allreads.data <- read.csv( phenofile ,header=T,sep="\t") - nsample <- dim(allreads.data)[1] - nexons <-dim(allreads.data)[2] -2 - - allreads.matrix <- allreads.data[,seq(1,nexons)+2 ] - IDs.pheno <- as.character(allreads.data[,2]) - #phenonames <- colnames(allreads.matrix) - - print(nexons) - - IJ.data <- read.csv( phenofile.IJ ,header=T,sep="\t") - IJ.matrix <- IJ.data[,seq(1,nexons)+2 ] - - - ################################################ - #### use plink to extract 1000G genotype around +/- 200kb of each exon - - - tmpgenoprefix <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,sep="") - - if (!file.exists(paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".raw",sep="") ) ) { - plinkcmmd <- paste(PLINKPATH, "plink --tfile ", genofile , " --noweb --recode --chr ",chr, " --from-bp ", SNPstartpos," --to-bp ", SNPendpos, " --out ",tmpgenoprefix,sep="") - system(plinkcmmd) - - tmpmapfile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".map",sep="") - if (file.exists(tmpmapfile) ){ - - plinkcmmd <- paste(PLINKPATH, "plink --tfile ", genofile , " --noweb --recodeA --chr ",chr, " --from-bp ", SNPstartpos," --to-bp ", SNPendpos, " --out ", tmpgenoprefix,sep="") - print(plinkcmmd) - system(plinkcmmd) - - plinkcmmd <- paste(PLINKPATH, "plink --file ",tmpgenoprefix ," --hardy --out " , tmpgenoprefix ,sep="") - print(plinkcmmd) - system(plinkcmmd) - - awkcmmd <- paste("awk '/ALL|TEST/ {print $1,$2,$3,$4,$5,$6,$7,$8}' ",tmpgenoprefix ,".hwe>",tmpgenoprefix,".hwe2",sep="") - print(awkcmmd) - system(awkcmmd) - - cleancmmd <- paste("rm -rf ",tmpgenoprefix,".log ",tmpgenoprefix,"*nosex ", tmpgenoprefix,".hwe", sep="") - system(cleancmmd) - - } - } - - - - ############################################################################################################################################################ - # do the association for all SNPs near the target exon - # - print("start assocation...") - - cmmd <- paste("mkdir ",TMPASSODIR,"/chr",chr,sep="") - if (!file.exists( paste(TMPASSODIR,"/chr",chr,sep="")) ) {system(cmmd)} - - - pi <- seq(1,nexons)[exonnames==targetexonID] - cat ( c("Run associations for Exon", pi,exonnames[pi]) ) - ############## - # read in genotype information - tmpgenofile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".raw",sep="") - tmpmapfile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".map",sep="") - map <- as.matrix(read.csv(tmpmapfile, header=F,sep="\t")) - colnames(map) <- c("Chr","SNPID","cM","Pos") - - genoplink <- read.csv(tmpgenofile, header=T,sep=" ", na.strings=c("NA")) - - IDs.geno <- as.character(genoplink[,2]) - IDs.common <- IDs.geno[is.element(IDs.geno, IDs.pheno)] - nsnps <- dim(genoplink)[2] -6 - sub.geno <- match(IDs.common , IDs.geno) - geno <- as.matrix(genoplink[sub.geno,seq(1, nsnps)+6]) - - #print(numCores) - cat(paste(" sQTL analysis for ", nsnps,"SNPs in",numCores,"threads...\n")) - - ### only take those individuals with genotypes, and sort the phenotype to be the same order as in the genotype matrix - sub <- match(IDs.common , IDs.pheno) - #IDs.pheno[sub] - n<- allreads.matrix[sub,pi] - y <- IJ.matrix[sub,pi] - - - pvals.glm <- rep(NA,nsnps) - pvals.glmquasi <- rep(NA,nsnps) - pvals.glmm <- rep(NA,nsnps) - pvals.lm <- rep(NA,nsnps) - pvals.glmmWald <- rep(NA,nsnps) - - betas <- rep(NA,nsnps) - - ############### - # start association for psi~ SNP for every SNP. - - #nSkipped=0 - - - system.time({ ## get the run time, start - - doFit <- function(gi){ - - #foreach ( gi=1: nsnps) %dopar% { #701:720){ # - # cat(paste("SNP ", gi,"\n")) - ### data association - SNP = geno[,gi] - snp.maf <- maf(SNP) - # if( snp.maf < maf.cutoff){ - # currentN <- nSkipped - # nSkipped <- currentN+1 - # cat(paste(" SNP", colnames(geno)[gi], "has same genotype across individuals. Skipped (",nSkipped,")!\n")) - # return(c(NA, NA, NA, NA, NA, NA, snp.maf)) - # } - # print(SNP) - onedata <- list(n=n,y=y, SNP=SNP) - - results.glm <- glm.sQTL ( onedata ) - - #pvals.glm[gi] <- results.glm$pval - - results.quasi <- glmquasi.sQTL ( onedata ) - #pvals.glmquasi[gi] <- results.quasi$pval - - ############### - # GLiMMPS method - results.glmm <- glmm.sQTL ( onedata ) - #pvals.glmm[gi] <- results.glmm$pval - #betas[gi] <- results.glmm$betas[2] - ############ - results.lm <- lm.sQTL ( onedata ) - #pvals.lm[gi] <- results.lm$pval - - results.glmmWald <- try(suppressMessages(glmmWald.sQTL ( onedata )), TRUE) - if(isTRUE(class(results.glmmWald)=="try-error")){ - glmmWald.pvals <- NA - return(c(results.glm$pval,results.quasi$pval,results.glmm$pval, results.lm$pval, glmmWald.pvals, results.glmm$betas[2],snp.maf)) - }else{ - glmmWald.pvals <- results.glmmWald$pval - } - return(c(results.glm$pval,results.quasi$pval,results.glmm$pval, results.lm$pval, glmmWald.pvals, results.glmm$betas[2],snp.maf)) - } - pvals <- mclapply(1:nsnps, doFit, mc.cores = numCores) - pvals.matrix <- do.call(rbind, pvals) - - #cat(paste(nSkipped,"SNPs","have the MAFs less than the cutoff",maf.cutoff," Skipped!\n")) - #print(dim(pvals.matrix)) - #print(dim(map)) - tmpout <- cbind(map[,c(1,2,4)], formatC(pvals.matrix[,1:5],format="e",digits=3), round(pvals.matrix[,6:7],4)) - - colnames(tmpout) <- c("Chr","SNPID","Pos","pvals.glm","pvals.glmquasi","pvals.glmm","pvals.lm","pvals.glmmWald","Beta", "MAF") - write.table(tmpout , paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".1chrom.parallel.asso",sep=""),row.names=F,col.names=T, quote=F,sep="\t" ) - # pvals.glmquasi,pvals.glmm,pvals.lm, pvals.glmmWald - - ###################### - cat("Finished association!... \nChecking signficant sQTL SNPs and plot one signficant SNP that is closest to the target exon Splice Site\n") - - - - ############################################################################################################################################################ - # check if there is any SNP pass the pval.cutoff, and plot psi against the significant sQTL SNP that is closest to the target exon Splice Site. - ################# - - - # read in the SNP allele information - SNPinforfile <- paste(tmpgenoprefix,".hwe2",sep="") - SNP.infor <- read.csv(SNPinforfile,header=T,sep=" ") - - genesymbol <- as.character(exon.infor[exonindex,3]) - exon.coordinate <- as.character(exon.infor[exonindex,17]) - - - ################# - # read in the pvalue file - pvalfile <- paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".1chrom.parallel.asso",sep="") - pvals.sig <- read.table(pvalfile,header=T,sep="\t",as.is=T) # colClasses=list("'integer","character", "integer", "double","double","double","double","double","double") ) - - ################### - # annotate SNPs - exon.start= exon.infor[exonindex,6] - exon.end = exon.infor[exonindex,7] - exon.strand = as.character(exon.infor[exonindex,5]) - - snpdist2exon <- cbind((pvals.sig$Pos-exon.start), (pvals.sig$Pos-exon.end)) - - dist2exon <- rep(NA, length(pvals.sig[,1])) - dist2exon <- apply(abs(snpdist2exon),1,min,na.rm=T) - dist2exon[(snpdist2exon[,1] > 0) & (snpdist2exon[,2] <= 0)] <- 0 # inside exon, set distance to 0. - - dist2exon2 <- dist2exon - - allsnps.anno <- SNP.annotation( pvals.sig$Pos, exon.start, exon.end,exon.strand) - write.table(cbind(map,allsnps.anno ) , paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".snpanno",sep=""),row.names=F,col.names=T, quote=F,sep="\t" ) - - - dist2exon2[allsnps.anno=="5SS" |allsnps.anno=="3SS" |allsnps.anno=="3SSAG" |allsnps.anno=="5SSGT" ] <- (-9) # at SS, set to (-9). - - - ## significant sQTL SNP that are closest to the exon Splice site. - - #pval.cutoff<- 10^(-5) - - outputdir <- paste(TMPASSODIR,"/chr",chr,"/",sep="") - suppressWarnings(minsnp <- seq(1,length(pvals.sig[,1]))[(as.numeric(pvals.sig$pvals.glmm) <= pval.cutoff & !is.na( as.numeric(pvals.sig$pvals.glmm)))]) - if(length(minsnp)>0) { ## if there is signficant sQTL SNP - cat(paste("There are ",length(minsnp), "significant SNPs passed the pvalue.cutoff=",pval.cutoff,"!\n")) - - if(length(minsnp)>1) { minsnp <- minsnp[rank(dist2exon2[minsnp] ,ties.method="first")==1] } ## significant sQTL SNP that are closest to the exon Splice site. - - mostsig.snpID <- as.character(pvals.sig[minsnp,2]) - - psi.geno.plot (y,n,mostsig.snpID,genesymbol, targetexonID,exon.coordinate, outputdir) - cat("Finished plotting!\n") - }else{ - cat(paste("There is no significant SNPs passed the pvalue.cutoff=",pval.cutoff,"!\n")) - } - })## get the run time end - - - ## psi.geno.plot (y,n,"rs28445040",genesymbol, targetexonID,exon.coordinate) -} - -#doEvent(exonindex) -cat(paste("Running in ", numCores, "threads..." )) -mclapply(1:length(exonIDs),doEvent, mc.cores = numCores) \ No newline at end of file diff --git a/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.oneexon.R b/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.oneexon.R deleted file mode 100644 index fcdf0f9..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.oneexon.R +++ /dev/null @@ -1,315 +0,0 @@ -#!/usr/bin/env Rscript --slave --vanilla - -############# -# sQTL analysis for SNPs within 200kb window of one single exon -# Last update: 06/19/2019 (by Yungang Xu, yungang.xu@hotmail.com) - -## Arguments needed for program listed at the command line -# exoninforfile -# alljunctionfile -# IJfile -# genoplinkfile -# exonindex -# pval.cutoff [optional] -# maf.cutoff [optional] -source("/mnt/isilon/xing_lab/xuy5/GLIMMPS/Geuvadis/GLiMMPScode/Rscripts/GLiMMPS_functions.new.R") - -args = commandArgs(TRUE) -options(warn=-1) -if(length(args) < 5){ - cat("No arguments supplied. Usage:\n") - helpstr = "sQTLregress.oneexon.R exoninforfile alljunctionfile InclusionJunctionfile genoplinkfile exonindex [pvaluecutoff] -## pvaluecutoff defines the signficance cutoff of GLiMMPS for plotting, which is optional, default = 1e-5 - -Example : -sQTLregress.oneexon.R alltype/bychrs/exonsinfor.plink.5reads.chr2.txt alltype/bychrs/plink.5reads.allreads.chr2.txt alltype/bychrs/plink.5reads.IJ.chr2.txt ../Genotype/HAPMAP1000G.CheungCEU41.chr2 1117 1e-5 -\n" - cat (helpstr) - ##supply default values - exonindex = 1 - quit(status=1) - -} - - -exoninforfile = args[1] -alljunctionfile = args[2] -IJfile= args[3] -genoplinkfile= args[4] -exonindex = as.numeric(args[5]) - -pval.cutoff<- 10^(-5) ## default pvalue cutoff for signfiance of GLiMMPS -maf.cutoff <- 0.05 -#if(length(args) >=6 ){ -#pval.cutoff<- as.numeric(args[6]) -#} -if(length(args) >=6 ){ -maf.cutoff <- as.numeric(args[6]) -} - - -if(maf.cutoff == 0) warning("The minor allele frequency (MAF) cutoff was set to 0, which may lead to unconverged fitting and kill the run.") -# ########### -# # testing -# exoninforfile = "alltype/bychrs/exonsinfor.plink.5reads.chr2.txt" -# alljunctionfile = "alltype/bychrs/plink.5reads.allreads.chr2.txt" -# IJfile = "alltype/bychrs/plink.5reads.IJ.chr2.txt" -# genotypeplinkfile = "../Genotype/HAPMAP1000G.CheungCEU41.chr2" -# exonindex = 1117 -# -# # end testing -# ########## - - -phenofile.IJ = IJfile -phenofile = alljunctionfile -genofile = genoplinkfile -cat ("You'r rnning sQTLregress.oneexon.R:\n") -cat ("Input parameters:\n") -cat(c("exoninforfile = ",exoninforfile,"\nalljunctionfile = ",phenofile,"\nIJfile = ",phenofile.IJ,"\ngenotypeplinkfile = ",genofile, "\nexonindex = " ,exonindex,"\n") ) # c(exoninforfile, phenofile, phenofile.IJ, genofile,exonindex ))) -cat (paste("pvalue cutoff =",pval.cutoff,"\n") ) -cat (paste("MAF cutoff =",maf.cutoff,"\n") ) - - - - -################################ -# read in the exon information - -exon.infor <- read.csv(exoninforfile,header=T,sep="\t") -exonIDs <- as.character(exon.infor[,1]) -chrstr <- exon.infor[exonindex, 4] -chr<- sub("chr","",chrstr) -targetexonID <- exonIDs[exonindex] - -SNPstartpos <- exon.infor[exonindex,6] -200000 -SNPendpos <- exon.infor[exonindex,7] +200000 -exonnames <- exonIDs - -#print (c(exoninforfile, genofile, phenofile, phenofile.IJ)) -#print (exonindex) - -print(c(exonindex, targetexonID)) -############## - -TMPGENODIR <- "rerun.tmpgeno" -TMPASSODIR <- "rerun.tmpasso" -PLINKPATH <- "" # "~/bin/" -library(lme4) - - -############################################################################################################################################### -# read in phenotype expression levels in plink format -allreads.data <- read.csv( phenofile ,header=T,sep="\t") -nsample <- dim(allreads.data)[1] -nexons <-dim(allreads.data)[2] -2 - -allreads.matrix <- allreads.data[,seq(1,nexons)+2 ] -IDs.pheno <- as.character(allreads.data[,2]) -#phenonames <- colnames(allreads.matrix) - -print(nexons) - -IJ.data <- read.csv( phenofile.IJ ,header=T,sep="\t") -IJ.matrix <- IJ.data[,seq(1,nexons)+2 ] - -### create output directory ## -if (!file.exists( TMPGENODIR )) {system(paste ("mkdir",TMPGENODIR)) } -if (!file.exists( TMPASSODIR )) {system(paste ("mkdir",TMPASSODIR)) } - -cmmd <- paste("mkdir ",TMPGENODIR,"/chr",chr,sep="") -if (!file.exists( paste(TMPGENODIR,"/chr",chr,sep="")) ) {system(cmmd)} - - -################################################ -#### use plink to extract 1000G genotype around +/- 200kb of each exon - - - tmpgenoprefix <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,sep="") - - if (!file.exists(paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".raw",sep="") ) ) { - plinkcmmd <- paste(PLINKPATH, "plink --tfile ", genofile , " --noweb --recode --chr ",chr, " --from-bp ", SNPstartpos," --to-bp ", SNPendpos, " --out ",tmpgenoprefix,sep="") - system(plinkcmmd) - - tmpmapfile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".map",sep="") - if (file.exists(tmpmapfile) ){ - - plinkcmmd <- paste(PLINKPATH, "plink --tfile ", genofile , " --noweb --recodeA --chr ",chr, " --from-bp ", SNPstartpos," --to-bp ", SNPendpos, " --out ", tmpgenoprefix,sep="") - print(plinkcmmd) - system(plinkcmmd) - - plinkcmmd <- paste(PLINKPATH, "plink --file ",tmpgenoprefix ," --hardy --out " , tmpgenoprefix ,sep="") - print(plinkcmmd) - system(plinkcmmd) - - awkcmmd <- paste("awk '/ALL|TEST/ {print $1,$2,$3,$4,$5,$6,$7,$8}' ",tmpgenoprefix ,".hwe>",tmpgenoprefix,".hwe2",sep="") - print(awkcmmd) - system(awkcmmd) - - cleancmmd <- paste("rm -rf ",tmpgenoprefix,".log ",tmpgenoprefix,"*nosex ", tmpgenoprefix,".hwe", sep="") - system(cleancmmd) - - } - } - - - -############################################################################################################################################################ -# do the association for all SNPs near the target exon -# -print("start assocation...") - -cmmd <- paste("mkdir ",TMPASSODIR,"/chr",chr,sep="") -if (!file.exists( paste(TMPASSODIR,"/chr",chr,sep="")) ) {system(cmmd)} - - - pi <- seq(1,nexons)[exonnames==targetexonID] - cat ( c("Run associations for Exon", pi,exonnames[pi]) ) -############## -# read in genotype information -tmpgenofile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".raw",sep="") -tmpmapfile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".map",sep="") -map <- as.matrix(read.csv(tmpmapfile, header=F,sep="\t")) -colnames(map) <- c("Chr","SNPID","cM","Pos") - -genoplink <- read.csv(tmpgenofile, header=T,sep=" ", na.strings=c("NA")) - -IDs.geno <- as.character(genoplink[,2]) -IDs.common <- IDs.geno[is.element(IDs.geno, IDs.pheno)] -nsnps <- dim(genoplink)[2] -6 -sub.geno <- match(IDs.common , IDs.geno) -geno <- as.matrix(genoplink[sub.geno,seq(1, nsnps)+6]) -cat(paste(" sQTL analysis for ", nsnps,"SNPs ...\n")) - -### only take those individuals with genotypes, and sort the phenotype to be the same order as in the genotype matrix -sub <- match(IDs.common , IDs.pheno) -#IDs.pheno[sub] - n<- allreads.matrix[sub,pi] - y <- IJ.matrix[sub,pi] - - - pvals.glm <- rep(NA,nsnps) - pvals.glmquasi <- rep(NA,nsnps) - pvals.glmm <- rep(NA,nsnps) - pvals.lm <- rep(NA,nsnps) - pvals.glmmWald <- rep(NA,nsnps) - snp.mafs <- rep(NA, nsnps) - betas <- rep(NA,nsnps) - -############### -# start association for psi~ SNP for every SNP. -nSkipped=0 -system.time({ -for ( gi in 1: nsnps) { #701:720){ # - # cat(paste("SNP ", gi,"\n")) - ### data association - SNP= geno[,gi] - snp.mafs[gi] <- maf(SNP) - if( snp.mafs[gi] < maf.cutoff){ - nSkipped=nSkipped+1 - #cat(paste("Warning: SNP", colnames(geno)[gi], "has same genotype across individuals. Skipped (",nSkipped,")!\n")) - next - } - onedata <- list(n=n,y=y, SNP=SNP) - - results.glm <- glm.sQTL ( onedata ) - - pvals.glm[gi] <- results.glm$pval - - results.quasi <- glmquasi.sQTL ( onedata ) - pvals.glmquasi[gi] <- results.quasi$pval - - ############### - # GLiMMPS method - results.glmm <- glmm.sQTL ( onedata ) - pvals.glmm[gi] <- results.glmm$pval - betas[gi] <- results.glmm$betas[2] - ############ - results.lm <- lm.sQTL ( onedata ) - pvals.lm[gi] <- results.lm$pval - - results.glmmWald <- try(suppressMessages(glmmWald.sQTL( onedata )), TRUE) - if(isTRUE(class(results.glmmWald)=="try-error")){ - pvals.glmmWald[gi] <- NA -# cat(paste("AS event:",exonindex, targetexonID," SNP:", colnames(geno)[gi], "!\n")) - next - }else{ - pvals.glmmWald[gi] <- results.glmmWald$pval - } - - } - -cat(paste("Warning: ",nSkipped,"SNPs","have the MAFs less than the cutoff",maf.cutoff,"!\n")) - -tmpout <- cbind(map[,c(1,2,4)], formatC(pvals.glm,format="e",digits=3), formatC(pvals.glmquasi,format="e",digits=3), formatC(pvals.glmm,format="e",digits=3), formatC(pvals.lm,format="e",digits=3), formatC(pvals.glmmWald,format="e",digits=3), round(betas,3), round(snp.mafs,4)) - -colnames(tmpout) <- c("Chr","SNPID","Pos","pvals.glm","pvals.glmquasi","pvals.glmm","pvals.lm","pvals.glmmWald","Beta", "MAF") -write.table(tmpout , paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".asso",sep=""),row.names=F,col.names=T, quote=F,sep="\t" ) -# pvals.glmquasi,pvals.glmm,pvals.lm, pvals.glmmWald - -###################### -cat("Finished association!... \nChecking signficant sQTL SNPs and plot one signficant SNP that is closest to the target exon Splice Site\n") - - - -############################################################################################################################################################ -# check if there is any SNP pass the pval.cutoff, and plot psi against the significant sQTL SNP that is closest to the target exon Splice Site. -################# - - -# read in the SNP allele information -SNPinforfile <- paste(tmpgenoprefix,".hwe2",sep="") -SNP.infor <- read.csv(SNPinforfile,header=T,sep=" ") - -genesymbol <- as.character(exon.infor[exonindex,3]) -exon.coordinate <- as.character(exon.infor[exonindex,17]) - - -################# -# read in the pvalue file -pvalfile <- paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".asso",sep="") -pvals.sig <- read.table(pvalfile,header=T,sep="\t",as.is=T) # colClasses=list("'integer","character", "integer", "double","double","double","double","double","double") ) - -################### -# annotate SNPs -exon.start= exon.infor[exonindex,6] -exon.end = exon.infor[exonindex,7] -exon.strand = as.character(exon.infor[exonindex,5]) - -snpdist2exon <- cbind((pvals.sig$Pos-exon.start), (pvals.sig$Pos-exon.end)) - -dist2exon <- rep(NA, length(pvals.sig[,1])) -dist2exon <- apply(abs(snpdist2exon),1,min,na.rm=T) -dist2exon[(snpdist2exon[,1] > 0) & (snpdist2exon[,2] <= 0)] <- 0 # inside exon, set distance to 0. - -dist2exon2 <- dist2exon - -allsnps.anno <- SNP.annotation( pvals.sig$Pos, exon.start, exon.end,exon.strand) -write.table(cbind(map,allsnps.anno ) , paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".snpanno",sep=""),row.names=F,col.names=T, quote=F,sep="\t" ) - - -dist2exon2[allsnps.anno=="5SS" |allsnps.anno=="3SS" |allsnps.anno=="3SSAG" |allsnps.anno=="5SSGT" ] <- (-9) # at SS, set to (-9). - - -## significant sQTL SNP that are closest to the exon Splice site. - -#pval.cutoff<- 10^(-5) - -outputdir <- paste(TMPASSODIR,"/chr",chr,"/",sep="") -suppressWarnings(minsnp <- seq(1,length(pvals.sig[,1]))[(as.numeric(pvals.sig$pvals.glmm) <= pval.cutoff & !is.na( as.numeric(pvals.sig$pvals.glmm)))]) -if(length(minsnp)>0) { ## if there is signficant sQTL SNP - cat(paste("There are ",length(minsnp), "significant SNPs passed the pvalue.cutoff=",pval.cutoff,"!\n")) - - if(length(minsnp)>1) { minsnp <- minsnp[rank(dist2exon2[minsnp] ,ties.method="first")==1] } ## significant sQTL SNP that are closest to the exon Splice site. - - mostsig.snpID <- as.character(pvals.sig[minsnp,2]) - - psi.geno.plot (y,n,mostsig.snpID,genesymbol, targetexonID,exon.coordinate, outputdir) - cat("Finished plotting!\n") -}else{ - cat(paste("There is no significant SNPs passed the pvalue.cutoff=",pval.cutoff,"!\n")) -} -}) - -## psi.geno.plot (y,n,"rs28445040",genesymbol, targetexonID,exon.coordinate) - diff --git a/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.oneexon.parallel.R b/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.oneexon.parallel.R deleted file mode 100644 index 0e0fd66..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/Rscripts/sQTLregress.oneexon.parallel.R +++ /dev/null @@ -1,334 +0,0 @@ -#!/usr/bin/env Rscript --slave --vanilla - -############# -# sQTL analysis for SNPs within 200kb window of one single exon -# Last update: 06/19/2019 (by Yungang Xu, yungang.xu@hotmail.com) -# Enabled parallel runs -## Arguments needed for program listed at the command line -# exoninforfile -# alljunctionfile -# IJfile -# genoplinkfile -# exonindex -# pval.cutoff [optional] -# maf.cutoff [optional] - -#library(foreach) ## requred for for each -#library(doParallel) ## requred for for each -library(parallel) ## requred for mclapply -args = commandArgs(TRUE) -options(warn=-1) -if(length(args) < 5){ - cat("No arguments supplied. Usage:\n") - helpstr = "sQTLregress.oneexon.R exoninforfile alljunctionfile InclusionJunctionfile genoplinkfile exonindex [pvaluecutoff] -## pvaluecutoff defines the signficance cutoff of GLiMMPS for plotting, which is optional, default = 1e-5 - -Example : -sQTLregress.oneexon.R alltype/bychrs/exonsinfor.plink.5reads.chr2.txt alltype/bychrs/plink.5reads.allreads.chr2.txt alltype/bychrs/plink.5reads.IJ.chr2.txt ../Genotype/HAPMAP1000G.CheungCEU41.chr2 1117 1e-5 -\n" - cat (helpstr) - ##supply default values - exonindex = 1 - quit(status=1) - -} - - -exoninforfile = args[1] -alljunctionfile = args[2] -IJfile= args[3] -genoplinkfile= args[4] -exonindex = as.numeric(args[5]) - -pval.cutoff<- 10^(-5) ## default pvalue cutoff for signfiance of GLiMMPS -maf.cutoff <- 0.05 -n.cores <- 100 ## the number of threads for parallel running -if(length(args) >=6 ){ -n.cores <- as.numeric(args[6]) -if(!is.numeric(n.cores)){ - cat("Warning: the input for threads number is not a valid number; set to defualt (100);") - n.cores <- 100 -} -} -if(length(args) >=6 ){ -maf.cutoff <- as.numeric(args[6]) -} - - -if(maf.cutoff == 0) warning("The minor allele frequency (MAF) cutoff was set to 0, which may lead to unconverged fitting and kill the run.") -# ########### -# # testing -# exoninforfile = "alltype/bychrs/exonsinfor.plink.5reads.chr2.txt" -# alljunctionfile = "alltype/bychrs/plink.5reads.allreads.chr2.txt" -# IJfile = "alltype/bychrs/plink.5reads.IJ.chr2.txt" -# genotypeplinkfile = "../Genotype/HAPMAP1000G.CheungCEU41.chr2" -# exonindex = 1117 -# -# # end testing -# ########## - - -phenofile.IJ = IJfile -phenofile = alljunctionfile -genofile = genoplinkfile -cat("You are running sQTLregress.oneexon.parallel.R\n") -cat ("Input parameters:\n") -cat(c("exoninforfile = ",exoninforfile,"\nalljunctionfile = ",phenofile,"\nIJfile = ",phenofile.IJ,"\ngenotypeplinkfile = ",genofile, "\nexonindex = " ,exonindex,"\n") ) # c(exoninforfile, phenofile, phenofile.IJ, genofile,exonindex ))) -cat (paste("pvalue cutoff =",pval.cutoff,"\n") ) -cat (paste("MAF cutoff =",maf.cutoff,"\n") ) - - - -################################ -# read in the exon information - -exon.infor <- read.csv(exoninforfile,header=T,sep="\t") -exonIDs <- as.character(exon.infor[,1]) -chrstr <- exon.infor[exonindex, 4] -chr<- sub("chr","",chrstr) -targetexonID <- exonIDs[exonindex] - -SNPstartpos <- exon.infor[exonindex,6] -200000 -SNPendpos <- exon.infor[exonindex,7] +200000 -exonnames <- exonIDs - -#print (c(exoninforfile, genofile, phenofile, phenofile.IJ)) -#print (exonindex) - -print(c(exonindex, targetexonID)) -############## - -TMPGENODIR <- "parallel.tmpgeno" -TMPASSODIR <- "parallel.tmpasso" -PLINKPATH <- "" # "~/bin/" -library(lme4) - -source("/mnt/isilon/xing_lab/xuy5/GLIMMPS/Geuvadis/GLiMMPScode/Rscripts/GLiMMPS_functions.R") - -############################################################################################################################################### -# read in phenotype expression levels in plink format -allreads.data <- read.csv( phenofile ,header=T,sep="\t") -nsample <- dim(allreads.data)[1] -nexons <-dim(allreads.data)[2] -2 - -allreads.matrix <- allreads.data[,seq(1,nexons)+2 ] -IDs.pheno <- as.character(allreads.data[,2]) -#phenonames <- colnames(allreads.matrix) - -print(nexons) - -IJ.data <- read.csv( phenofile.IJ ,header=T,sep="\t") -IJ.matrix <- IJ.data[,seq(1,nexons)+2 ] - -### create output directory ## -if (!file.exists( TMPGENODIR )) {system(paste ("mkdir",TMPGENODIR)) } -if (!file.exists( TMPASSODIR )) {system(paste ("mkdir",TMPASSODIR)) } - -cmmd <- paste("mkdir ",TMPGENODIR,"/chr",chr,sep="") -if (!file.exists( paste(TMPGENODIR,"/chr",chr,sep="")) ) {system(cmmd)} - - -################################################ -#### use plink to extract 1000G genotype around +/- 200kb of each exon - - - tmpgenoprefix <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,sep="") - - if (!file.exists(paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".raw",sep="") ) ) { - plinkcmmd <- paste(PLINKPATH, "plink --tfile ", genofile , " --noweb --recode --chr ",chr, " --from-bp ", SNPstartpos," --to-bp ", SNPendpos, " --out ",tmpgenoprefix,sep="") - system(plinkcmmd) - - tmpmapfile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".map",sep="") - if (file.exists(tmpmapfile) ){ - - plinkcmmd <- paste(PLINKPATH, "plink --tfile ", genofile , " --noweb --recodeA --chr ",chr, " --from-bp ", SNPstartpos," --to-bp ", SNPendpos, " --out ", tmpgenoprefix,sep="") - print(plinkcmmd) - system(plinkcmmd) - - plinkcmmd <- paste(PLINKPATH, "plink --file ",tmpgenoprefix ," --hardy --out " , tmpgenoprefix ,sep="") - print(plinkcmmd) - system(plinkcmmd) - - awkcmmd <- paste("awk '/ALL|TEST/ {print $1,$2,$3,$4,$5,$6,$7,$8}' ",tmpgenoprefix ,".hwe>",tmpgenoprefix,".hwe2",sep="") - print(awkcmmd) - system(awkcmmd) - - cleancmmd <- paste("rm -rf ",tmpgenoprefix,".log ",tmpgenoprefix,"*nosex ", tmpgenoprefix,".hwe", sep="") - system(cleancmmd) - - } - } - - - -############################################################################################################################################################ -# do the association for all SNPs near the target exon -# -print("start assocation...") - -cmmd <- paste("mkdir ",TMPASSODIR,"/chr",chr,sep="") -if (!file.exists( paste(TMPASSODIR,"/chr",chr,sep="")) ) {system(cmmd)} - - - pi <- seq(1,nexons)[exonnames==targetexonID] - cat ( c("Run associations for Exon", pi,exonnames[pi]) ) -############## -# read in genotype information -tmpgenofile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".raw",sep="") -tmpmapfile <- paste(TMPGENODIR,"/chr",chr,"/",targetexonID,".map",sep="") -map <- as.matrix(read.csv(tmpmapfile, header=F,sep="\t")) -colnames(map) <- c("Chr","SNPID","cM","Pos") - -genoplink <- read.csv(tmpgenofile, header=T,sep=" ", na.strings=c("NA")) - -IDs.geno <- as.character(genoplink[,2]) -IDs.common <- IDs.geno[is.element(IDs.geno, IDs.pheno)] -nsnps <- dim(genoplink)[2] -6 -sub.geno <- match(IDs.common , IDs.geno) -geno <- as.matrix(genoplink[sub.geno,seq(1, nsnps)+6]) -numCores <- detectCores() -print(numCores) -cat(paste(" sQTL analysis for ", nsnps,"SNPs in",numCores,"threads...\n")) - -### only take those individuals with genotypes, and sort the phenotype to be the same order as in the genotype matrix -sub <- match(IDs.common , IDs.pheno) -#IDs.pheno[sub] - n<- allreads.matrix[sub,pi] - y <- IJ.matrix[sub,pi] - - - pvals.glm <- rep(NA,nsnps) - pvals.glmquasi <- rep(NA,nsnps) - pvals.glmm <- rep(NA,nsnps) - pvals.lm <- rep(NA,nsnps) - pvals.glmmWald <- rep(NA,nsnps) - - betas <- rep(NA,nsnps) - -############### -# start association for psi~ SNP for every SNP. - -#nSkipped=0 - -system.time({ ## get the run time, start -doFit <- function(gi){ - -#foreach ( gi=1: nsnps) %dopar% { #701:720){ # - # cat(paste("SNP ", gi,"\n")) - ### data association - SNP = geno[,gi] - snp.maf <- maf(SNP) -# disabled the MAF filtering -# if( snp.maf < maf.cutoff){ -# currentN <- nSkipped -# nSkipped <- currentN+1 -# cat(paste(" SNP", colnames(geno)[gi], "has same genotype across individuals. Skipped (",nSkipped,")!\n")) -# return(c(NA, NA, NA, NA, NA, NA, snp.maf)) -# } - onedata <- list(n=n,y=y, SNP=SNP) - - results.glm <- glm.sQTL ( onedata ) - - #pvals.glm[gi] <- results.glm$pval - - results.quasi <- glmquasi.sQTL ( onedata ) - #pvals.glmquasi[gi] <- results.quasi$pval - - ############### - # GLiMMPS method - results.glmm <- glmm.sQTL ( onedata ) - #pvals.glmm[gi] <- results.glmm$pval - #betas[gi] <- results.glmm$betas[2] - ############ - results.lm <- lm.sQTL ( onedata ) - #pvals.lm[gi] <- results.lm$pval - - results.glmmWald <- try(suppressMessages(glmmWald.sQTL ( onedata )), TRUE) - if(isTRUE(class(results.glmmWald)=="try-error")){ - glmmWald.pvals <- NA - return(c(results.glm$pval,results.quasi$pval,results.glmm$pval, results.lm$pval, glmmWald.pvals, results.glmm$betas[2],snp.maf)) - }else{ - glmmWald.pvals <- results.glmmWald$pval - } - return(c(results.glm$pval,results.quasi$pval,results.glmm$pval, results.lm$pval, glmmWald.pvals, results.glmm$betas[2],snp.maf)) - } -pvals <- mclapply(1:nsnps, doFit, mc.cores = n.cores) -pvals.matrix <- do.call(rbind, pvals) - -#cat(paste(nSkipped,"SNPs","have the MAFs less than the cutoff",maf.cutoff," Skipped!\n")) -#print(dim(pvals.matrix)) -#print(dim(map)) -tmpout <- cbind(map[,c(1,2,4)], formatC(pvals.matrix[,1:5],format="e",digits=3), round(pvals.matrix[,6:7],4)) - -colnames(tmpout) <- c("Chr","SNPID","Pos","pvals.glm","pvals.glmquasi","pvals.glmm","pvals.lm","pvals.glmmWald","Beta", "MAF") -write.table(tmpout , paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".1exon.parallel.asso",sep=""),row.names=F,col.names=T, quote=F,sep="\t" ) -# pvals.glmquasi,pvals.glmm,pvals.lm, pvals.glmmWald - -###################### -cat("Finished association!... \nChecking signficant sQTL SNPs and plot one signficant SNP that is closest to the target exon Splice Site\n") - - - -############################################################################################################################################################ -# check if there is any SNP pass the pval.cutoff, and plot psi against the significant sQTL SNP that is closest to the target exon Splice Site. -################# - - -# read in the SNP allele information -SNPinforfile <- paste(tmpgenoprefix,".hwe2",sep="") -SNP.infor <- read.csv(SNPinforfile,header=T,sep=" ") - -genesymbol <- as.character(exon.infor[exonindex,3]) -exon.coordinate <- as.character(exon.infor[exonindex,17]) - - -################# -# read in the pvalue file -pvalfile <- paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".1exon.parallel.asso",sep="") -pvals.sig <- read.table(pvalfile,header=T,sep="\t",as.is=T) # colClasses=list("'integer","character", "integer", "double","double","double","double","double","double") ) - -################### -# annotate SNPs -exon.start= exon.infor[exonindex,6] -exon.end = exon.infor[exonindex,7] -exon.strand = as.character(exon.infor[exonindex,5]) - -snpdist2exon <- cbind((pvals.sig$Pos-exon.start), (pvals.sig$Pos-exon.end)) - -dist2exon <- rep(NA, length(pvals.sig[,1])) -dist2exon <- apply(abs(snpdist2exon),1,min,na.rm=T) -dist2exon[(snpdist2exon[,1] > 0) & (snpdist2exon[,2] <= 0)] <- 0 # inside exon, set distance to 0. - -dist2exon2 <- dist2exon - -allsnps.anno <- SNP.annotation( pvals.sig$Pos, exon.start, exon.end,exon.strand) -write.table(cbind(map,allsnps.anno ) , paste(TMPASSODIR,"/chr",chr,"/",targetexonID,".snpanno",sep=""),row.names=F,col.names=T, quote=F,sep="\t" ) - - -dist2exon2[allsnps.anno=="5SS" |allsnps.anno=="3SS" |allsnps.anno=="3SSAG" |allsnps.anno=="5SSGT" ] <- (-9) # at SS, set to (-9). - - -## significant sQTL SNP that are closest to the exon Splice site. - -#pval.cutoff<- 10^(-5) - -outputdir <- paste(TMPASSODIR,"/chr",chr,"/",sep="") -suppressWarnings(minsnp <- seq(1,length(pvals.sig[,1]))[(as.numeric(pvals.sig$pvals.glmm) <= pval.cutoff & !is.na( as.numeric(pvals.sig$pvals.glmm)))]) -if(length(minsnp)>0) { ## if there is signficant sQTL SNP - cat(paste("There are ",length(minsnp), "significant SNPs passed the pvalue.cutoff=",pval.cutoff,"!\n")) - - if(length(minsnp)>1) { minsnp <- minsnp[rank(dist2exon2[minsnp] ,ties.method="first")==1] } ## significant sQTL SNP that are closest to the exon Splice site. - - mostsig.snpID <- as.character(pvals.sig[minsnp,2]) - - psi.geno.plot (y,n,mostsig.snpID,genesymbol, targetexonID,exon.coordinate, outputdir) - cat("Finished plotting!\n") -}else{ - cat(paste("There is no significant SNPs passed the pvalue.cutoff=",pval.cutoff,"!\n")) -} -})## get the run time end - - -## psi.geno.plot (y,n,"rs28445040",genesymbol, targetexonID,exon.coordinate) - - diff --git a/GLIMMPS_pipline/GLiMMPScode/Rscripts/summarystat_exonmin5.R b/GLIMMPS_pipline/GLiMMPScode/Rscripts/summarystat_exonmin5.R deleted file mode 100644 index 8133138..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/Rscripts/summarystat_exonmin5.R +++ /dev/null @@ -1,236 +0,0 @@ -#!/usr/bin/env Rscript --slave --vanilla - -############ -# read in files - -setwd("./") -args <- commandArgs(T) -type <- "alltype" -PROJECTTITLE <- args[1] #### Change this to your project title in the config.GLiMMPS.txt file - -syscmmd <- paste("cp AScounts/",PROJECTTITLE,".",type,".exoninfor.txt", " AScounts/",PROJECTTITLE,".",type,".exoninforshort.txt" ,sep="") -cat (syscmmd) -system( syscmmd ) - -CEU.exoninfor <- read.csv( paste("AScounts/",PROJECTTITLE,".",type,".exoninforshort.txt",sep=""),header=T,sep="\t",row.names=1) - - AStype <- sapply( strsplit(rownames(CEU.exoninfor),split="_"), "[[",1) - TargetExon <- paste(CEU.exoninfor[,4],CEU.exoninfor[,3],":",CEU.exoninfor[,5],"-",CEU.exoninfor[,6],sep="") - AlternativeExon <- paste(CEU.exoninfor[,4],CEU.exoninfor[,3],":",CEU.exoninfor[,7],"-",CEU.exoninfor[,8],sep="") - AlternativeExon[ AStype == "A5SS"| AStype=="A3SS" ] <- paste(CEU.exoninfor[,4],CEU.exoninfor[,3],":",CEU.exoninfor[,9],"-",CEU.exoninfor[,10],sep="")[ AStype == "A5SS"| AStype=="A3SS" ] - ExonID <- rownames(CEU.exoninfor) - write.table(cbind(ExonID, CEU.exoninfor, AStype, TargetExon, AlternativeExon), paste("AScounts/",PROJECTTITLE,".",type,".exoninfor.txt",sep=""),col.names=T, row.names=F,sep="\t", quote=F) - - - -CEU.exoninfor <- read.csv( paste("AScounts/",PROJECTTITLE,".",type,".exoninfor.txt",sep=""),header=T,sep="\t",row.names=1) - - - -#### filter out those with really short exons (mappable length =0) -validjunc <- (CEU.exoninfor$IncFormLen >0 & CEU.exoninfor$SkipFormLen >0) -CEU.exoninfor<- CEU.exoninfor[validjunc,] - -CEU_IJ <- read.csv( paste("AScounts/",PROJECTTITLE,".",type,".IJ.txt",sep=""),header=T,sep="\t",row.names=1) -CEU_IJ <- CEU_IJ[validjunc,] - -nsample <- length(CEU_IJ[1,]) -nexons <- length(CEU_IJ[,1]) - -IJ.matrix <- as.matrix(CEU_IJ) - - -CEU_SJ <- read.csv(paste("AScounts/",PROJECTTITLE,".",type,".SJ.txt",sep=""),header=T,sep="\t",row.names=1) -CEU_SJ <- CEU_SJ[validjunc,] - -SJ.matrix <- as.matrix(CEU_SJ) - - -#title <- as.matrix(read.csv("title.txt",header=F,sep="\t")) -CEUIDs <- colnames(CEU_IJ) - -if (!file.exists(type) ) {system(paste("mkdir ",type))} - -setwd(type) -########################## -# - -AStype <- sapply( strsplit(rownames(CEU.exoninfor),split="_"), "[[",1) -# for type SE and RI, effective number of Inclusion Junction reads should be divided by 2, because of 2 possible inlcusion junction (upstream and downstream), and only one possible skipping junction. -IJ.matrix[AStype=="SE",] <- ceiling((IJ.matrix[AStype=="SE",])/2) -IJ.matrix[AStype=="RI",] <- ceiling((IJ.matrix[AStype=="RI",])/2) - -allreads.matrix <- IJ.matrix+SJ.matrix - -newpsi <- IJ.matrix/allreads.matrix - - - - -#uniquepsi <- function(x) { return (length(unique(x[!is.na(x)]))) } - -#psicounts <- apply(newpsi,1,uniquepsi) -maxpsi <- apply(newpsi,1,max,na.rm=T) -minpsi <- apply(newpsi,1,min,na.rm=T) -psirange <- (maxpsi - minpsi) -psirange[is.na(psirange) | psirange<=0 | psirange>1] <- 0 - -rownames(newpsi) <- rownames(CEU_SJ) -colnames(newpsi) <- CEUIDs - - -medianpsi <- apply(newpsi,1,median,na.rm=T) -meanpsi <- apply(newpsi,1,mean,na.rm=T) -meanallreads <- apply(allreads.matrix,1,mean,na.rm=T) -medianallreads <- apply(allreads.matrix,1,median,na.rm=T) - -one.matrix <- (newpsi != medianpsi & (!is.na(newpsi))) -onepsi.all <- apply(one.matrix, 1, sum) - -############ - -pdf(paste("hist_juncreads.pdf",sep="")) -par(mfrow=c(2,2)) -zero.matrix <- (allreads.matrix ==0) -zerocounts.all <- apply(zero.matrix, 1, sum) -hist(zerocounts.all, xlab="# Individuals", main="Exons with no junction reads") - -zero.matrix <- (allreads.matrix >=10) -zerocounts.all <- apply(zero.matrix, 1, sum) -hist(zerocounts.all, xlab="# Individuals", main="Exons with >=10 junction reads") -zero.matrix <- (allreads.matrix >=20) -zerocounts.all <- apply(zero.matrix, 1, sum) -hist(zerocounts.all, xlab="# Individuals", main="Exons with >=20 junction reads") - -zero.matrix <- (allreads.matrix >=50) -zerocounts.all <- apply(zero.matrix, 1, sum) -hist(zerocounts.all, xlab="# Individuals", main="Exons with >=50 junction reads") - -dev.off() - - - -############# -# max, median, quantile allreads of each gene. -quantile.matrix <- apply(allreads.matrix, 1, quantile, probs = seq(0, 1, 0.1) ) -colnames(quantile.matrix) <- CEU_SJ[,1] - - -quantile.matrix1 <- quantile.matrix -quantile.matrix1[quantile.matrix1>10] <- 10 - - -pdf (paste("histpercentile_log10readcounts.pdf",sep=""), height=8.5, width=11.5) -par(mfrow=c(4,3)) -for ( i in 1:11) { - hist( log10(quantile.matrix[i,]), main = paste(rownames(quantile.matrix)[i], "percentile per exon") , xlab="log10(Total junction reads)" ) -} -dev.off() - -pdf (paste("histpercentile_readcounts.pdf",sep=""), height=8.5, width=11.5) -par(mfrow=c(4,3)) - -for ( i in 1:11) { - hist( (quantile.matrix1[i,]), main = paste(rownames(quantile.matrix)[i], "percentile per exon") , xlab="Total junction reads" ) -} - -dev.off() - - length(quantile.matrix[6,quantile.matrix[6,]>=10]) - length(quantile.matrix[6,quantile.matrix[3,]>=10]) - length(quantile.matrix[6,quantile.matrix[2,]>=10]) - length(quantile.matrix[6,quantile.matrix[1,]>=10]) - - - length(quantile.matrix[6,quantile.matrix[6,]>=20]) - length(quantile.matrix[6,quantile.matrix[3,]>=20]) - length(quantile.matrix[6,quantile.matrix[2,]>=20]) - length(quantile.matrix[6,quantile.matrix[1,]>=20]) - - - - -############ -autosomes <- paste("chr",c(seq(1,22), "X"),sep="") -medianallreads <- quantile.matrix[6,] - -sub0<- medianallreads>=5 & psirange>0.1 & is.element(CEU.exoninfor$chr , autosomes[seq(1,22)]) & onepsi.all >= 3 ## median of total junction reads >=10 ( (UJ+DJ/2 +SJ >=10 ) ; and at least some psi variation range >0.1## -print(dim(allreads.matrix[sub0,])) -## exons with median reads >=5 & psirange>0.1 & with >=3 individuals differ from the medianpsivalue - -### reorder by gene position ### -chrs <-as.numeric(sub("chr","",CEU.exoninfor$chr)) -chrs[CEU.exoninfor$chr=="chrX"] <-23 -chrs[CEU.exoninfor$chr=="chrY"] <-24 -chrs[is.na(chrs)] <- 25 # those not on chr 1-22, X and Y. - -poss <- chrs*10^9 + CEU.exoninfor[,5] + CEU.exoninfor[,6] - medianallreads/1000 # order by chr, pos, maxReads isoforms first for the same target exon - -targetexon <- paste( AStype, CEU.exoninfor[,3] , CEU.exoninfor[,5] , CEU.exoninfor[,6],sep=":") - - -sub <- sub0[order(poss)] & ( !duplicated( targetexon[order(poss)] )) # if target exons have multi AS paths, take only the major isoform AS events. - -subexoninfor <- CEU.exoninfor[order(poss),] [sub,] - -print(dim(subexoninfor)) - -geneIDs <- as.character(subexoninfor[,1]) -start200kb <- subexoninfor[,5] -200000 -end200kb <- subexoninfor[,6]+200000 - -if (!file.exists( "allchrs") ) {system("mkdir allchrs")} -if (!file.exists( "bychrs") ) {system("mkdir bychrs")} - - -write.table( cbind(subexoninfor) ,"allchrs/subexoninfor.txt",row.names=T,sep="\t",quote=F ) -write.table(allreads.matrix[order(poss),][sub,],"allchrs/suballreads.txt",row.names=T,sep="\t",quote=F ) -write.table(IJ.matrix[order(poss),][sub,],"allchrs/subIJreads.txt",row.names=T,sep="\t",quote=F ) -write.table(SJ.matrix[order(poss),][sub,],"allchrs/subSJreads.txt",row.names=T,sep="\t",quote=F ) -write.table(newpsi[order(poss),][sub,],"allchrs/subpsi.txt",row.names=T,sep="\t",quote=F ) - -write.table( cbind(CEU.exoninfor[,1], meanpsi,meanallreads,medianallreads,psirange)[order(poss),][sub,] ,"allchrs/meanpsi_meanN_medianN_psirange.txt",row.names=T,sep="\t",quote=F ) - - -####### -# output by chrs. -# exonifor; plink format for all junction reads and inclusionjunciton reads - -suballreads.matrix <- allreads.matrix[order(poss),][sub,] -subIJ.matrix <- IJ.matrix[order(poss),][sub,] -subSJ.matrix <- SJ.matrix[order(poss),][sub,] - - -for ( chr in 1:22) { - -subsetchr <- ( is.element(subexoninfor$chr, autosomes[chr]) ) -ExonID <- rownames(subexoninfor) -write.table( cbind(ExonID, subexoninfor, start200kb,end200kb)[subsetchr,] , paste("bychrs/exonsinfor.plink.5reads.",autosomes[chr],".txt",sep=""),row.names=F, quote=F,sep="\t" ) - - -output <- t(rbind(CEUIDs,CEUIDs, suballreads.matrix[subsetchr,] )) -colnames(output)[1] <- "FID" -colnames(output)[2] <- "IID" - dim(output) - -write.table(output , paste("bychrs/plink.5reads.allreads.",autosomes[chr],".txt",sep=""),row.names=F, quote=F,sep="\t" ) - -output <- t(rbind(CEUIDs,CEUIDs, subIJ.matrix[subsetchr,] )) -colnames(output)[1] <- "FID" -colnames(output)[2] <- "IID" - dim(output) - -write.table(output , paste("bychrs/plink.5reads.IJ.",autosomes[chr],".txt",sep=""),row.names=F, quote=F,sep="\t" ) - - -output <- t(rbind(CEUIDs,CEUIDs, subSJ.matrix[subsetchr,] )) -colnames(output)[1] <- "FID" -colnames(output)[2] <- "IID" - dim(output) - -write.table(output , paste("bychrs/plink.5reads.SJ.",autosomes[chr],".txt",sep=""),row.names=F, quote=F,sep="\t" ) - -} - - -################################# diff --git a/GLIMMPS_pipline/GLiMMPScode/config.GLiMMPS.txt b/GLIMMPS_pipline/GLiMMPScode/config.GLiMMPS.txt deleted file mode 100644 index 09aa4a6..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/config.GLiMMPS.txt +++ /dev/null @@ -1,37 +0,0 @@ -################################## -# This is the main configuration file that specify the parameters needed for data proceessing -# NOTE: before proceeding, change the parameters below accordingly so that GLiMMPS could run correctly at your system environment. -################################## -## short project title used to create filenames. To avoid errors, make it short and no space or special characters. -PROJECTTITLE = CEU -################################## -## Input file listing all the individual IDs in the population, which is used in all downstream analysis -IDFILE = /path/to/CEU.samples.txt -################################## -## sam folder path (before the individual folder ). -SAMPATH = /path/to/sam_unique/ -################################## -## uniquely mapped sequence sam file name under the directory of each individual ID. -SAMFILE = unique.sam -## The 3 parameters combination specify the bam file of each individual with id $ID in the IDFILE. -## $SAMPATH/$ID/$SAMFILE -################################## -### readLength -READLENGTH =75 -################################### -### junctionLength: it can be calculated as -### junctionLength = 2*(readLength-anchorLength) -# -### For example, if your readLength is 75 and you ran tophat with -a/--min-anchor-length 8 -### junction length becomes 2*(75-8) = 134 -JUNCTIONLENGTH = 13 -################################### -## Path to the misc python perl scripts -SCRIPTDIR = /path/to/GLiMMPScode/pythonperlsrcs -################################### -## annotation file in gtf format, matched with the genome version where the reads were aligned to -ANNOTATIONFILE = path/to/Genome/hg19/gencode.v19.annotation.gtf -################################### -## Path to plink command (optional, only necessary when plink is not in your $PATH environmental variable.) -PLINKDIR = ~/bin/ -################################### diff --git a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batch_allASevents.pl b/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batch_allASevents.pl deleted file mode 100644 index d2473a6..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batch_allASevents.pl +++ /dev/null @@ -1,92 +0,0 @@ -#!/usr/bin/perl -w -##　For all individuals in the population, obtain the all the possible Alternative Splicing (AS) events in the population based on either the gene annotation or the new splicing site identified from tophat. - - -if ( ($#ARGV+1) != 1 ) { - print "Usage: batch_allASevents.pl configfile \n"; - exit; -} -my $configfile =$ARGV[0]; - - - -####################### -# read in the configuration file -# - -# usage: readConfig("filename") -# returns: num. of parameters set -my @config_keys = (); - -sub readConfig -{ - my $filename=shift; - my $i=0; - - if(open(CONF, "<$filename")) - { - while() - { - # print $_ ; - if(/^\s*(\S+)\s*=\s*([^(#*|\s*)]+)/) - { - $$1=$2; - ++$i; - push @config_keys, $1 ; - } - } - return($i); - } - else - { - return(0); - } -} - - -########### -# -my $numparams = readConfig($configfile); -print "Read $numparams parameters from $configfile:\n\n" ; - -foreach $Config_key (@config_keys) { - - print "$Config_key = $$Config_key\n"; - -} - -open ( IN, "<$IDFILE"); ## The file list all Indivividual IDs in the population. -my @ids = ; - -#make directory unless it already exists -mkdir "ASEvents", 0777 unless -d "ASEvents"; -mkdir "temp", 0777 unless -d "temp"; - - - -################# -# write to a tmp script file - -print "Write a tmp script file : submit_ASevents\n\n"; - -open (OUT, ">submit_ASevents"); - -my $str = "python $SCRIPTDIR/processGTF.SAMs.py $ANNOTATIONFILE $PROJECTTITLE "; -print OUT $str ; -my $count =0 ; -#print "All individuals:\n"; -foreach my $id (@ids) { -chomp($id) ; -#print $id,"\n" ; - -$count++ ; -if ($count>1) {print OUT "," ; } -print OUT "$SAMPATH/$id/$SAMFILE" ; - -} -print OUT " temp" ; -close(OUT) ; - -system("chmod +x submit_ASevents"); -#system("./submit_ASevents"); - diff --git a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batch_getASreads.pl b/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batch_getASreads.pl deleted file mode 100644 index 1ec40af..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batch_getASreads.pl +++ /dev/null @@ -1,115 +0,0 @@ -#!/usr/bin/perl -w - -###################################################################### -# read in the configuration file -if ( ($#ARGV+1) != 1 ) { - print "Usage: batch_allASevents.pl configfile \n"; - exit; -} -my $configfile =$ARGV[0]; - - - -####################### -# read in the configuration file -# - -# usage: readConfig("filename") -# returns: num. of parameters set -my @config_keys = (); - -sub readConfig -{ - my $filename=shift; - my $i=0; - - if(open(CONF, "<$filename")) - { - while() - { - # print $_ ; - if(/^\s*(\S+)\s*=\s*([^(#*|\s*)]+)/) - { - $$1=$2; - ++$i; - push @config_keys, $1 ; - } - } - return($i); - } - else - { - return(0); - } -} - - -########### -# -my $numparams = readConfig($configfile); -print "Read $numparams parameters from $configfile:\n\n" ; - -foreach $Config_key (@config_keys) { - - print "$Config_key = $$Config_key\n"; - -} -###################################################################### - - -open ( IN, "<$IDFILE"); -my @ids ; -while ( my $line = ){ - chomp($line) ; - push @ids, $line ; -} -close (IN) ; - - -mkdir "tempconfig", 0777 unless -d "tempconfig"; - -$SAMPATHstr= $SAMPATH; -$SAMPATHstr=~s/\//\\\//g; -#print $SAMPATHstr ; - - -print "Write temporary configuration files to folder tempconfig/...\n"; - -open (OUT , ">submit_ASreadcounts"); - -foreach my $BASE1 (@ids) { - - #print $BASE1,"\n" ; - #print "Write temporary configuration file: tempconfig/config.$BASE1.junctions.txt\n"; - `cp $SCRIPTDIR/config.single.rMATS.txt tempconfig/config.$BASE1.junctions.txt`; - `perl -pi -e 's/BASE1/$BASE1/g' tempconfig/config.$BASE1.junctions.txt`; - `perl -pi -e 's/sampath/$SAMPATHstr/g' tempconfig/config.$BASE1.junctions.txt`; - `perl -pi -e 's/unique\.sam/$SAMFILE/g' tempconfig/config.$BASE1.junctions.txt`; - `perl -pi -e 's/PROJECTTITLE/$PROJECTTITLE/g' tempconfig/config.$BASE1.junctions.txt`; - `perl -pi -e 's/JUNCTIONLENGTH/$JUNCTIONLENGTH/g' tempconfig/config.$BASE1.junctions.txt`; - `perl -pi -e 's/READLENGTH/$READLENGTH/g' tempconfig/config.$BASE1.junctions.txt`; - - - #$cmmd = "perl -p -i -e 's/PROJECTTITLE/$PROJECTTITLE/g' tempconfig/config.$BASE1.junctions.txt" ; - #print $cmmd ; - #system($cmmd) ; - - - print OUT " -python $SCRIPTDIR/rMATS.processsUnique.singlesam.py tempconfig/config.$BASE1.junctions.txt -" ; -########### -## To make a qsub script to run on a cluster, write like this: -## qsub ~/pipelines/sge_Arg1 /opt/Python-2.7.2/bin/python $SCRIPTDIR/rMATS.processsUnique.singlesam.py tempconfig/config.$BASE1.junctions.txt - -} -close(OUT) ; - -print "Write a tmp script file : submit_ASreadcounts\n\n"; - - -system("chmod +x submit_ASreadcounts"); - -print "Running submit_ASreadcounts...\n\n"; - -#system("./submit_ASreadcounts"); diff --git a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batchtophat2uniq.pl b/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batchtophat2uniq.pl deleted file mode 100644 index 493a24d..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/batchtophat2uniq.pl +++ /dev/null @@ -1,25 +0,0 @@ -#!/usr/bin/perl -w - -##　For all individuals in the population, obtain the unique reads from the tophat mapping result file: accepted_hits.bam. - -open ( IN, " ; - -open (OUT, ">submit_uniquereads"); -foreach my $ceuid (@ceus) { -chomp($ceuid) ; -print $ceuid,"\n" ; - -#my $awkstr = q (awk -F"\t" '($2~"P"&&($6=="50M"||($6~"N"&&$6!~"D"&&$6!~"I"))) || NF<7') ; -my $awkstr = q (awk -F"\t" '($5=="255" &&($6=="50M"||($6~"N"&&$6!~"D"&&$6!~"I"))) || NF<7') ; -print OUT " -samtools view -hX -q 255 -o $ceuid/temp.sam $ceuid/accepted_hits.bam -$awkstr $ceuid/temp.sam > $ceuid/unique.sam - -" ; - -} -close(OUT) ; -# -system("chmod +x submit_uniquereads"); -system("./submit_uniquereads"); diff --git a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/config.single.rMATS.txt b/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/config.single.rMATS.txt deleted file mode 100644 index 6c416c5..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/config.single.rMATS.txt +++ /dev/null @@ -1,86 +0,0 @@ -# -## this is a configuration file for rMATS.processingUnique.sam script -# -## it will contain all the necessary informations for -# -## AS event file name -## data type (single-end or paired-end) -## base of the experiment -## list of sam files -## etc.. -## -# - -#################################### -### readLength -### 50 --readLength = READLENGTH -# - -#################################### -### junctionLength: it can be calculated as -### junctionLength = 2*(readLength-anchorLength) -# -### For example, if your readLength is 50 and you ran tophat with -a/--min-anchor-length 8 -### junction length becomes 2*(50-8) = 84 -# --junctionLength = JUNCTIONLENGTH -# - -##################################### -### AS file name -### AS event file names -### it currently support 5 AS event types -### full path here -# --SE = ASEvents/PROJECTTITLE.SE.txt --MXE = ASEvents/PROJECTTITLE.MXE.txt --A5SS = ASEvents/PROJECTTITLE.A5SS.txt --A3SS = ASEvents/PROJECTTITLE.A3SS.txt -#-AFE = ASEvents/PROJECTTITLE.AFE.txt -#-ALE = ASEvents/PROJECTTITLE.ALE.txt --RI = ASEvents/PROJECTTITLE.RI.txt - -#################################### -### experiment name --experiment = BASE1 -# - - -#################################### -### base name for sample_1 --base_1 = BASE1 - - -###################################### -### data type -### single-end or paired-end -# -#-dataType = single --dataType = paired -# - -###################################### -### sam file folder -### user can put all sam files in the same place (probably using "symbolic link") -### it is also okay to put a blank for this and put correct path under sam file name -#-samDir = /intern/xinglab/output/jwpark/ESRP_project/MB231_OE/231OE_PE/pairwiseComp_rMATS/samFiles --samDir = sampath -# - -# -##################################### -### sam file name -### for multiple replicates, use comma to separate each sam file -### it is okay to have different number of replicates per sample -### -#-input_1 = unique.ESRP.1.sam,unique.ESRP.2.sam --input_1 = BASE1/unique.sam - -################################### -### alert email -### email address to receive pipleline progress (error, warning, or end of process) -### change this to your email address --email = xuy5@email.chop.edu -# -# diff --git a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/processGTF.SAMs.py b/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/processGTF.SAMs.py deleted file mode 100644 index c808b35..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/processGTF.SAMs.py +++ /dev/null @@ -1,668 +0,0 @@ -# -## this program processes GTF file and SAM files to get both known and novel AS events -# - -### import necessary libraries -import re,os,sys,logging,time,datetime; -# -myVer= "2.5"; -# -### checking out the number of arguments -if (len(sys.argv)<4): - print('Not enough arguments!!'); - print ('It takes at least 3 arguments.'); - print ('Usage:\n\tpython ProgramName.py gtfFile outputPrefix SAMfiles [logFolder]'); - print ('Example\n\tpython ProgramName.py AceView.ncbi_37.gtf fromAceView sample1.sam,sample2.sam,... temp'); - sys.exit(); - -def listToString(x): - rVal = ''; - for a in x: - rVal += a+' '; - return rVal; - -def uniq(inlist): - # order preserving - uniques = [] - for item in inlist: - if item not in uniques: - uniques.append(item) - return uniques - -### setting up the logging format -logFolder = ''; -if len(sys.argv)>4: ## we have a log folder - logFolder = sys.argv[4].strip()+'/'; -logging.basicConfig(level=logging.DEBUG, - format='%(asctime)s %(message)s', - filename=logFolder+'log.process.GTF.SAMs.'+myVer+'.'+ str(datetime.datetime.now()), - filemode='w') - -##### Getting Start Time ###### -logging.debug('Start the program with [%s]\n', listToString(sys.argv)); -startTime = time.time(); -OUTDIR ="ASEvents"; -### -iFile = open(sys.argv[1]); ## input gtf file -oFile_3 = open(OUTDIR+'/'+sys.argv[2]+'.A3SS.txt', 'w'); ## alt-3 SS output file -oFile_5 = open(OUTDIR+'/'+sys.argv[2]+'.A5SS.txt', 'w'); ## alt-5 SS output file -oFile_ce = open(OUTDIR+'/'+sys.argv[2]+'.SE.txt', 'w'); ## skipped exon (cassette exon) output file -oFile_mxe = open(OUTDIR+'/'+sys.argv[2]+'.MXE.txt', 'w'); ## Mutually exclusive exon output file -oFile_afe = open(OUTDIR+'/'+sys.argv[2]+'.AFE.txt', 'w'); ## alt first exon output file -oFile_ale = open(OUTDIR+'/'+sys.argv[2]+'.ALE.txt', 'w'); ## alt last exon output file -oFile_ri = open(OUTDIR+'/'+sys.argv[2]+'.RI.txt', 'w'); ## retained intron output file -# -samFiles = sys.argv[3].split(','); ## coulbe be multiple sam files -# - - -### write out header -ceHeader = "ID\tGeneID\tgeneSymbol\tchr\tstrand\texonStart_0base\texonEnd\tupstreamES\tupstreamEE\tdownstreamES\tdownstreamEE"; -oFile_ce.write(ceHeader+'\n'); - -mxeHeader = "ID\tGeneID\tgeneSymbol\tchr\tstrand\t1stExonStart_0base\t1stExonEnd\t2ndExonStart_0base\t2ndExonEnd\tupstreamES\tupstreamEE\tdownstreamES\tdownstreamEE"; -oFile_mxe.write(mxeHeader+'\n'); -#oFile_mxe_filtered.write(mxeHeader+'\n'); - -altSSHeader = "ID\tGeneID\tgeneSymbol\tchr\tstrand\tlongExonStart_0base\tlongExonEnd\tshortES\tshortEE\tflankingES\tflankingEE"; -oFile_3.write(altSSHeader+'\n'); -oFile_5.write(altSSHeader+'\n'); - -altFLHeader = "ID\tGeneID\tgeneSymbol\tchr\tstrand\tdistalExonStart_0base\tdistalExonEnd\tproximalES\tproximalEE\tflankingES\tflankingEE" -oFile_afe.write(altFLHeader+'\n'); -oFile_ale.write(altFLHeader+'\n'); - -riHeader = "ID\tGeneID\tgeneSymbol\tchr\tstrand\triExonStart_0base\triExonEnd\tupstreamES\tupstreamEE\tdownstreamES\tdownstreamEE"; -oFile_ri.write(riHeader+'\n'); - -c=0; - -chunk=1000; -geneGroup={}; ## genes in a group - -genes = {}; -supple = {}; -cds={}; ## coding region - -for line in iFile: ## for each line - if ( line.startswith('##')): continue; ## skip the comment lines - ele = line.strip().split('\t'); - chr = ele[0]; - type = ele[2]; ## exon, intron, CDS, start_codon, stop_codon.. - sC = ele[3]; ## start coord, 1-base - eC = ele[4]; ## end coord, 1-base - group = range(int(sC)/chunk, int(eC)/chunk + 1); ## groups this line could belong to - group = list(set(group)); ## remove duplicate groups - strand = ele[6]; - desc = ele[8].split(';') - gID = desc[0].strip().split(' '); - txID = desc[1].strip().split(' '); - - if gID[0]!='gene_id' or txID[0] != 'transcript_id': ## wrong one.. - logging.debug("gID or txID is not correct: %s, %s" % (gID, txID)); - logging.debug("Incorrect description: %s" % ele); - continue; ## process next line - - for i in group: ## for each possible group - if i in geneGroup: ## this group already exist - geneGroup[i].append(gID[1]); ## duplicate geneIDs will get removed after the outer for loop - else: ## first time accesing this group - geneGroup[i] = [gID[1]]; - - if type=='exon': ## process exon - if gID[1] in genes: # already processed this gID - if txID[1] in genes[gID[1]]: ## this transcript is added already - genes[gID[1]][txID[1]].append([int(sC), int(eC)]); ## add exon to the existing Tx - else: ## first time processing this Tx - genes[gID[1]][txID[1]] = [[int(sC), int(eC)]]; ## add first exon - else: ## new gene ID - genes[gID[1]] = {}; - genes[gID[1]][txID[1]] = [[int(sC), int(eC)]]; ## add first exon - supple[gID[1]] = [gID[1], chr, strand]; ## geneID, chromosom and strand - if type=='CDS': ## coding region - if gID[1] in cds: # already processed this gID - if txID[1] in cds[gID[1]]: ## this transcript is added already - cds[gID[1]][txID[1]].append([int(sC), int(eC)]); ## add CDS to the existing Tx - else: ## first time processing this Tx - cds[gID[1]][txID[1]] = [[int(sC), int(eC)]]; ## add first CDS - else: ## new gene ID - cds[gID[1]] = {}; - cds[gID[1]][txID[1]] = [[int(sC), int(eC)]]; ## add first exon -logging.debug("Done populating genes and cds dictionaries"); -# -for gg in geneGroup: ## for all groups in geneGroup - geneGroup[gg] = list(set(geneGroup[gg])); -# -## stats -# -logging.debug("======== stats from genes ========="); -# -nGene=len(genes); ## number of genes in genes dict -nTx=0; ## number of transcripts -oneTx=0; ## number of one-tx genes -nExon = 0; ## number of exons -oneExon=0; ## number of one-exon transcripts -# -oneTxOneExon=0; ## number of one-tx genes with only one exon -# -for id in genes: ## for each gene - nTx += len(genes[id]); - if len(genes[id])==1: - oneTx += 1; ## one-transcript gene - for tx in genes[id]: ## for each tx - nExon += len(genes[id][tx]); - if len(genes[id][tx])==1: ## one exon tx - oneExon += 1; - if len(genes[id])==1: ## one tx gene - oneTxOneExon+=1; - -logging.debug("There are %d distinct gene ID in the gtf file" % nGene); -logging.debug("There are %d distinct transcript ID in the gtf file" % nTx); -logging.debug("There are %d one-transcript genes in the gtf file" % oneTx); -logging.debug("There are %d exons in the gtf file" % nExon); -logging.debug("There are %d one-exon transcripts in the gtf file" % oneExon); -logging.debug("There are %d one-transcript genes with only one exon in the transcript" % oneTxOneExon); -logging.debug("Average number of transcripts per gene is %f" % (float(nTx)/nGene)); -logging.debug("Average number of exons per transcript is %f" % (float(nExon)/nTx)); -logging.debug("Average number of exons per transcript excluding one-exon tx is %f" % (float(nExon-oneExon)/(nTx-oneExon))); -# -logging.debug("======== stats from cds ========="); -# -nGene=len(cds); ## number of genes in cds dict -nTx=0; ## number of transcripts -oneTx=0; ## number of one-tx genes -nExon = 0; ## number of exons -oneExon=0; ## number of one-exon transcripts -# -oneTxOneExon=0; ## number of one-tx genes with only one exon -# -for id in cds: ## for each gene - nTx += len(cds[id]); - if len(cds[id])==1: - oneTx += 1; ## one-transcript gene - for tx in cds[id]: ## for each tx - nExon += len(cds[id][tx]); - if len(cds[id][tx])==1: ## one exon tx - oneExon += 1; - if len(cds[id])==1: ## one tx gene - oneTxOneExon+=1; - -logging.debug("There are %d distinct gene ID in the gtf file" % nGene); -logging.debug("There are %d distinct transcript ID in the gtf file" % nTx); -logging.debug("There are %d one-transcript genes in the gtf file" % oneTx); -logging.debug("There are %d exons in the gtf file" % nExon); -logging.debug("There are %d one-exon transcripts in the gtf file" % oneExon); -logging.debug("There are %d one-transcript genes with only one cds in the transcript" % oneTxOneExon); -logging.debug("Average number of transcripts per gene is %f" % (float(nTx)/nGene)); -logging.debug("Average number of cds per transcript is %f" % (float(nExon)/nTx)); -logging.debug("Average number of cds per transcript excluding one-cds tx is %f" % (float(nExon-oneExon)/(nTx-oneExon))); -# -# -logging.debug("======== stats from geneGroup ========="); -# -tgi = 0;## total geneIDs -## -for gg in geneGroup: - tgi += len(geneGroup[gg]); -logging.debug("There are total of %d groups and %d genes in geneGroup" % (len(geneGroup), tgi)); -logging.debug("The average number of genes in each group is %f" % (float(tgi)/len(geneGroup))); -# -logging.debug("==========================================\n"); -# -# -### sort transcripts ### -# -for gID in genes: - for tID in genes[gID]: ## sort each transcript - if len(genes[gID][tID])==1: ## only one exon, skip it - continue; ## next transcript.. - genes[gID][tID] = sorted(genes[gID][tID]); ## sort each transcript -# -# -### now process SAM files to add novel transcripts constructed from novel junctions -### novel junction connects the existing exons (within a gene) but the junction is not defined in the gtf -# -samIndex=0; -for s1 in samFiles: ## for each samFiles - if len(s1.strip())<1: ## incorrect split. a user might accidently put comma at the end of input sam file list - continue; ### just skip this entry, probably the last one though - samIndex+=1; ## for the novel tx index - logging.debug("processing %s" % s1.strip()); - sFile = open(s1.strip()); ## open sam file - for line in sFile: ## process each line - if len(line.strip().split('\t'))<5 or line[0]=='#' or line[0]=='@' : ## blank line or comment - continue; ## go to next line - ele = line.strip().split('\t'); - chr = ele[2]; - if chr[0:3]!='chr': - chr = 'chr'+chr; - mc = int(ele[3]); ## 1 base, mapping coordinate - mString = ele[5]; ## mapping string, 50M or aMbNcM format - group = mc/chunk; ## group does not change, it's okay to check only one group for a junction read - if 'D' in mString or 'I' in mString or 'S' in mString or 'H' in mString or 'P' in mString or 'X' in mString or '=' in mString: ## skip - continue; ## go to next line - - ### check to see if the line is either exonic read or junction read - split_mString = mString.split('M'); - tor = 0; ## type of read, 0 nothing, 1 exonic read, 2 junction read - if len(split_mString)==2: - #tor = 1; ## exonic read ## - continue; ## go to next line - elif len(split_mString)==3: ###### junction read ########### - tor = 2; ## junction read - jS = mc+int(split_mString[0])-1; ## 1-base - jE = mc+ int(split_mString[0])+ int(split_mString[1].split('N')[0]) -1; ## 0-base - #key = chr+'_'+str(jS)+'_'+str(jE)+'_0'; - - ## get a group of genes then examine each gene in the group - if group not in geneGroup: ## this junction is not from annotated genes - continue; ## go to the next line - for cg in geneGroup[group]: ## for each candidate gene - ntx={}; ## novel transcript for the given candidate gene - for ctx in genes[cg]: ## for each transcript in the candidate gene - cexons = genes[cg][ctx]; ## candidate exons - uInd=-1; dInd=-1; ## upstream exon index and downstream exon index - - for ci in range(0, len(cexons)): ## examine each candidate exon - if cexons[ci][1]==jS: ## this exon has the same end - uInd=ci; - if cexons[ci][0]==(jE+1): ## this exon has the same start - dInd=ci; - - if uInd>-1 and dInd>-1: ## we have both exons here.. - if dInd-uInd == 1: ## known junction.. examine next gene - #if jS==18542228 and (jE+1)==18542603: - # print cexons; - # print ntx, uInd, dInd, samIndex; - # sys.exit(); - ntx={}; ## empty novel transcript dictionary then go to the next cg - break; ## break for ctx loop.. go and process next cg - elif dInd-uInd>1: ## novel junction.. make novel transcripts then add to ntx.. - key=str(cexons[uInd][0])+':'+str(cexons[uInd][1])+':'+str(cexons[dInd][0])+':'+str(cexons[dInd][1]); ## novel junction - nex = [cexons[uInd],cexons[dInd]]; ## novel exons - if uInd>0: ## not the first exon - key = str(cexons[uInd-1][0])+':'+str(cexons[uInd-1][1])+':'+key; ## prev exon + novel junction - nex = [cexons[uInd-1]]+nex; - if dInd=myExon[1]: ## fully contained - return True; - return False; -# -logging.debug("Process each gene from dictionary"); -# -numSkippingEvents=0; -numMXEvents=0; -numSSEvents=0; -num3=0; -num5=0; -numAFE=0; -numALE=0; -numRI=0; - -sEvents={}; -mxEvents={}; -ss3Events={}; -ss5Events={}; -mxEvents_filtered={}; -afeEvents={}; ## alternative first exon -aleEvents={}; ## alternative last exon -riEvents={}; ## retained intron - -dupSE=0; -dupMXE=0; -dupSS3=0; -dupSS5=0; -dupRI=0; - -filteredMXE=0; -# -for gID in genes: ## process each gene - supInfo = supple[gID]; ## supplementary info - if len(genes[gID])==1: ## only one transcript, alt SS event is imposible - continue; ## go to the next geneID - else: ## look for alt SS event - de={}; ## distinct exons - for tID in genes[gID]: ## sort each transcript, merge and get distinct exons - if len(genes[gID][tID])==1: ## only one exon, skip it - continue; ## next transcript.. - genes[gID][tID] = sorted(genes[gID][tID]); ## sort each transcript - for exon in genes[gID][tID]: - de[exon[0], exon[1]] = 1; ## it's okay to overwrite - - dc={}; ## distinct cds - if gID in cds: ## this gene has cds - for tID in cds[gID]: ## sort each transcript, merge and get distinct cds - if len(cds[gID][tID])==1: ## only one cds, skip it - continue; ## next transcript.. - cds[gID][tID] = sorted(cds[gID][tID]); ## sort each transcript - for exon in cds[gID][tID]: ## for each cds - dc[exon[0], exon[1]] = 1; ## it's okay to overwrite - - ## now we have sorted transcripts and distinct exons - ## examine each exon in de to see if the exon is involved in any types of AS events - - for ce in de: ## for each exon in distinct exon dictionary - uf=[]; ## upstream flanking exons - df=[]; ## downstream flanking exons - for tID in genes[gID]: ## examine each transcript to see if it contains the given exon - if [ce[0],ce[1]] in genes[gID][tID]: ## this exon is in the transcript - eInd = genes[gID][tID].index([ce[0],ce[1]]); - if (0ce[1]): ### this exon is the right one - goodMXE=True; -# for txs in genes[gID]: ### search through transcripts again to see if there is ce-mxe edge -# if [ce[0],ce[1]] in genes[gID][txs] and mxe in genes[gID][txs]: ## ce and mxe are not MXE -# goodMXE = False; -# filteredMXE+=1; -# fkey = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'+str(mxe[0]-1)+':'+str(mxe[1])+':'+str(f1[0]-1)+':'+str(f1[1])+':'+str(f2[0]-1)+':'+str(f2[1]); -# if fkey in mxEvents_filtered: ## duplicate, do not write out -# pass; -# else: -# mxEvents_filtered[fkey] = 1; -# oFile_mxe_filtered.write(str(filteredMXE)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\t'+str(mxe[0]-1)+'\t'+str(mxe[1])+'\t'+str(f1[0]-1)+'\t'+str(f1[1])+'\t'+str(f2[0]-1)+'\t'+str(f2[1])+'\n'); -# break; ### not MXE - if goodMXE: ### it's okay to write out - #key = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'+str(mxe[0]-1)+':'+str(mxe[1])+':'+str(f1[0]-1)+':'+str(f1[1])+':'+str(f2[0]-1)+':'+str(f2[1]); - key = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'+str(mxe[0]-1)+':'+str(mxe[1])+':'+str(f1[1])+':'+str(f2[0]-1); - if key in mxEvents: ## duplicate, - dupMXE += 1; - else: - numMXEvents += 1; - mxEvents[key] = 1; - oFile_mxe.write(str(numMXEvents)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\t'+str(mxe[0]-1)+'\t'+str(mxe[1])+'\t'+str(f1[0]-1)+'\t'+str(f1[1])+'\t'+str(f2[0]-1)+'\t'+str(f2[1])+'\n'); - - - #### alt-3 and alt-5 events ### - for i in range(0,len(uf)-1): ### going through the upstream flanking exons - e=uf[i]; - for j in range(i+1, len(uf)): - u=uf[j]; - if e[0]==u[0]: ## it is alt SS event, because uf is derived from SET - #key = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'+str(e[0]-1)+':'+str(max(e[1],u[1]))+':'+str(e[0]-1)+':'+str(min(e[1],u[1])); - key = supInfo[1]+':'+str(min(e[1],u[1]))+':'+str(max(e[1],u[1]))+':'+str(ce[0]-1); - if supInfo[2]=='+': ## positive strand. alt-5 event - if key in ss5Events: ## duplicate - dupSS5 += 1; - else: - ss5Events[key]=1; - num5 += 1; - oFile_5.write(str(num5)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(e[0]-1)+'\t'+str(max(e[1],u[1]))+'\t'+str(e[0]-1)+'\t'+str(min(e[1],u[1]))+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - else: ## neg strand. alt-3 event - if key in ss3Events: ## duplicate - dupSS3 += 1; - else: - ss3Events[key]=1; - num3 += 1; - oFile_3.write(str(num3)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(e[0]-1)+'\t'+str(max(e[1],u[1]))+'\t'+str(e[0]-1)+'\t'+str(min(e[1],u[1]))+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - - for i in range(0,len(df)-1): ### going through the downstream flanking exons - e=df[i]; - for j in range(i+1, len(df)): - d=df[j]; - if e[1]==d[1]: ## it is alt SS event, because uf is derived from SET - key = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'+str(min(e[0],d[0])-1)+':'+str(e[1])+':'+str(max(e[0],d[0])-1)+':'+str(e[1]); - key = supInfo[1]+':'+str(ce[1])+':'+str(min(e[0],d[0])-1)+':'+str(max(e[0],d[0])-1); - if supInfo[2]=='+': ## positive strand. alt-3 event - if key in ss3Events: ## duplicate - dupSS3 += 1; - else: - ss3Events[key]=1; - num3 += 1; - oFile_3.write(str(num3)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(min(e[0],d[0])-1)+'\t'+str(e[1])+'\t'+str(max(e[0],d[0])-1)+'\t'+str(e[1])+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - else: ## neg strand. alt-5 event - if key in ss5Events: ## duplicate - dupSS5 += 1; - else: - ss5Events[key]=1; - num5 += 1; - oFile_5.write(str(num5)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(min(e[0],d[0])-1)+'\t'+str(e[1])+'\t'+str(max(e[0],d[0])-1)+'\t'+str(e[1])+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - - - ### Alternative First Exon and Alternative Last Exon - - for tID in genes[gID]: ## examine each transcript to see if the given exon is in a given transcript (index should be 1 or len-2) - tLen = len(genes[gID][tID]); ## length of a transcript - if tLen<2: ## not enough exons, skip this - continue; ## process next transcript - - if [ce[0],ce[1]] == genes[gID][tID][1]: ## current exon is the 2nd exon in the tx - fEx = genes[gID][tID][0]; ## firstExon, find other tx with different fEX (non overlapping) - if fullyContainedInInternalExon(fEx, gID): ## fEx is fully contained.. process next transcript - continue; - for ctxID in genes[gID]: ## need to examine each tx, candidate transcript id - if len(genes[gID][ctxID])<2: ## not enough exons, skip this - continue; ## process next candidate transcript - if [ce[0],ce[1]] == genes[gID][ctxID][1]: ## the target exon is the 2nd exon in the ctx - cfEx = genes[gID][ctxID][0]; ## candidate first exon - if cfEx[0]>fEx[1] or fEx[0]>cfEx[1] : ### non-overlapping exon with smaller coord - - #### should not fully contained in an internal exon of other transcript - if fullyContainedInInternalExon(cfEx, gID): ## cfEx is fully contained.. process next candidate transcript - continue; - - if supInfo[2]=='+': ## positive strand. AFE, alt first exon event - key = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'; - key += str(min(fEx[0],cfEx[0])-1)+':'+str(min(fEx[1],cfEx[1]))+':'; - key += str(max(fEx[0],cfEx[0])-1)+':'+str(max(fEx[1],cfEx[1])); - if key in afeEvents: ## already have this one.. - pass; ## do nothing - else: ## new AFE - afeEvents[key] =1; - numAFE += 1; - oFile_afe.write(str(numAFE)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(min(fEx[0],cfEx[0])-1)+'\t'+str(min(fEx[1],cfEx[1]))+'\t'+str(max(fEx[0],cfEx[0])-1)+'\t'+str(max(fEx[1],cfEx[1]))+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - else: ## neg strand. ALE, alt last exon event - key = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'; - key += str(min(fEx[0],cfEx[0])-1)+':'+str(min(fEx[1],cfEx[1]))+':'; - key += str(max(fEx[0],cfEx[0])-1)+':'+str(max(fEx[1],cfEx[1])); - if key in aleEvents: ## already have this one.. - pass; ## do nothing - else: ## new ALE - aleEvents[key] =1; - numALE += 1; - oFile_ale.write(str(numALE)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(min(fEx[0],cfEx[0])-1)+'\t'+str(min(fEx[1],cfEx[1]))+'\t'+str(max(fEx[0],cfEx[0])-1)+'\t'+str(max(fEx[1],cfEx[1]))+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - - - if [ce[0],ce[1]] == genes[gID][tID][-2]: ## current exon is the 2nd to the last exon in the tx - fEx = genes[gID][tID][-1]; ## lastExon, find other tx with different fEX (non overlapping) - if fullyContainedInInternalExon(fEx, gID): ## fEx is fully contained.. process next transcript - continue; - for ctxID in genes[gID]: ## need to examine each tx, candidate transcript id - if len(genes[gID][ctxID])<2: ## not enough exons, skip this - continue; ## process next candidate transcript - if [ce[0],ce[1]] == genes[gID][ctxID][-2]: ## the target exon is the 2nd exon in the ctx - cfEx = genes[gID][ctxID][-1]; ## candidate last exon - if cfEx[0]>fEx[1] or fEx[0]>cfEx[1] : ### non-overlapping exon with smaller coord - - #### should not fully contained in an internal exon of other transcript - if fullyContainedInInternalExon(cfEx, gID): ## cfEx is fully contained.. process next candidate transcript - continue; - - if supInfo[2]=='-': ## negative strand. AFE, alt first exon event - key = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'; - key += str(min(fEx[0],cfEx[0])-1)+':'+str(min(fEx[1],cfEx[1]))+':'; - key += str(max(fEx[0],cfEx[0])-1)+':'+str(max(fEx[1],cfEx[1])); - if key in afeEvents: ## already have this one.. - pass; ## do nothing - else: ## new AFE - afeEvents[key] =1; - numAFE += 1; - oFile_afe.write(str(numAFE)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(max(fEx[0],cfEx[0])-1)+'\t'+str(max(fEx[1],cfEx[1]))+'\t'+str(min(fEx[0],cfEx[0])-1)+'\t'+str(min(fEx[1],cfEx[1]))+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - else: ## pos strand. ALE, alt last exon event - key = supInfo[1]+':'+str(ce[0]-1)+':'+str(ce[1])+':'; - key += str(min(fEx[0],cfEx[0])-1)+':'+str(min(fEx[1],cfEx[1]))+':'; - key += str(max(fEx[0],cfEx[0])-1)+':'+str(max(fEx[1],cfEx[1])); - if key in aleEvents: ## already have this one.. - pass; ## do nothing - else: ## new ALE - aleEvents[key] =1; - numALE += 1; - oFile_ale.write(str(numALE)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(max(fEx[0],cfEx[0])-1)+'\t'+str(max(fEx[1],cfEx[1]))+'\t'+str(min(fEx[0],cfEx[0])-1)+'\t'+str(min(fEx[1],cfEx[1]))+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - - - ### Retained Intron events - for i in range(0,len(uf)): ### going through the upstream flanking exons - f1 = uf[i]; ## first flanking exon - for tID in genes[gID]: ## examine each transcript - if [f1[0],ce[1]] in genes[gID][tID]: ## there is an exon starts from f1 ends at ce, it is retained intron - #key=supInfo[1]+':'+str(f1[0]-1)+':'+str(ce[1])+':'+str(f1[0]-1)+':'+str(f1[1])+':'+str(ce[0]-1)+':'+str(ce[1]); - key=supInfo[1]+':'+str(f1[1])+':'+str(ce[0]-1); - if key in riEvents: ## already have this skipping events - dupRI +=1; - continue; ## next transcript - else: ## new key, write it - riEvents[key]=1; - numRI += 1; - oFile_ri.write(str(numRI)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(f1[0]-1)+'\t'+str(ce[1])+'\t'+str(f1[0]-1)+'\t'+str(f1[1])+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\n'); - - for i in range(0,len(df)): ### going through the downstream flanking exons - f1 = df[i]; ## first flanking exon - for tID in genes[gID]: ## examine each transcript - if [ce[0],f1[1]] in genes[gID][tID]: ## there is an exon starts from ce ends at f1, it is retained intron - key=supInfo[1]+':'+str(ce[1])+':'+str(f1[0]-1); - if key in riEvents: ## already have this skipping events - dupRI +=1; - continue; ## next transcript - else: ## new key, write it - riEvents[key]=1; - numRI += 1; - oFile_ri.write(str(numRI)+'\t'+gID+'\t'+'\t'.join(supInfo)+'\t'+str(ce[0]-1)+'\t'+str(f1[1])+'\t'+str(ce[0]-1)+'\t'+str(ce[1])+'\t'+str(f1[0]-1)+'\t'+str(f1[1])+'\n'); - - ### end of else: end of merging genes -### end for gID in genes - -logging.debug("Done processing each gene from dictionary to compile AS events"); -# -logging.debug("Found %d exon skipping events, from dic %d" % (numSkippingEvents, len(sEvents))); -logging.debug("duplicate skipping events: %d" % dupSE); -# -logging.debug("Found %d exon MX events, from dic %d" % (numMXEvents, len(mxEvents))); -logging.debug("duplicate MXE events: %d" % dupMXE); -#logging.debug("Filtered MXE events: %d" % filteredMXE); -# -logging.debug("Found %d alt SS events" % (len(ss3Events)+len(ss5Events))); -logging.debug("There are %d alt 5 SS events and %d alt 3 SS events." % (num5,num3)); -logging.debug("duplicate alt-5 SS events: %d" % dupSS5); -logging.debug("duplicate alt-3 SS events: %d" % dupSS3); -# -# -logging.debug("Found %d AFE events, from dic %d" % (numAFE, len(afeEvents))); -#logging.debug("duplicate AFE events: %d" % dupAFE); -# -logging.debug("Found %d ALE events, from dic %d" % (numALE, len(aleEvents))); -#logging.debug("duplicate ALE events: %d" % dupALE); -# -logging.debug("Found %d RI events, from dic %d" % (numRI, len(riEvents))); -logging.debug("duplicate RI events: %d" % dupRI); -# - -iFile.close(); -oFile_3.close(); -oFile_5.close(); -oFile_ce.close(); -oFile_mxe.close(); -#oFile_mxe_filtered.close(); -oFile_afe.close(); -oFile_ale.close(); -oFile_ri.close(); - -############# -## calculate total running time -############# -logging.debug("Program ended"); -currentTime = time.time(); -runningTime = currentTime-startTime; ## in seconds -logging.debug("Program ran %.2d:%.2d:%.2d" % (runningTime/3600, (runningTime%3600)/60, runningTime%60)); - -sys.exit(0); diff --git a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/rMATS.processsUnique.singlesam.py b/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/rMATS.processsUnique.singlesam.py deleted file mode 100644 index 909fb90..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/rMATS.processsUnique.singlesam.py +++ /dev/null @@ -1,1082 +0,0 @@ -# -## It takes two samples for the comparison and detection of AS events -## Each sample contains a sam file -# -## MATS input files are generated for each AS events in two different versions -# - -### import necessary libraries -import re,os,sys,logging,time,datetime,commands; -import scipy,math; -from scipy import stats; - -### checking out the number of arguments -if (len(sys.argv)<2): - print('Not enough arguments!!'); - print ('It takes one argument'); - print ('Usage:\n\tpython ProgramName.py configFile'); - print ('Example\n\tpython ProgramName.py config.231OE'); - sys.exit(); - -def listToString(x): - rVal = ''; - for a in x: - rVal += a+' '; - return rVal; - - -### setting up the logging format -#logging.basicConfig(level=logging.DEBUG, -# format='%(asctime)s %(message)s', -# filename='log.processUniqSam.'+ str(datetime.datetime.now()), -# filemode='w') - -##### Getting Start Time ###### -#logging.debug('Start the program with [%s]\n', listToString(sys.argv)); -#startTime = time.time(); - -### setting file pointers -cFile = open(sys.argv[1]); ## config file -#oFile = open('commands.txt', 'a'); ## file that will contain list of commands excuted here - -### explain what commands.txt file is for -#oFile.write("#\n### List of commands excuted in the pipeline ###\n#\n"); - - -#### global variables ################ -#### default configuration values ##### -readLength=50; -junctionLength=84; -SE='SE'; -MXE='MXE'; -A5SS='A5SS'; -A3SS='A3SS'; -AFE='AFE'; -ALE='ALE'; -RI='RI'; -experiment = 'experiment'; -base_1 = 'base_1'; -dataType = 'paired'; ## either single or paired -samDir = '.'; -input_1='.'; -outDir = 'myOutput'; -email = 'yourID@your.domain'; -####################################### - -#logging.debug("======================= configuration ============================"); -#### assigning proper parameters -#### according to the configuration file -for line in cFile: ## for each line - if len(line.strip())>0 and line.strip()[0]!='#' : ### it is not the empty line or comments - ele=line.strip().split('='); - param = ele[0].replace(' ','')[1:]; - value = ele[1].replace(' ',''); - if param == 'SE': ## Skipped exon file - SE = value; -# logging.debug("SE is %s" % SE); - elif param == 'MXE': ## Mutually exclusive exon - MXE = value; -# logging.debug("MXE is %s" % MXE); - elif param == 'A5SS': ## Alternative 5 prime splice site - A5SS = value; -# logging.debug("A5SS is %s" % A5SS); - elif param == 'A3SS': ## Alternative 3 prime splice site - A3SS = value; -# logging.debug("A3SS is %s" % A3SS); - elif param == 'AFE': ## Alternative first exon - AFE = value; -# logging.debug("AFE is %s" % AFE); - elif param == 'ALE': ## Alternative last exon - ALE = value; -# logging.debug("ALE is %s" % ALE); - elif param == 'RI': ## Retained intron - RI = value; -# logging.debug("RI is %s" % RI); - elif param == 'experiment': ### experiment name. e.g., MB231OE - experiment = value; -# logging.debug("experiment or prefix is %s" % experiment); - elif param == 'base_1': ### base for sample_1. e.g., ESRP - base_1 = value; -# logging.debug("base for sample_1 is %s" % base_1); - elif param == 'base_2': ### base for sample_2. e.g., EV - base_2 = value; -# logging.debug("base for sample_2 is %s" % base_2); - elif param == 'dataType': ## setting data type here, single or paired - dataType = value; -# logging.debug("dataType is %s" % dataType); - elif param == 'samDir': ## sam file directory - samDir = value; - if len(samDir.strip())>0: ## we do have samDir - samDir = samDir.strip()+'/'; -# logging.debug("samDir is %s" % samDir); - elif param == 'outDir': ## out file directory - outDir = value; -# logging.debug("outDir is %s" % outDir); - elif param == 'input_1': ## sam file names for sample_1 - input_1 = value; -# logging.debug("input_1 is %s" % input_1); -# elif param == 'input_2': ## sam file names for sample_2 -# input_2 = value; -# logging.debug("input_2 is %s" % input_2); - elif param == 'email': ### alert email - email = value; -# logging.debug("email is %s" % email); - elif param == 'readLength': ### readLength - readLength = int(value); -# logging.debug("readLength is %s" % readLength); - elif param == 'junctionLength': ### junctionLength - junctionLength = int(value); -# logging.debug("junctionLength is %s" % junctionLength); - -# -commands.getstatusoutput('mkdir '+outDir); -# - -## setting up the logging format -logging.basicConfig(level=logging.DEBUG, - format='%(asctime)s %(message)s', - filename=outDir+'/'+'log.processUniqSam.'+ str(datetime.datetime.now()), - filemode='w') - -##### Getting Start Time ###### -logging.debug('Start the program with [%s]\n', listToString(sys.argv)); -startTime = time.time(); - -sample_1 = input_1.split(','); ## could be multiple sam files -#sample_2 = input_2.split(','); ## could be multiple sam files -# -numRep_1 = len(sample_1); -#numRep_2 = len(sample_2); -# -ejLength = junctionLength-readLength+1; ## effective junction length -# -logging.debug("Effective junction length is: %d" % ejLength); -# -logging.debug("There are %d replicates in sample_1: %s" % (numRep_1,base_1)); -#logging.debug("There are %d replicates in sample_2: %s" % (numRep_2,base_2)); -# -logging.debug("=================================================================="); -# -CT1,CT2,CT3=0,1,2; ### count type 1,2, or 3 -S1,S2=0,1; ## sample 1 or sample 2 -I,S=0,1; ## inclusion isoform or skipping form -# -# -######### more functions ############# -# - -def logline(): - logging.debug("=================================================================="); -## end of logline function - -def alertEmail(msg): - cmd = 'echo "'+msg+'" | mail -s "'+experiment+': processingSam alert" ' + email; - logging.debug("alert email: %s" % cmd); - #oFile.write('### sending alert email\n'+cmd+'\n#\n'); - #oFile.flush(); - commands.getstatusoutput(cmd); -### end of alertEmail function - -def infoEmail(msg): - cmd = 'echo "'+msg+'" | mail -s "'+experiment+': processingSam information" ' + email; - logging.debug("info email: %s" % cmd); - #oFile.write('### sending information email\n'+cmd+'\n#\n'); - #oFile.flush(); - commands.getstatusoutput(cmd); -### end of infoEmail function - -#Input: -#insertsize_inclusion: a numerical variable for the paired-end read inclusion form insert size -#insertsize_skipping: a numerical variable for the paired-end read skipping form insert size -#insertsize_mean: a numerical variable for the mean of the insert size -#insertsize_var: a numerical variable for the variance of the insert size -#Output: -#A 2-element vector for the [fraction of the inclusion form, fraction of the skipping form] -def PE_fraction(insertsize_inclusion, insertsize_skipping, insertsize_mean, insertsize_var): - p1=stats.norm.cdf(insertsize_inclusion+0.5,insertsize_mean,math.sqrt(insertsize_var)); - p1=p1-stats.norm.cdf(insertsize_inclusion-0.5,insertsize_mean,math.sqrt(insertsize_var)); - p2=stats.norm.cdf(insertsize_skipping+0.5,insertsize_mean,math.sqrt(insertsize_var)); - p2=p2-stats.norm.cdf(insertsize_skipping-0.5,insertsize_mean,math.sqrt(insertsize_var)); - return([p1/(p1+p2),p2/(p1+p2)]); - -def getInitialCounts(): ## getting initial counts for each AS event - rValue = [[[[],[]],[[],[]]],[[[],[]],[[],[]]],[[[],[]],[[],[]]]]; ## count type 1, 2, and 3 - for i in range(0,numRep_1): ## for sample 1 - rValue[CT1][S1][I].append(0); - rValue[CT1][S1][S].append(0); - rValue[CT2][S1][I].append(0); - rValue[CT2][S1][S].append(0); - rValue[CT3][S1][I].append(0); - rValue[CT3][S1][S].append(0); -# for i in range(0,numRep_2): ## for sample 2 -# rValue[CT1][S2][I].append(0); -# rValue[CT1][S2][S].append(0); -# rValue[CT2][S2][I].append(0); -# rValue[CT2][S2][S].append(0); -# rValue[CT3][S2][I].append(0); -# rValue[CT3][S2][S].append(0); - return rValue; -#### end of getInitialCounts() - -prefix = experiment; -# -### open AS event files.. -# -seFile = open(SE); ## skipped exon event file -mxeFile = open(MXE); ## mxe event file -a5ssFile = open(A5SS); ## a5ss event file -a3ssFile = open(A3SS); ## a3ss event file -#afeFile = open(AFE); ## afe event file -#aleFile = open(ALE); ## ale event file -riFile = open(RI); ## ri event file -# -### open output files here... -# -JC_seFile = open(outDir+'/JC.'+prefix+'.SE.MATS.input.txt', 'w'); -JC_mxeFile = open(outDir+'/JC.'+prefix+'.MXE.MATS.input.txt', 'w'); -JC_a5ssFile = open(outDir+'/JC.'+prefix+'.A5SS.MATS.input.txt', 'w'); -JC_a3ssFile = open(outDir+'/JC.'+prefix+'.A3SS.MATS.input.txt', 'w'); -#JC_afeFile = open(outDir+'/JC.'+prefix+'.AFE.MATS.input.txt', 'w'); -#JC_aleFile = open(outDir+'/JC.'+prefix+'.ALE.MATS.input.txt', 'w'); -JC_riFile = open(outDir+'/JC.'+prefix+'.RI.MATS.input.txt', 'w'); -# -JCEC_seFile = open(outDir+'/JCEC.'+prefix+'.SE.MATS.input.txt', 'w'); -JCEC_mxeFile = open(outDir+'/JCEC.'+prefix+'.MXE.MATS.input.txt', 'w'); -JCEC_a5ssFile = open(outDir+'/JCEC.'+prefix+'.A5SS.MATS.input.txt', 'w'); -JCEC_a3ssFile = open(outDir+'/JCEC.'+prefix+'.A3SS.MATS.input.txt', 'w'); -#JCEC_afeFile = open(outDir+'/JCEC.'+prefix+'.AFE.MATS.input.txt', 'w'); -#JCEC_aleFile = open(outDir+'/JCEC.'+prefix+'.ALE.MATS.input.txt', 'w'); -JCEC_riFile = open(outDir+'/JCEC.'+prefix+'.RI.MATS.input.txt', 'w'); -# -#JCECPE_seFile = open(outDir+'/JCECPE.'+prefix+'.SE.rMATS.input.txt', 'w'); -#JCECPE_mxeFile = open(outDir+'/JCECPE.'+prefix+'.MXE.rMATS.input.txt', 'w'); -#JCECPE_a5ssFile = open(outDir+'/JCECPE.'+prefix+'.A5SS.rMATS.input.txt', 'w'); -#JCECPE_a3ssFile = open(outDir+'/JCECPE.'+prefix+'.A3SS.rMATS.input.txt', 'w'); -#JCECPE_afeFile = open(outDir+'/JCECPE.'+prefix+'.AFE.rMATS.input.txt', 'w'); -#JCECPE_aleFile = open(outDir+'/JCECPE.'+prefix+'.ALE.rMATS.input.txt', 'w'); -#JCECPE_riFile = open(outDir+'/JCECPE.'+prefix+'.RI.rMATS.input.txt', 'w'); -# -logging.debug("populating AS events dictionary"); -# -chunk=1000; ## to speed up the sam file processing -# -se={};mxe={};a5ss={};a3ss={};afe={};ale={};ri={}; ## 7 dictionaries -e_se={};e_mxe={};e_a5ss={};e_a3ss={};e_afe={};e_ale={};e_ri={}; ## exons dictionaries -c_se={};c_mxe={};c_a5ss={};c_a3ss={};c_afe={};c_ale={};c_ri={}; ## count dictionaries -s_se={};s_mxe={};s_a5ss={};s_a3ss={};s_afe={};s_ale={};s_ri={}; ## supple dict. effective length of inclusion or skipping form for CT1,CT2,CT3 -# -logline(); -# -#### SE ###### -# -c=0; ## count -numSE=0; ## number of SE -numSEDup=0; ## duplicate SE id -line=seFile.readline(); ## skipping header -for line in seFile: ## process skipped exon events file - c+=1; - ele = line.strip().split('\t'); - id = int(ele[0]); - chr = ele[3]; - if chr[0:3]!='chr': ## X instead of chrX, add 'chr' - chr = 'chr'+chr; - strand = ele[4]; - tS = int(ele[5]); tE = int(ele[6]); ## target exon coord - uS = int(ele[7]); uE = int(ele[8]); ## upstream exon coord - dS = int(ele[9]); dE = int(ele[10]); ## downstream exon coord - - tLen=min(tE-tS,junctionLength/2); ## target exon length - uLen=min(uE-uS,junctionLength/2); ## upstream exon length - dLen=min(dE-dS,junctionLength/2); ## downstream exon length - - e_se[id] = [tS,tE,uS,uE,dS,dE]; - c_se[id] = getInitialCounts(); - I_0= max(0,tLen+uLen-readLength+1)+max(0,tLen+dLen-readLength+1); ## effective inclusion form length for JC - S_0= max(0,uLen+dLen-readLength+1); ## effective skipping form length for JC - I_1= max(tE-tS-readLength+1,0)+I_0; ## effective inclusion form length for JC+reads on target - S_1= S_0; ## effective skipping form length for JC+reads on target - I_2=0; S_2=0; ## effective length considering paired-end info.. not implemented yet - - #s_se[id] = [[2*ejLength,ejLength],[max(tE-tS-readLength+1,0)+2*ejLength,ejLength],[I_2,S_2]]; ## effective length for CT1,CT2,CT3 - s_se[id] = [[I_0,S_0],[I_1,S_1],[I_2,S_2]]; ## effective length for CT1,CT2,CT3 - - group = range(uS/chunk, uE/chunk+1) + range(tS/chunk, tE/chunk+1) + range(dS/chunk, dE/chunk+1); ## groups this event could belong - group = list(set(group)); ## remove duplicate groups - - if chr in se: ## already processed this chromosome - for i in group: ## for each possible group - if i in se[chr]: ## this group is already there - if id in se[chr][i]: ## not likely but this group already has the id - numSEDup+=1; - logging.debug("Duplicate SE ID: %d" % id); - else: ## new SE ID - se[chr][i][id] = [tS,tE,uS,uE,dS,dE]; ## skipping event with coords - numSE+=1; - else: ## new group to this chromosome - se[chr][i]={}; - se[chr][i][id] = [tS,tE,uS,uE,dS,dE]; ## skipping event with coords - numSE+=1; - else: ## first time accesing this chromosome - se[chr]={}; - for i in group: ## for each possible group - se[chr][i]={}; - se[chr][i][id] = [tS,tE,uS,uE,dS,dE]; ## skipping event with coords - numSE+=1; -logging.debug("Processed %d skipped exon events from input AS event file" % c); -logging.debug("Done populating skipped exon dictionary with %d items. %d have duplicate ids" % (numSE, numSEDup)); -logging.debug("There are %d se ids in count dictionary and %d se ids in supple dictionary" % (len(c_se),len(s_se))); -# -logline(); -# -#### MXE #### -# -c=0; ## count -numMXE=0; ## number of MXE -numMXEDup=0; ## duplicate MXE id -line=mxeFile.readline(); ## mxe header -for line in mxeFile: ## process mxe events file - c+=1; - ele = line.strip().split('\t'); - id = int(ele[0]); - chr = ele[3]; - if chr[0:3]!='chr': ## X instead of chrX, add 'chr' - chr = 'chr'+chr; - strand = ele[4]; ## '+' or '-' - tS = int(ele[5]); tE = int(ele[6]); ## target exon coord - sS = int(ele[7]); sE = int(ele[8]); ## second exon coord - if strand=='-': ## negative strand, switch target exon and second exon - tS = int(ele[7]); tE = int(ele[8]); ## target exon coord - sS = int(ele[5]); sE = int(ele[6]); ## second exon coord - uS = int(ele[9]); uE = int(ele[10]); ## upstream exon coord (samller coord) - dS = int(ele[11]); dE = int(ele[12]); ## downstream exon coord (bigger coord) - - tLen=min(tE-tS,junctionLength/2); ## target exon length - sLen=min(sE-sS,junctionLength/2); ## second exon length - uLen=min(uE-uS,junctionLength/2); ## upstream exon length - dLen=min(dE-dS,junctionLength/2); ## downstream exon length - - e_mxe[id] = [tS,tE,sS,sE,uS,uE,dS,dE]; ## target, second, up, down (This is different from the input file) - c_mxe[id] = getInitialCounts(); - I_0= max(0,tLen+uLen-readLength+1)+max(0,tLen+dLen-readLength+1); ## effective inclusion form length for JC - S_0= max(0,sLen+uLen-readLength+1)+max(0,sLen+dLen-readLength+1); ## effective skipping form length for JC - I_1= max(tE-tS-readLength+1,0)+I_0; ## effective inclusion form length for JC+reads on target - S_1= max(sE-sS-readLength+1,0)+S_0; ## effective skipping form length for JC+reads on target - I_2=0; S_2=0; ## effective length considering paired-end info.. not implemented yet - - s_mxe[id] = [[2*ejLength,2*ejLength],[max(tE-tS-readLength+1,0)+2*ejLength,max(sE-sS-readLength+1,0)+2*ejLength],[0,0]]; ## effective length for CT1,CT2,CT3 - s_mxe[id] = [[I_0,S_0],[I_1,S_1],[I_2,S_2]]; ## effective length for CT1,CT2,CT3 - - group = range(uS/chunk,uE/chunk+1)+range(tS/chunk,tE/chunk+1); - group = group + range(sS/chunk,sE/chunk+1)+range(dS/chunk,dE/chunk+1);## groups this event could belong - group = list(set(group)); ## remove duplicate groups - - if chr in mxe: ## already processed this chromosome - for i in group: ## for each possible group - if i in mxe[chr]: ## this group is already there - if id in mxe[chr][i]: ## not likely but this group already has the id - numMXEDup+=1; - logging.debug("Duplicate MXE ID: %d" % id); - else: ## new MXE ID - mxe[chr][i][id] = [tS,tE,sS,sE,uS,uE,dS,dE]; ## mxe event with coords - numMXE += 1; - else: ## new group to this chromosome - mxe[chr][i]={}; - mxe[chr][i][id] = [tS,tE,sS,sE,uS,uE,dS,dE]; ## mxe event with coords - numMXE += 1; - else: ## first time accesing this chromosome - mxe[chr]={}; - for i in group: ## for each possible group - mxe[chr][i]={}; - mxe[chr][i][id] = [tS,tE,sS,sE,uS,uE,dS,dE]; ## mxe event with coords - numMXE+=1; -logging.debug("Processed %d mxe events from input AS event file" % c); -logging.debug("Done populating mxe event dictionary with %d items. %d have duplicate ids" % (numMXE, numMXEDup)); -logging.debug("There are %d mxe ids in count dictionary and %d mxe ids in supple dictionary" % (len(c_mxe),len(s_mxe))); -# -logline(); -# -#### A5SS #### -# -c=0; ## count -numA5SS=0; ## number of A5SS -numA5SSDup=0; ## duplicate A5SS id -line=a5ssFile.readline(); ## skipping header -for line in a5ssFile: ## process a5ss events file - c+=1; - ele = line.strip().split('\t'); - id = int(ele[0]); - chr = ele[3]; - if chr[0:3]!='chr': ## X instead of chrX, add 'chr' - chr = 'chr'+chr; - strand = ele[4]; - lS = int(ele[5]); lE = int(ele[6]); ## long exon coord - sS = int(ele[7]); sE = int(ele[8]); ## short exon coord - fS = int(ele[9]); fE = int(ele[10]); ## flanking exon coord - - lLen=min(lE-lS,junctionLength/2); ## long exon length - sLen=min(sE-sS,junctionLength/2); ## short exon length - fLen=min(fE-fS,junctionLength/2); ## flanking exon length - aLen=min(lE-lS-(sE-sS),junctionLength/2); ## alternative SS region length - - e_a5ss[id] = [lS,lE,sS,sE,fS,fE]; - c_a5ss[id] = getInitialCounts(); - I_0= max(0,lLen+fLen-readLength+1)+max(0,sLen+aLen-readLength+1); ## effective inclusion form length for JC - S_0= max(0,sLen+fLen-readLength+1); ## effective skipping form length for JC - I_1= max(lE-lS-(sE-sS)-readLength+1,0)+I_0; ## effective inclusion form length for JC+reads on target - S_1= S_0; ## effective skipping form length for JC+reads on target - I_2=0; S_2=0; ## effective length considering paired-end info.. not implemented yet - - #s_a5ss[id] = [[ejLength,ejLength],[max(lE-lS-sE+sS,0)+ejLength,ejLength],[0,0]]; ## effective length for CT1,CT2,CT3 - s_a5ss[id] = [[I_0,S_0],[I_1,S_1],[I_2,S_2]]; ## effective length for CT1,CT2,CT3 - - group = range(lS/chunk, lE/chunk+1) + range(fS/chunk, fE/chunk+1); ## groups this event could belong - group = list(set(group)); ## remove duplicate groups - - if chr in a5ss: ## already processed this chromosome - for i in group: ## for each possible group - if i in a5ss[chr]: ## this group is already there - if id in a5ss[chr][i]: ## not likely but this group already has the id - numA5SSDup+=1; - logging.debug("Duplicate A5SS ID: %d" % id); - else: ## new A5SS ID - a5ss[chr][i][id] = [lS,lE,sS,sE,fS,fE]; ## a5ss event with coords - numA5SS+=1; - else: ## new group to this chromosome - a5ss[chr][i]={}; - a5ss[chr][i][id] = [lS,lE,sS,sE,fS,fE]; ## a5ss event with coords - numA5SS+=1; - else: ## first time accesing this chromosome - a5ss[chr]={}; - for i in group: ## for each possible group - a5ss[chr][i]={}; - a5ss[chr][i][id] = [lS,lE,sS,sE,fS,fE]; ## a5ss event with coords - numA5SS+=1; -logging.debug("Processed %d a5ss events from input AS event file" % c); -logging.debug("Done populating a5ss dictionary with %d items. %d have duplicate ids" % (numA5SS, numA5SSDup)); -logging.debug("There are %d a5ss ids in count dictionary and %d a5ss ids in supple dictionary" % (len(c_a5ss),len(s_a5ss))); -# -logline(); -# -#### A3SS #### -# -c=0; ## count -numA3SS=0; ## number of A3SS -numA3SSDup=0; ## duplicate A3SS id -line=a3ssFile.readline(); ## skipping header -for line in a3ssFile: ## process a3ss events file - c+=1; - ele = line.strip().split('\t'); - id = int(ele[0]); - chr = ele[3]; - if chr[0:3]!='chr': ## X instead of chrX, add 'chr' - chr = 'chr'+chr; - strand = ele[4]; - lS = int(ele[5]); lE = int(ele[6]); ## long exon coord - sS = int(ele[7]); sE = int(ele[8]); ## short exon coord - fS = int(ele[9]); fE = int(ele[10]); ## flanking exon coord - - lLen=min(lE-lS,junctionLength/2); ## long exon length - sLen=min(sE-sS,junctionLength/2); ## short exon length - fLen=min(fE-fS,junctionLength/2); ## flanking exon length - aLen=min(lE-lS-(sE-sS),junctionLength/2); ## alternative SS region length - - e_a3ss[id] = [lS,lE,sS,sE,fS,fE]; - c_a3ss[id] = getInitialCounts(); - I_0= max(0,lLen+fLen-readLength+1)+max(0,sLen+aLen-readLength+1); ## effective inclusion form length for JC - S_0= max(0,sLen+fLen-readLength+1); ## effective skipping form length for JC - I_1= max(lE-lS-(sE-sS)-readLength+1,0)+I_0; ## effective inclusion form length for JC+reads on target - S_1= S_0; ## effective skipping form length for JC+reads on target - I_2=0; S_2=0; ## effective length considering paired-end info.. not implemented yet - - #s_a3ss[id] = [[ejLength,ejLength],[max(lE-lS-sE+sS,0)+ejLength,ejLength],[0,0]]; ## effective length for CT1,CT2,CT3 - s_a3ss[id] = [[I_0,S_0],[I_1,S_1],[I_2,S_2]]; ## effective length for CT1,CT2,CT3 - - group = range(lS/chunk, lE/chunk+1) + range(fS/chunk, fE/chunk+1); ## groups this event could belong - group = list(set(group)); ## remove duplicate groups - - if chr in a3ss: ## already processed this chromosome - for i in group: ## for each possible group - if i in a3ss[chr]: ## this group is already there - if id in a3ss[chr][i]: ## not likely but this group already has the id - numA3SSDup+=1; - logging.debug("Duplicate A3SS ID: %d" % id); - else: ## new A3SS ID - a3ss[chr][i][id] = [lS,lE,sS,sE,fS,fE]; ## a3ss event with coords - numA3SS+=1; - else: ## new group to this chromosome - a3ss[chr][i]={}; - a3ss[chr][i][id] = [lS,lE,sS,sE,fS,fE]; ## a3ss event with coords - numA3SS+=1; - else: ## first time accesing this chromosome - a3ss[chr]={}; - for i in group: ## for each possible group - a3ss[chr][i]={}; - a3ss[chr][i][id] = [lS,lE,sS,sE,fS,fE]; ## a3ss event with coords - numA3SS+=1; -logging.debug("Processed %d a3ss events from input AS event file" % c); -logging.debug("Done populating a3ss dictionary with %d items. %d have duplicate ids" % (numA3SS, numA3SSDup)); -logging.debug("There are %d a3ss ids in count dictionary and %d a3ss ids in supple dictionary" % (len(c_a3ss),len(s_a3ss))); -# -logline(); -# -#### AFE #### -# -#c=0; ## count -#numAFE=0; ## number of AFE -#numAFEDup=0; ## duplicate AFE id -#line=afeFile.readline(); ## skipping header -#for line in afeFile: ## process afe events file -# c+=1; -# ele = line.strip().split('\t'); -# id = int(ele[0]); -# chr = ele[3]; -# if chr[0:3]!='chr': ## X instead of chrX, add 'chr' -# chr = 'chr'+chr; -# strand = ele[4]; -# dS = int(ele[5]); dE = int(ele[6]); ## distal exon coord -# pS = int(ele[7]); pE = int(ele[8]); ## proximal exon coord -# fS = int(ele[9]); fE = int(ele[10]); ## flanking exon coord -# -# dLen=min(dE-dS,junctionLength/2); ## distal exon length -# pLen=min(pE-pS,junctionLength/2); ## proximal exon length -# fLen=min(fE-fS,junctionLength/2); ## flanking exon length -# -# e_afe[id] = [dS,dE,pS,pE,fS,fE]; ## afe event with coord -# c_afe[id] = getInitialCounts(); -# I_0= max(0,dLen+fLen-readLength+1); ## effective inclusion form length for JC -# S_0= max(0,pLen+fLen-readLength+1); ## effective skipping form length for JC -# I_1= max(dE-dS-readLength+1,0)+I_0; ## effective inclusion form length for JC+reads on target -# S_1= max(pE-pS-readLength+1,0)+S_0; ## effective skipping form length for JC+reads on target -# I_2=0; S_2=0; ## effective length considering paired-end info.. not implemented yet -# -# #s_afe[id] = [[ejLength,ejLength],[max(dE-dS-readLength+1,0)+ejLength,max(pE-pS-readLength+1,0)+ejLength],[0,0]]; ## effective length for CT1,CT2,CT3 -# s_afe[id] = [[I_0,S_0],[I_1,S_1],[I_2,S_2]]; ## effective length for CT1,CT2,CT3 -# -# group = range(dS/chunk, dE/chunk+1) + range(pS/chunk, pE/chunk+1) + range(fS/chunk, fE/chunk+1); ## groups this event could belong -# group = list(set(group)); ## remove duplicate groups -# -# if chr in afe: ## already processed this chromosome -# for i in group: ## for each possible group -# if i in afe[chr]: ## this group is already there -# if id in afe[chr][i]: ## not likely but this group already has the id -# numAFEDup+=1; -# logging.debug("Duplicate AFE ID: %d" % id); -# else: ## new AFE ID -# afe[chr][i][id] = [dS,dE,pS,pE,fS,fE]; ## afe event with coord -# numAFE+=1; -# else: ## new group to this chromosome -# afe[chr][i]={}; -# afe[chr][i][id] = [dS,dE,pS,pE,fS,fE]; ## afe event with coord -# numAFE+=1; -# else: ## first time accesing this chromosome -# afe[chr]={}; -# for i in group: ## for each possible group -# afe[chr][i]={}; -# afe[chr][i][id] = [dS,dE,pS,pE,fS,fE]; ## afe event with coord -# numAFE+=1; -#logging.debug("Processed %d afe events from input AS event file" % c); -#logging.debug("Done populating afe dictionary with %d items. %d have duplicate ids" % (numAFE, numAFEDup)); -#logging.debug("There are %d afe ids in count dictionary and %d afe ids in supple dictionary" % (len(c_afe),len(s_afe))); -## -#logline(); -## -##### ALE #### -## -#c=0; ## count -#numALE=0; ## number of ALE -#numALEDup=0; ## duplicate ALE id -#line=aleFile.readline(); ## skipping header -#for line in aleFile: ## process ale events file -# c+=1; -# ele = line.strip().split('\t'); -# id = int(ele[0]); -# chr = ele[3]; -# if chr[0:3]!='chr': ## X instead of chrX, add 'chr' -# chr = 'chr'+chr; -# strand = ele[4]; -# dS = int(ele[5]); dE = int(ele[6]); ## distal exon coord -# pS = int(ele[7]); pE = int(ele[8]); ## proximal exon coord -# fS = int(ele[9]); fE = int(ele[10]); ## flanking exon coord -# -# dLen=min(dE-dS,junctionLength/2); ## distal exon length -# pLen=min(pE-pS,junctionLength/2); ## proximal exon length -# fLen=min(fE-fS,junctionLength/2); ## flanking exon length -# -# e_ale[id] = [dS,dE,pS,pE,fS,fE]; ## ale event with coord -# c_ale[id] = getInitialCounts(); -# I_0= max(0,pLen+fLen-readLength+1); ## effective inclusion form length for JC -# S_0= max(0,dLen+fLen-readLength+1); ## effective skipping form length for JC -# I_1= max(pE-pS-readLength+1,0)+I_0; ## effective inclusion form length for JC+reads on target -# S_1= max(dE-dS-readLength+1,0)+S_0; ## effective skipping form length for JC+reads on target -# I_2=0; S_2=0; ## effective length considering paired-end info.. not implemented yet -# -# #s_ale[id] = [[ejLength,ejLength],[max(pE-pS-readLength+1,0)+ejLength,max(dE-dS-readLength+1,0)+ejLength],[0,0]]; ## effective length for CT1,CT2,CT3 -# s_ale[id] = [[I_0,S_0],[I_1,S_1],[I_2,S_2]]; ## effective length for CT1,CT2,CT3 -# -# group = range(dS/chunk, dE/chunk+1) + range(pS/chunk, pE/chunk+1) + range(fS/chunk, fE/chunk+1); ## groups this event could belong -# group = list(set(group)); ## remove duplicate groups -# -# if chr in ale: ## already processed this chromosome -# for i in group: ## for each possible group -# if i in ale[chr]: ## this group is already there -# if id in ale[chr][i]: ## not likely but this group already has the id -# numALEDup+=1; -# logging.debug("Duplicate ALE ID: %d" % id); -# else: ## new ALE ID -# ale[chr][i][id] = [dS,dE,pS,pE,fS,fE]; ## ale event with coord -# numALE+=1; -# else: ## new group to this chromosome -# ale[chr][i]={}; -# ale[chr][i][id] = [dS,dE,pS,pE,fS,fE]; ## ale event with coord -# numALE+=1; -# else: ## first time accesing this chromosome -# ale[chr]={}; -# for i in group: ## for each possible group -# ale[chr][i]={}; -# ale[chr][i][id] = [dS,dE,pS,pE,fS,fE]; ## ale event with coord -# numALE+=1; -#logging.debug("Processed %d ale events from input AS event file" % c); -#logging.debug("Done populating ale dictionary with %d items. %d have duplicate ids" % (numALE, numALEDup)); -#logging.debug("There are %d ale ids in count dictionary and %d ale ids in supple dictionary" % (len(c_ale),len(s_ale))); -## -#logline(); -# -#### RI #### -# -c=0; ## count -numRI=0; ## number of RI -numRIDup=0; ## duplicate RI id -line=riFile.readline(); ## skipping header -for line in riFile: ## process ri events file - c+=1; - ele = line.strip().split('\t'); - id = int(ele[0]); - chr = ele[3]; - if chr[0:3]!='chr': ## X instead of chrX, add 'chr' - chr = 'chr'+chr; - strand = ele[4]; - rS = int(ele[5]); rE = int(ele[6]); ## ri exon coord (including up- and down-stream exons) - uS = int(ele[7]); uE = int(ele[8]); ## upstream exon coord - dS = int(ele[9]); dE = int(ele[10]); ## downstream exon coord - - rLen=min(rE-rS,junctionLength/2); ## ri exon length - uLen=min(uE-uS,junctionLength/2); ## upstream exon length - dLen=min(dE-dS,junctionLength/2); ## downstream exon length - riLen=min(rE-rS-(uE-uS)-(dE-dS),junctionLength/2); ## retained exon length - - e_ri[id] = [rS,rE,uS,uE,dS,dE]; ## ri event with coord - c_ri[id] = getInitialCounts(); - I_0= max(uLen+riLen-readLength+1,0)+max(dLen+riLen-readLength+1,0); ## effective inclusion form length for JC - S_0= max(uLen+dLen-readLength+1,0); ## effective skipping form length for JC - I_1= max(rE-rS-(uE-uS)-(dE-dS)-readLength+1,0)+I_0; ## effective inclusion form length for JC+reads on target - S_1= S_0; ## effective skipping form length for JC+reads on target - I_2=0; S_2=0; ## effective length considering paired-end info.. not implemented yet - - #s_ri[id] = [[ejLength,ejLength],[dS-uE+readLength-1,ejLength],[0,0]]; ## effective length for CT1,CT2,CT3 - s_ri[id] = [[I_0,S_0],[I_1,S_1],[I_2,S_2]]; ## effective length for CT1,CT2,CT3 - - group = range(rS/chunk, rE/chunk+1); ## groups this event could belong - group = list(set(group)); ## remove duplicate groups - - if chr in ri: ## already processed this chromosome - for i in group: ## for each possible group - if i in ri[chr]: ## this group is already there - if id in ri[chr][i]: ## not likely but this group already has the id - numRIDup+=1; - logging.debug("Duplicate RI ID: %d" % id); - else: ## new RI ID - ri[chr][i][id] = [rS,rE,uS,uE,dS,dE]; ## ri event with coord - numRI+=1; - else: ## new group to this chromosome - ri[chr][i]={}; - ri[chr][i][id] = [rS,rE,uS,uE,dS,dE]; ## ri event with coord - numRI+=1; - else: ## first time accesing this chromosome - ri[chr]={}; - for i in group: ## for each possible group - ri[chr][i]={}; - ri[chr][i][id] = [rS,rE,uS,uE,dS,dE]; ## ri event with coord - numRI+=1; -logging.debug("Processed %d ri events from input AS event file" % c); -logging.debug("Done populating ri dictionary with %d items. %d have duplicate ids" % (numRI, numRIDup)); -logging.debug("There are %d ri ids in count dictionary and %d ri ids in supple dictionary" % (len(c_ri),len(s_ri))); -# -logline(); -# -## sys.exit(0); -# -# -def processSample(sample, sInd): ## call it with processSample(sample_1, S1) something like this - - ### process the given sample ### - for s1 in sample: ## for each sam file - rep = sample.index(s1); - if len(s1.strip())<1: ## incorrect split. a user might accidently put comma at the end of input sam file list - continue; ### just skip this entry, probably the last one though - sFile = open(samDir+s1.strip()); ## open sam file - e1 = {}; ## edge count here - for line in sFile: ## process each line - if len(line.strip().split('\t'))<5 or line[0]=='#' or line[0]=='@' : ## blank line or comment - continue; ## go to next line - ele = line.strip().split('\t'); - chr = ele[2]; - if chr[0:3]!='chr': - chr = 'chr'+chr; - mc = int(ele[3]); ## 1 base, mapping coordinate - mString = ele[5]; ## mapping string, 50M or aMbNcM format - group = mc/chunk; ## group does not change, it's okay to check only one group for a junction read - if 'D' in mString or 'I' in mString or 'S' in mString or 'H' in mString or 'P' in mString or 'X' in mString or '=' in mString: ## skip - continue; ## go to next line - - ### check to see if the line is either exonic read or junction read - split_mString = mString.split('M'); - tor = 0; ## type of read, 0 nothing, 1 exonic read, 2 junction read - if len(split_mString)==2: - tor = 1; ############ exonic read ###### - rL = int(split_mString[0]); ## read length specified in this mapping string - mec = mc+rL-1; ## mapping end coord - - ## SE ### - if chr in se: ## this chromosome has se event(s) - if group in se[chr]: ## this group has skipped exon event(s) - for c in se[chr][group]: ## for each skipped exon event in this group - if (mc>se[chr][group][c][0] and mec<=se[chr][group][c][1]): ## read on the target - c_se[c][CT2][sInd][I][rep]+=1; - ### end of SE ### - - ### MXE #### - if chr in mxe: ## this chromosome has mxe event(s) - if group in mxe[chr]: ## this group has mxe event(s) - for c in mxe[chr][group]: ## for each mxe event in this group - if (mc>mxe[chr][group][c][0] and mec<=mxe[chr][group][c][1]): ## read on the target exon - c_mxe[c][CT2][sInd][I][rep]+=1; - elif (mc>mxe[chr][group][c][2] and mec<=mxe[chr][group][c][3]): ## read on the second exon - c_mxe[c][CT2][sInd][S][rep]+=1; - ## end of MXE ### - - ## A5SS ## - if chr in a5ss: ## this chromosome has a5ss event(s) - if group in a5ss[chr]: ## this group has a5ss event(s) - for c in a5ss[chr][group]: ## for each a5ss event in this group - - if a5ss[chr][group][c][4]>a5ss[chr][group][c][1]: ## positive strand - # if (mc>a5ss[chr][group][c][0] and mc<=(a5ss[chr][group][c][3]-(rL-junctionLength/2)+1) and mec<=a5ss[chr][group][c][1] and mec>=(a5ss[chr][group][c][3]+(rL-junctionLength/2))): ## multi-exon read supporting target - # c_a5ss[c][CT1][sInd][I][rep]+=1; - # c_a5ss[c][CT2][sInd][I][rep]+=1; - if (mc>a5ss[chr][group][c][3] and mec<=a5ss[chr][group][c][1]): ## exon read supporting target - c_a5ss[c][CT2][sInd][I][rep]+=1; - - else: ## negative strand - # if (mc>a5ss[chr][group][c][0] and mc<=(a5ss[chr][group][c][2]-(rL-junctionLength/2)+1) and mec<=a5ss[chr][group][c][1] and mec>=(a5ss[chr][group][c][3]+(rL-junctionLength/2))): ## multi-exon read supporting target - # c_a5ss[c][CT1][sInd][I][rep]+=1; - # c_a5ss[c][CT2][sInd][I][rep]+=1; - if (mc>a5ss[chr][group][c][0] and mec<=a5ss[chr][group][c][2]): ## exon read supporting target - c_a5ss[c][CT2][sInd][I][rep]+=1; - - ## end of A5SS ### - - ## A3SS ## - if chr in a3ss: ## this chromosome has a3ss event(s) - if group in a3ss[chr]: ## this group has a3ss event(s) - for c in a3ss[chr][group]: ## for each a3ss event in this group - - if a3ss[chr][group][c][4]>a3ss[chr][group][c][1]: ## negative strand - #if (mc>a3ss[chr][group][c][0] and mc<=(a3ss[chr][group][c][3]-(rL-junctionLength/2)+1) and mec<=a3ss[chr][group][c][1] and mec>=(a3ss[chr][group][c][3]+(rL-junctionLength/2))): ## multi-exon read supporting target - # c_a3ss[c][CT1][sInd][I][rep]+=1; - # c_a3ss[c][CT2][sInd][I][rep]+=1; - if (mc>a3ss[chr][group][c][3] and mec<=a3ss[chr][group][c][1]): ## exon read supporting target - c_a3ss[c][CT2][sInd][I][rep]+=1; - - else: ## positive strand - #if (mc>a3ss[chr][group][c][0] and mc<=(a3ss[chr][group][c][2]-(rL-junctionLength/2)+1) and mec<=a3ss[chr][group][c][1] and mec>=(a3ss[chr][group][c][3]+(rL-junctionLength/2))): ## multi-exon read supporting target - # c_a3ss[c][CT1][sInd][I][rep]+=1; - # c_a3ss[c][CT2][sInd][I][rep]+=1; - if (mc>a3ss[chr][group][c][0] and mec<=a3ss[chr][group][c][2]): ## exon read supporting target - c_a3ss[c][CT2][sInd][I][rep]+=1; - - ## end of A3SS ### - -# ## AFE ## -# if chr in afe: ## this chromosome has afe event(s) -# if group in afe[chr]: ## this group has afe event(s) -# for c in afe[chr][group]: ## for each afe event in this group -# if afe[chr][group][c][4]>afe[chr][group][c][1]: ## positive strand -# if (mc>afe[chr][group][c][0] and mec<=afe[chr][group][c][1]): ## genome read supporting inclusion (first exon) -# c_afe[c][CT2][sInd][I][rep]+=1; -# elif (mc>afe[chr][group][c][2] and mec<=afe[chr][group][c][3]): ## genome read supporting skipping (second exon) -# c_afe[c][CT2][sInd][S][rep]+=1; -# else: ## negative strand (no difference for genome reads) -# if (mc>afe[chr][group][c][0] and mec<=afe[chr][group][c][1]): ## genome read supporting inclusion (first exon) -# c_afe[c][CT2][sInd][I][rep]+=1; -# elif (mc>afe[chr][group][c][2] and mec<=afe[chr][group][c][3]): ## genome read supporting skipping (second exon) -# c_afe[c][CT2][sInd][S][rep]+=1; -# ## end of AFE ### -# -# ## ALE ## -# if chr in ale: ## this chromosome has ale event(s) -# if group in ale[chr]: ## this group has ale event(s) -# for c in ale[chr][group]: ## for each ale event in this group -# if ale[chr][group][c][4]>ale[chr][group][c][1]: ## negative strand -# if (mc>ale[chr][group][c][2] and mec<=ale[chr][group][c][3]): ## genome read supporting inclusion (first exon) -# c_ale[c][CT2][sInd][I][rep]+=1; -# elif (mc>ale[chr][group][c][0] and mec<=ale[chr][group][c][1]): ## genome read supporting skipping (second exon) -# c_ale[c][CT2][sInd][S][rep]+=1; -# else: ## positive strand (no difference for genome reads) -# if (mc>ale[chr][group][c][2] and mec<=ale[chr][group][c][3]): ## genome read supporting inclusion (first exon) -# c_ale[c][CT2][sInd][I][rep]+=1; -# elif (mc>ale[chr][group][c][0] and mec<=ale[chr][group][c][1]): ## genome read supporting skipping (second exon) -# c_ale[c][CT2][sInd][S][rep]+=1; -# ## end of ALE ### - - ## RI ## - if chr in ri: ## this chromosome has ale event(s) - if group in ri[chr]: ## this group has ri event(s) - for c in ri[chr][group]: ## for each ri event in this group, strand does not matter for ri events - #if (mc>ri[chr][group][c][2] and mc<=ri[chr][group][c][4] and mec>ri[chr][group][c][3] and mec<=ri[chr][group][c][5]): ## genome read supporting retained area - if (mc>ri[chr][group][c][0] and mc<=(ri[chr][group][c][3]-(rL-junctionLength/2)+1) and mec<=ri[chr][group][c][4] and mec>=(ri[chr][group][c][3]+(rL-junctionLength/2))) or (mc>ri[chr][group][c][3] and mc<=(ri[chr][group][c][4]-(rL-junctionLength/2)+1) and mec<=ri[chr][group][c][5] and mec>=(ri[chr][group][c][4]+(rL-junctionLength/2))): ## multi-exon read supporting target - c_ri[c][CT1][sInd][I][rep]+=1; - c_ri[c][CT2][sInd][I][rep]+=1; - if (mc>ri[chr][group][c][3] and mec<=ri[chr][group][c][4]): ## exon read supporting target - c_ri[c][CT2][sInd][I][rep]+=1; - ## end of RI ### - - - elif len(split_mString)==3: ###### junction read ########### - tor = 2; ## junction read - jS = mc+int(split_mString[0])-1; ## 1-base - jE = mc+ int(split_mString[0])+ int(split_mString[1].split('N')[0]) -1; ## 0-base - key = chr+'_'+str(jS)+'_'+str(jE)+'_0'; - if key in e1: ## exist! - e1[key] = e1[key]+1; - else: ## new junction - e1[key] = 1; - - ## SE ### - if chr in se: ## this chromosome has se event(s) - if group in se[chr]: ## this group has skipped exon event(s) - for c in se[chr][group]: ## for each skipped exon event in this group, examine if the given junction is part of it - if (jS==se[chr][group][c][3] and jE==se[chr][group][c][0]) or (jS==se[chr][group][c][1] and jE==se[chr][group][c][4]): ## IJC - c_se[c][CT1][sInd][I][rep]+=1; - c_se[c][CT2][sInd][I][rep]+=1; - elif jS==se[chr][group][c][3] and jE==se[chr][group][c][4]: ## SJC - c_se[c][CT1][sInd][S][rep]+=1; - c_se[c][CT2][sInd][S][rep]+=1; - ### end of SE ### - - ## MXE ### - if chr in mxe: ## this chromosome has mxe event(s) - if group in mxe[chr]: ## this group has mxe event(s) - for c in mxe[chr][group]: ## for each mxe event in this group, examine if the given junction is part of it - if (jS==mxe[chr][group][c][5] and jE==mxe[chr][group][c][0]) or (jS==mxe[chr][group][c][1] and jE==mxe[chr][group][c][6]): ## IJC - c_mxe[c][CT1][sInd][I][rep]+=1; - c_mxe[c][CT2][sInd][I][rep]+=1; - elif (jS==mxe[chr][group][c][5] and jE==mxe[chr][group][c][2]) or (jS==mxe[chr][group][c][3] and jE==mxe[chr][group][c][6]): ## SJC - c_mxe[c][CT1][sInd][S][rep]+=1; - c_mxe[c][CT2][sInd][S][rep]+=1; - ### end of MXE ### - - ## A5SS ### - if chr in a5ss: ## this chromosome has a5ss event(s) - if group in a5ss[chr]: ## this group has a5ss event(s) - for c in a5ss[chr][group]: ## for each a5ss event in this group, examine if the given junction is part of it - if a5ss[chr][group][c][4]>a5ss[chr][group][c][1]: ## positive strand - if jS==a5ss[chr][group][c][1] and jE==a5ss[chr][group][c][4]: ## IJC - c_a5ss[c][CT1][sInd][I][rep]+=1; - c_a5ss[c][CT2][sInd][I][rep]+=1; - elif jS==a5ss[chr][group][c][3] and jE==a5ss[chr][group][c][4]: ## SJC - c_a5ss[c][CT1][sInd][S][rep]+=1; - c_a5ss[c][CT2][sInd][S][rep]+=1; - else: ## negative strand - if jS==a5ss[chr][group][c][5] and jE==a5ss[chr][group][c][0]: ## IJC - c_a5ss[c][CT1][sInd][I][rep]+=1; - c_a5ss[c][CT2][sInd][I][rep]+=1; - elif jS==a5ss[chr][group][c][5] and jE==a5ss[chr][group][c][2]: ## SJC - c_a5ss[c][CT1][sInd][S][rep]+=1; - c_a5ss[c][CT2][sInd][S][rep]+=1; - ### end of A5SS ### - - ## A3SS ### - if chr in a3ss: ## this chromosome has a3ss event(s) - if group in a3ss[chr]: ## this group has a3ss event(s) - for c in a3ss[chr][group]: ## for each a3ss event in this group, examine if the given junction is part of it - if a3ss[chr][group][c][4]>a3ss[chr][group][c][1]: ## negative strand - if jS==a3ss[chr][group][c][1] and jE==a3ss[chr][group][c][4]: ## IJC - c_a3ss[c][CT1][sInd][I][rep]+=1; - c_a3ss[c][CT2][sInd][I][rep]+=1; - elif jS==a3ss[chr][group][c][3] and jE==a3ss[chr][group][c][4]: ## SJC - c_a3ss[c][CT1][sInd][S][rep]+=1; - c_a3ss[c][CT2][sInd][S][rep]+=1; - else: ## positive strand - if jS==a3ss[chr][group][c][5] and jE==a3ss[chr][group][c][0]: ## IJC - c_a3ss[c][CT1][sInd][I][rep]+=1; - c_a3ss[c][CT2][sInd][I][rep]+=1; - elif jS==a3ss[chr][group][c][5] and jE==a3ss[chr][group][c][2]: ## SJC - c_a3ss[c][CT1][sInd][S][rep]+=1; - c_a3ss[c][CT2][sInd][S][rep]+=1; - ### end of A3SS ### - -# ## AFE ### -# if chr in afe: ## this chromosome has afe event(s) -# if group in afe[chr]: ## this group has afe event(s) -# for c in afe[chr][group]: ## for each afe event in this group, examine if the given junction is part of it -# if afe[chr][group][c][4]>afe[chr][group][c][1]: ## positive strand -# if jS==afe[chr][group][c][3] and jE==afe[chr][group][c][4]: ## IJC -# c_afe[c][CT1][sInd][I][rep]+=1; -# c_afe[c][CT2][sInd][I][rep]+=1; -# elif jS==afe[chr][group][c][1] and jE==afe[chr][group][c][4]: ## SJC -# c_afe[c][CT1][sInd][S][rep]+=1; -# c_afe[c][CT2][sInd][S][rep]+=1; -# else: ## negative strand -# if jS==afe[chr][group][c][5] and jE==afe[chr][group][c][2]: ## IJC -# c_afe[c][CT1][sInd][I][rep]+=1; -# c_afe[c][CT2][sInd][I][rep]+=1; -# elif jS==afe[chr][group][c][5] and jE==afe[chr][group][c][0]: ## SJC -# c_afe[c][CT1][sInd][S][rep]+=1; -# c_afe[c][CT2][sInd][S][rep]+=1; -# ### end of AFE ### -# -# ## ALE ### -# if chr in ale: ## this chromosome has ale event(s) -# if group in ale[chr]: ## this group has ale event(s) -# for c in ale[chr][group]: ## for each ale event in this group, examine if the given junction is part of it -# if ale[chr][group][c][4]>ale[chr][group][c][1]: ## negative strand -# if jS==ale[chr][group][c][3] and jE==ale[chr][group][c][4]: ## IJC -# c_ale[c][CT1][sInd][I][rep]+=1; -# c_ale[c][CT2][sInd][I][rep]+=1; -# elif jS==ale[chr][group][c][1] and jE==ale[chr][group][c][4]: ## SJC -# c_ale[c][CT1][sInd][S][rep]+=1; -# c_ale[c][CT2][sInd][S][rep]+=1; -# else: ## positive strand -# if jS==ale[chr][group][c][5] and jE==ale[chr][group][c][2]: ## IJC -# c_ale[c][CT1][sInd][I][rep]+=1; -# c_ale[c][CT2][sInd][I][rep]+=1; -# elif jS==ale[chr][group][c][5] and jE==ale[chr][group][c][0]: ## SJC -# c_ale[c][CT1][sInd][S][rep]+=1; -# c_ale[c][CT2][sInd][S][rep]+=1; -# ### end of ALE ### - - ## RI ### - if chr in ri: ## this chromosome has ri event(s) - if group in ri[chr]: ## this group has ri event(s) - for c in ri[chr][group]: ## for each ri event in this group, examine if the given junction is part of it - if jS==ri[chr][group][c][3] and jE==ri[chr][group][c][4]: ## SJC - c_ri[c][CT1][sInd][S][rep]+=1; - c_ri[c][CT2][sInd][S][rep]+=1; - ### end of RI ### - - - else: ## it is not exonic nor junction read. proceed to the next line - continue; - - logging.debug("Done populating edeg count for %s with %d junctions" % (s1.strip(), len(e1))); - sFile.close(); - edgeFile = open(samDir+s1.strip()+'.edgeCount', 'w'); - for k in e1: - edgeFile.write(k+'\t'+str(e1[k])+'\n'); - edgeFile.close(); -##### end of processSample ###### - -if dataType=="skipThisForNow": ## call paired.. - logging.debug("Start processing sample_1: %s" % base_1); - processSample_PE(sample_1, S1, 72, 60); - logging.debug("Done processing %s" % base_1); -# logging.debug("Start processing sample_2: %s" % base_2); -# processSample_PE(sample_2, S2, 75, 62); -# logging.debug("Done processing %s" % base_2); -else: - logging.debug("Start processing sample_1: %s" % base_1); - processSample(sample_1, S1); - logging.debug("Done processing %s" % base_1); -# logging.debug("Start processing sample_2: %s" % base_2); -# processSample(sample_2, S2); -# logging.debug("Done processing %s" % base_2); - -### -#def writeInputFile(h1,h2,h3,f1,f2,f3,cnt,sup): ## header 1,2,3, file 1,2,3, count dict, supple dict) -def writeInputFile(h1,h2,h3,f1,f2,cnt,sup): ## header 1,2,3, file 1,2,3, count dict, supple dict) - ## print header first - f1.write(h1+'\n'); - f2.write(h2+'\n'); -# f3.write(h3+'\n'); - - for k in sorted(sup.keys()): - #f1.write(str(k)+'\t'+str(cnt[k][CT1][S1][I][0])+'\t'+str(cnt[k][CT1][S1][S][0])+'\t'+str(cnt[k][CT1][S2][I][0])+'\t'+str(cnt[k][CT1][S2][S][0])+'\t'+str(sup[k][CT1][0])+'\t'+str(sup[k][CT1][1])+'\n'); ## need to correct this to handle replicates... - #f2.write(str(k)+'\t'+str(cnt[k][CT2][S1][I][0])+'\t'+str(cnt[k][CT2][S1][S][0])+'\t'+str(cnt[k][CT2][S2][I][0])+'\t'+str(cnt[k][CT2][S2][S][0])+'\t'+str(sup[k][CT2][0])+'\t'+str(sup[k][CT2][1])+'\n'); ## need to correct this to handle replicates... - f1.write(str(k)+'\t'+','.join(map(str,cnt[k][CT1][S1][I]))+'\t'+','.join(map(str,cnt[k][CT1][S1][S]))+'\t'+str(sup[k][CT1][0])+'\t'+str(sup[k][CT1][1])+'\n'); ## need to correct this to handle replicates... - f2.write(str(k)+'\t'+','.join(map(str,cnt[k][CT2][S1][I]))+'\t'+','.join(map(str,cnt[k][CT2][S1][S]))+'\t'+str(sup[k][CT2][0])+'\t'+str(sup[k][CT2][1])+'\n'); ## need to correct this to handle replicates... -##### end of writeInputFile function ####### - -# -logging.debug("Writing out the rMATS input file.."); -# -CT1_header = 'ID\tIJC_'+base_1+'\tSJC_'+base_1+'\tIncFormLen\tSkipFormLen'; -CT2_header = 'ID\tIC_'+base_1+'\tSC_'+base_1+'\tIncFormLen\tSkipFormLen'; -CT3_header = 'ID\tIC_'+base_1+'\tSC_'+base_1+'\tIncFormLen\tSkipFormLen'; -# -## SE ## -#writeInputFile(CT1_header,CT2_header,CT3_header,JC_seFile,JCEC_seFile,JCECPE_seFile,c_se,s_se); -writeInputFile(CT1_header,CT2_header,CT3_header,JC_seFile,JCEC_seFile,c_se,s_se); -## MXE ## -#writeInputFile(CT1_header,CT2_header,CT3_header,JC_mxeFile,JCEC_mxeFile,JCECPE_mxeFile,c_mxe,s_mxe); -writeInputFile(CT1_header,CT2_header,CT3_header,JC_mxeFile,JCEC_mxeFile,c_mxe,s_mxe); -## A5SS ##... -#writeInputFile(CT1_header,CT2_header,CT3_header,JC_a5ssFile,JCEC_a5ssFile,JCECPE_a5ssFile,c_a5ss,s_a5ss); -writeInputFile(CT1_header,CT2_header,CT3_header,JC_a5ssFile,JCEC_a5ssFile,c_a5ss,s_a5ss); -## A3SS ##... -#writeInputFile(CT1_header,CT2_header,CT3_header,JC_a3ssFile,JCEC_a3ssFile,JCECPE_a3ssFile,c_a3ss,s_a3ss); -writeInputFile(CT1_header,CT2_header,CT3_header,JC_a3ssFile,JCEC_a3ssFile,c_a3ss,s_a3ss); -### AFE ## -#writeInputFile(CT1_header,CT2_header,CT3_header,JC_afeFile,JCEC_afeFile,JCECPE_afeFile,c_afe,s_afe); -### ALE ##... -#writeInputFile(CT1_header,CT2_header,CT3_header,JC_aleFile,JCEC_aleFile,JCECPE_aleFile,c_ale,s_ale); -## RI ##... -#writeInputFile(CT1_header,CT2_header,CT3_header,JC_riFile,JCEC_riFile,JCECPE_riFile,c_ri,s_ri); -writeInputFile(CT1_header,CT2_header,CT3_header,JC_riFile,JCEC_riFile,c_ri,s_ri); -# -#### close all files here ########## -seFile.close() -mxeFile.close() -a5ssFile.close() -a3ssFile.close() -#afeFile.close() -#aleFile.close() -riFile.close() -# -JC_seFile.close() -JC_mxeFile.close() -JC_a5ssFile.close() -JC_a3ssFile.close() -#JC_afeFile.close() -#JC_aleFile.close() -JC_riFile.close() -# -JCEC_seFile.close() -JCEC_mxeFile.close() -JCEC_a5ssFile.close() -JCEC_a3ssFile.close() -#JCEC_afeFile.close() -#JCEC_aleFile.close() -JCEC_riFile.close() -# -#JCECPE_seFile.close() -#JCECPE_mxeFile.close() -#JCECPE_a5ssFile.close() -#JCECPE_a3ssFile.close() -#JCECPE_afeFile.close() -#JCECPE_aleFile.close() -#JCECPE_riFile.close() -# -###################################### -# -infoEmail("Processing unique sam file is finished with no error!"); -# -############# -## calculate total running time -############# -logging.debug("Program ended"); -currentTime = time.time(); -runningTime = currentTime-startTime; ## in seconds -logging.debug("Program ran %.2d:%.2d:%.2d" % (runningTime/3600, (runningTime%3600)/60, runningTime%60)); -# -sys.exit(0); -# diff --git a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/summarizeallexoninc.pl b/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/summarizeallexoninc.pl deleted file mode 100644 index 87af695..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/pythonperlsrcs/summarizeallexoninc.pl +++ /dev/null @@ -1,157 +0,0 @@ -#!/usr/bin/perl -w - -#################### -# summarize AS events for all individuals for all 4 types of AS events. - - -###################################################################### -# read in the configuration file -if ( ($#ARGV+1) != 1 ) { - print "Usage: batch_allASevents.pl configfile \n"; - exit; -} -my $configfile =$ARGV[0]; - - - -####################### -# read in the configuration file -# - -# usage: readConfig("filename") -# returns: num. of parameters set -my @config_keys = (); - -sub readConfig -{ - my $filename=shift; - my $i=0; - - if(open(CONF, "<$filename")) - { - while() - { - # print $_ ; - if(/^\s*(\S+)\s*=\s*([^(#*|\s*)]+)/) - { - $$1=$2; - ++$i; - push @config_keys, $1 ; - } - } - return($i); - } - else - { - return(0); - } -} - - -########### -# -my $numparams = readConfig($configfile); -print "Read $numparams parameters from $configfile:\n\n" ; - -foreach $Config_key (@config_keys) { - - print "$Config_key = $$Config_key\n"; - -} -###################################################################### - - - -open ( IN0, "<$IDFILE"); -my @ids = ; -close(IN0) ; - -my $id1 = $ids[0]; -chomp($id1) ; - -#make directory unless it already exists -mkdir "Exon_Inc_Simple", 0777 unless -d "Exon_Inc_Simple"; -mkdir "Exon_Inc_Simple/AScounts", 0777 unless -d "Exon_Inc_Simple/AScounts"; - - -my @types = ("MXE","SE","A5SS","A3SS"); #,"RI"); -foreach my $type (@types) # ="SE" ; - { -my $file1 = "myOutput/JC.${id1}.$type.MATS.input.txt"; - -# Add splicing type to last column of each file - - -$cmmd = qq(perl -nle 'print "${type}_\$_"' ASEvents/$PROJECTTITLE.$type.txt > ASEvents/${PROJECTTITLE}2.$type.txt); -print $cmmd,"\n"; -system($cmmd) ; - -`cut -f1 ASEvents/${PROJECTTITLE}2.$type.txt > Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.IJ.txt`; -`cut -f1 ASEvents/${PROJECTTITLE}2.$type.txt > Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.SJ.txt`; -`cut -f4,5 $file1 |paste ASEvents/${PROJECTTITLE}2.$type.txt - > Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.exoninfor.txt`; - - - -#`cut -f1-7 $file1 > Exon_Inc_Simple/AScounts/$PROJECTTILE_PSI.txt`; -#`grep Exon_ID_list Exon_Inc_Simple/AScounts/$PROJECTTILE_UJ.txt >Exon_Inc_Simple/AScounts/title.txt`; - - - -my $idstr ="" ; -foreach my $id (@ids) { -chomp($id) ; -#print $id,"\n" ; -$idstr .="\t$id" ; - -my $file = "myOutput/JC.${id}.$type.MATS.input.txt"; - -`cut -f2 $file |sed -e 's/IJC_//' |paste Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.IJ.txt - > Exon_Inc_Simple/AScounts/tmp.txt`; -`mv Exon_Inc_Simple/AScounts/tmp.txt Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.IJ.txt `; -wait ; - -`cut -f3 $file |sed -e 's/SJC_//' |paste Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.SJ.txt - > Exon_Inc_Simple/AScounts/tmp.txt`; -`mv Exon_Inc_Simple/AScounts/tmp.txt Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.SJ.txt `; -wait ; - -} -if ($type eq "MXE") { -`cat Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.exoninfor.txt > Exon_Inc_Simple/AScounts/$PROJECTTITLE.alltype.exoninfor.txt`; -`cat Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.IJ.txt > Exon_Inc_Simple/AScounts/$PROJECTTITLE.alltype.IJ.txt`; -`cat Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.SJ.txt > Exon_Inc_Simple/AScounts/$PROJECTTITLE.alltype.SJ.txt`; -} - -else { -`cat Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.exoninfor.txt |grep -v ${type}_ID >> Exon_Inc_Simple/AScounts/$PROJECTTITLE.alltype.exoninfor.txt`; -`cat Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.IJ.txt |grep -v ${type}_ID >> Exon_Inc_Simple/AScounts/$PROJECTTITLE.alltype.IJ.txt`; -`cat Exon_Inc_Simple/AScounts/$PROJECTTITLE.$type.SJ.txt |grep -v ${type}_ID >> Exon_Inc_Simple/AScounts/$PROJECTTITLE.alltype.SJ.txt`; -} - - -} -#`echo $idstr >> Exon_Inc_Simple/title.txt`; - - - - - -#### Notice that MXE type have 2 extra columns for the 2nd exon. After this script, need to manually add 2 extra empty columns for the other types in file: Exon_Inc_Simple/AScounts/$PROJECTTITLE.alltype.exoninfor.txt - -my $OUTDIR = "Exon_Inc_Simple/AScounts/"; - - $cmmd = qq( -grep -v ^MXE $OUTDIR/$PROJECTTITLE.alltype.exoninfor.txt |cut -f1-7 >$OUTDIR/p1 -grep -v ^MXE $OUTDIR/$PROJECTTITLE.alltype.exoninfor.txt |cut -f8- >$OUTDIR/p2 -grep ^MXE $OUTDIR/$PROJECTTITLE.alltype.exoninfor.txt >$OUTDIR/p0 -perl -nle '{print "\\t\\t\$_"}' $OUTDIR/p2 >$OUTDIR/pp2 - -cp $OUTDIR/$PROJECTTITLE.alltype.exoninfor.txt $OUTDIR/$PROJECTTITLE.alltype.exoninfor0.txt - -paste $OUTDIR/p1 $OUTDIR/pp2 |cat $OUTDIR/p0 - > $OUTDIR/$PROJECTTITLE.alltype.exoninfor.txt -rm -rf $OUTDIR/p1 $OUTDIR/p2 $OUTDIR/p0 $OUTDIR/pp2 -echo Completed! -); - - -print $cmmd ; -system($cmmd) ; - diff --git a/GLIMMPS_pipline/GLiMMPScode/readme.GLiMMPS.txt b/GLIMMPS_pipline/GLiMMPScode/readme.GLiMMPS.txt deleted file mode 100644 index 00e981f..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/readme.GLiMMPS.txt +++ /dev/null @@ -1,10 +0,0 @@ -################# -# source code in 2 directories: -Rscripts/ -pythonperlsrcs/ - - -################ -# example data after the RNA sequence mapping processing and configuration file config.GLiMMPS.txt in -example/ - diff --git a/GLIMMPS_pipline/GLiMMPScode/runGLiMMPS.parallel.sh b/GLIMMPS_pipline/GLiMMPScode/runGLiMMPS.parallel.sh deleted file mode 100644 index 3986951..0000000 --- a/GLIMMPS_pipline/GLiMMPScode/runGLiMMPS.parallel.sh +++ /dev/null @@ -1,29 +0,0 @@ -#!/bin/bash -## Author: Yungang Xu (yungang.xu@hotmail.com) -##-------------Arguments----------- -## $1 chromosome id (without chr) 1,2,...,22 -## $2 population ID, CEU, GBR.... -## $3 path/to/alltype/, the path where the alltype/ folder located -## $4 path/to/genotype/, the path where the SNPs_plink/ folder located -## $5 [optional] the number threads for parallel running; defualt = 100. A bigger number may require more memory (100 threads need ~50GB). -##-------------Usage----------- -## bash runGLiMMPS.paallel.sh 1 CEU [100] -##-------------Output---------- -## two folders: -## parallel.tmpasso/ includes all associations, one file per AS event; one subfolder per chromosome; and one PDF per AS event that has at -## least one significant sQTL. This the main results of sQTLs -## parallel.tmpgeno/ includes all tempory files used by the statistical analysis. Usually for debugging only. - -## You may need to change the following paths so that the files could be fund. -exonInfo=$3/bychrs/exonsinfor.plink.5reads.chr$1.txt -allJunction=$3/bychrs/plink.5reads.allreads.chr$1.txt -InclJunction=$3/bychrs/plink.5reads.IJ.chr$1.txt -genotype=$4/SNPs_plink/$2.plink.$1 - -count=$(cat $exonInfo | wc -l ) # get the number of AS events -for (( i=1; i<$count; i++ )) # run GLiMMPS on all AS events -do -echo Processing AS $i -echo -Rscript /mnt/isilon/xing_lab/xuy5/GLIMMPS/Geuvadis/GLiMMPScode/Rscripts/sQTLregress.oneexon.parallel.R $exonInfo $allJunction $InclJunction $genotype $i $5 -done diff --git a/GLIMMPS_pipline/LICENSE b/GLIMMPS_pipline/LICENSE deleted file mode 100644 index f288702..0000000 --- a/GLIMMPS_pipline/LICENSE +++ /dev/null @@ -1,674 +0,0 @@ - GNU GENERAL PUBLIC LICENSE - Version 3, 29 June 2007 - - Copyright (C) 2007 Free Software Foundation, Inc. - Everyone is permitted to copy and distribute verbatim copies - of this license document, but changing it is not allowed. - - Preamble - - The GNU General Public License is a free, copyleft license for -software and other kinds of works. - - The licenses for most software and other practical works are designed -to take away your freedom to share and change the works. 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If your program is a subroutine library, you -may consider it more useful to permit linking proprietary applications with -the library. If this is what you want to do, use the GNU Lesser General -Public License instead of this License. But first, please read -. diff --git a/GLIMMPS_pipline/README.md b/GLIMMPS_pipline/README.md deleted file mode 100644 index 07589b4..0000000 --- a/GLIMMPS_pipline/README.md +++ /dev/null @@ -1,114 +0,0 @@ -# GLiMMPS_pipeline -## About -This repository contains the source codes of the pipeline for sQTL mapping and illustrates the usage by performing an example analysis on the data of Gevadis CEU population. -## Table of Contents -- [1. Prerequisites](#1) - - [1.1 STAR](#1.1) - - [1.2 samtools](#1.2) - - [1.3 vcftools](#1.3) - - [1.4 plink](#1.4) -- [2. Data preparation](#2) - - [2.1 RNA-seq data downlaod](#2.1) - - [2.2 QC and Alignment](#2.2) - - [2.3 Genotype data](#2.3) -- [3. Run GLiMMPs](#3) - - [3.1 Get AS event and junction read counts](#3.1) - - [3.2 Run statistic models for sQTLs](#3.2) -- [Contacts](#4) -- [Citation](#5) - -## 1. Prerequisites -The full pipeline starts with data download and ends with sQTL mapping using GLiMMPs, which requires all tools for fastq files download, quality control (QC), alignment, vcf manipulation, and running environments for GLiMMPs (Python, Perl, and R). -### 1.1 Download and install RNA-seq reads alignment tool `STAR` (version 2.6.1) -Refer to [STAR GitHub](https://github.com/alexdobin/STAR) page for detailed instructions. -### 1.2 Download and install BAM file tool `samtools`(version 1.9) -Refer to [samtools GitHub](https://github.com/samtools/samtools) page for detailed instructions. -### 1.3 Download and install `vcftools` (version 0.1.13) -Refer to [vcftools](https://vcftools.github.io/examples.html) page for detailed instructions. -### 1.4 Downlaod and install `plink` (version 1.07) -Refer to [plink](http://zzz.bwh.harvard.edu/plink/download.shtml) page for detailed instructions. - -## 2. Data download and processing (Geuvadis as example) -All shell scripts (.sh files) mentioned hereafter are located in the folder *data_download_process/*. -### 2.1 RNA-seq data download and processing -**(1) Download metadata** (sample list): Go to Geuvadis [Dataport](http://www.internationalgenome.org/data-portal/data-collection/geuvadis), select the *Data types* as `Sequence` and the *Analysis groups* as `mRNA`, and then click `Download the list` button to get the metadata (*igsr_Geuvadis.tsv.tsv*) of all five Geuvadis populations (CEU, FIN, GBR, TSI, and YRI). - -**(2) Batch download**: use `fastqDownloader.sh` to downlaod the samples you need. Take CEU population as example, first take out those lines for CEU from *igsr_Geuvadis.tsv.tsv*, you can run `grep "CEU" igsr_Geuvadis.tsv.tsv >> CEU_igsr_Geuvadis.tsv.tsv`; - -then run `bash fastqDownloader.sh CEU_igsr_Geuvadis.tsv.tsv 50` to download the fastq files for samples included in *CEU_igsr_Geuvadis.tsv.tsv* with 50 threads parallelly. - -fastq files will be downloaded and grouped into different folders named as the population ID, like CEU etc. All fastq files will also be renamed as \_\_1.fastq.gz, like NA06984_ERR188325_1.fastq.gz. - -### 2.2 QC and alignment -**(1) QC**: we ran trim_galore on the pairwise fastq files (set --paired) to make sure all reads have the same length of 75bp; and then run fastqc for QC filtering. - -**(2) Merge replicates for single individual**: after trim and QC, many of the idviduals will have more than one replicates, we merged the fastq files of replicates, so that each individual will have only one pair fastq files, named as \_1.fq.gz and \_2.fq.gz. In total, for CEU population, there will be 184 fastq files for 92 individuals. - -**(3) Alignment using STAR**: run `mapSTAR.sh ` to map the reads to hg19 genome and get the uniquely mapped reads. The unique.sam files will be in *sam_unique/* with the subfolder named with the . -### 2.3 Genotypes (vcf files) download and processin -**(1) Download vcf files**: run `vcfDownloader.sh` to download the vcf files from 1000 Genome data portal. - -**(2) convert the vcf files to .tped and .tmap**: The downstream sQTL analysis will use genotypes from `plink` formatted files with each chromosome in one file. Run `vcf2plink.sh` to get the formatted files from vcf files. Output files will be in **SNPs_plink/**. - -## 3. Run GLiMMPs pipeline -### 3.1 Obtain the junction read counts for all possible alternative splicing events in the population -**(1) Get all possible alternative splicing (AS) events in the population.** - -Customize the config.GLiMMPS.txt for the population, which contains main parapeters for all data processing. - - ```./GLiMMPscode/pythonperlsrcs/batch_allASevents.pl /GLiMMPscode/config.GLiMMPS.txt``` - -The above code will produce a job file named **submit_ASevents**, which has the command line to run `/GLiMMPScode/pythonperlsrcs/processGTF.SAMs.py` on the given population data. You can run it directly or submit this file to a HPC. - -The resulting AS events will be outputted in **/ASEvents/**. - -**(2) Get junction read count for all individuals**: - -run the following code to get the job file and configure files: -```./GLiMMPscode/pythonperlsrcs/batch_getASreads.pl /GLiMMPscode/config.GLiMMPS.txt``` -The above code will produce a folder named **tempconfig/**, which has the configurations to run embeded rMATs code for each individual of the given population data. - -The above code will also produce a job file named **submit_ASreadcounts**, which has the command lines to run `/GLiMMPScode/pythonperlsrcs/rMATS.processsUnique.singlesam.py` for each individual. You can run it one by one directly or submit this file to a HPC to run parallelly. - -After all above jobs were done, the resulted junction read counts for all 4 types of AS events per individual will be output in **myOutput/**. Then run the following code to sumerize the read counts across individuals: -```./GLiMMPscode/pythonperlsrcs/summarizeallexoninc.pl /GLiMMPscode/config.GLiMMPS.txt``` -The above code will put the summerized read counts into **Exon_Inc_Simple/AScounts/**. - -**(3) Filter the AS events**: -Finally run the following code to filter out the AS events with no or little change in exon inclusion level (|Δψ|<0.1) or few total junction read counts (median n <5) in the population. -``` -cd Exon_Inc_Simple -./GLiMMPScode/Rscripts/summarystat_exonmin5.R -``` -The above code will produce files in **Exon_Inc_Simple/alltype/**, which will be used as input for statictical models. - -### 3.2 Run statistical models for sQTLs -After above step, we have the AS exon information, the inclusion junction and total junction read counts matrix for all individuals (in **Exon_Inc_Simple/alltype/**), as well ase the plink-format genotype files (in **SNPs_plink/**). - -The sQTL analysis can be performed for each chromosome using script in **/GLiMMPScode/run.GLiMMPS.parallel.sh**. - -**Parameters/arguments for this script:** - - - **chr_id** \, the chromosome to be analyzed, number only without 'chr', i.e. {1..22} - - **population_id** \, the population ID, i.e. {CEU, GBR, ...}, which will be used to locate the genotype files - - **path_to_AS** \, the path to **alltype/** generated by step 3.2. - - **path_to_genotype** \, path to **SNPs_plink/** generated by step 2.3. - - **thread_number** \, the mumber of threads to used for parallel running. Defalt = 100 (required ~50GB memory for CEU). - -**Usage:** run statistic models on chr1 for CEU population with 100 threads. - - ```./runGLiMMPS.parallel.sh 1 CEU alltype SNPS_plink 100``` - -**Outputs:** - - Two folders: - - **parallel.tmpasso/** includes all associations, one file per AS event; one subfolder per chromosome; and one PDF per AS event that has at least one significant sQTL. These are the main results of sQTLs. - - **parallel.tmpgeno/** includes all tempory files used by the statistical analysis. For debugging only. - -## Contacts -Yi Xing (Yi.Xing@pennmedicine.upenn.edu) - -Yungang Xu (yungang.xu@hotmail.com) - -## Citation -\[1\] Zhao, K., Lu, Z. X., Park, J. W., Zhou, Q., & Xing, Y. (2013). GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data. Genome biology, 14(7), R74. diff --git a/GLIMMPS_pipline/data_download_process/CEU.samples.txt b/GLIMMPS_pipline/data_download_process/CEU.samples.txt deleted file mode 100644 index e28eafa..0000000 --- a/GLIMMPS_pipline/data_download_process/CEU.samples.txt +++ /dev/null @@ -1,92 +0,0 @@ -NA06986 -NA06994 -NA07346 -NA07357 -NA11832 -NA11894 -NA11920 -NA11993 -NA11994 -NA12043 -NA12283 -NA12286 -NA12400 -NA12413 -NA12750 -NA12751 -NA12763 -NA12813 -NA12872 -NA06984 -NA06985 -NA06989 -NA07000 -NA07037 -NA07048 -NA07051 -NA07056 -NA07347 -NA10847 -NA10851 -NA11829 -NA11830 -NA11831 -NA11840 -NA11843 -NA11881 -NA11892 -NA11893 -NA11918 -NA11930 -NA11931 -NA11992 -NA11995 -NA12004 -NA12005 -NA12006 -NA12044 -NA12045 -NA12058 -NA12144 -NA12154 -NA12155 -NA12156 -NA12234 -NA12249 -NA12272 -NA12273 -NA12275 -NA12282 -NA12287 -NA12340 -NA12341 -NA12342 -NA12347 -NA12348 -NA12383 -NA12399 -NA12489 -NA12546 -NA12716 -NA12717 -NA12718 -NA12749 -NA12760 -NA12761 -NA12762 -NA12775 -NA12776 -NA12777 -NA12778 -NA12812 -NA12814 -NA12815 -NA12827 -NA12829 -NA12830 -NA12842 -NA12843 -NA12873 -NA12874 -NA12889 -NA12890 diff --git a/GLIMMPS_pipline/data_download_process/CEU_igsr_Geuvadis.tsv.tsv b/GLIMMPS_pipline/data_download_process/CEU_igsr_Geuvadis.tsv.tsv deleted file mode 100644 index e7f9246..0000000 --- a/GLIMMPS_pipline/data_download_process/CEU_igsr_Geuvadis.tsv.tsv +++ /dev/null @@ -1,324 +0,0 @@ -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204839/ERR204839_2.fastq.gz fa12be137cdb5e9dbd784d342c43b48c Geuvadis sequence mRNA NA12761 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204841/ERR204841_1.fastq.gz 0dffd16fa6769e0c7f6b9b80da90dcbd Geuvadis sequence mRNA NA11994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204839/ERR204839_1.fastq.gz 621f5134b59f73e048c0e46ebe4d2747 Geuvadis sequence mRNA NA12761 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204990/ERR204990_1.fastq.gz 7518d36a0164d62bf935c4c5a083dd5b Geuvadis sequence mRNA NA07037 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204990/ERR204990_2.fastq.gz b9246fe27c299e7c03d9629b1006d58a Geuvadis sequence mRNA NA07037 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204960/ERR204960_2.fastq.gz a09423f44362ec59a3e128935429d7a7 Geuvadis sequence mRNA NA07048 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204841/ERR204841_2.fastq.gz 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4f5c06e0a24caf02e482ccda1a62fa5f Geuvadis sequence mRNA NA06994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204915/ERR204915_2.fastq.gz 576c18510448e70865dd188fb4e09baa Geuvadis sequence mRNA NA12413 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204944/ERR204944_1.fastq.gz 594da74474ba1fd4ad7c2d844258d06e Geuvadis sequence mRNA NA12340 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204910/ERR204910_1.fastq.gz 3dcea38e73d0cd7941d06f9bf5d48302 Geuvadis sequence mRNA NA12829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204886/ERR204886_1.fastq.gz 9a896b6c666b7f463ddc00f9e13d04dc Geuvadis sequence mRNA NA07357 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205001/ERR205001_2.fastq.gz 2aff4ebd1ff84ff107a28c88b8b6ebb1 Geuvadis sequence mRNA NA11992 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204915/ERR204915_1.fastq.gz ff16f02c242534b2f059f28956d8208e Geuvadis sequence mRNA NA12413 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204836/ERR204836_2.fastq.gz a4a83a58adeab52ed2f51e514bce1920 Geuvadis sequence mRNA NA12763 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205001/ERR205001_1.fastq.gz 159ad41dc8ce1f31ad410ba7ed9fb66e Geuvadis sequence mRNA NA11992 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204856/ERR204856_1.fastq.gz de1fb3872cf78492f46c99873758054b Geuvadis sequence mRNA NA12275 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204910/ERR204910_2.fastq.gz dfbf7e150a53681dca5846282d318ca7 Geuvadis sequence mRNA NA12829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204886/ERR204886_2.fastq.gz a9567017ffb1a02603806b5517d2bcd0 Geuvadis sequence mRNA NA07357 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204974/ERR204974_1.fastq.gz e9294a59d7c7582059e51ccc188948a2 Geuvadis sequence mRNA NA12234 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204836/ERR204836_1.fastq.gz 1575b39fc8b55722e2f228f68445b28d Geuvadis sequence mRNA NA12763 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204939/ERR204939_2.fastq.gz ab7ccee33b766093e8cf23ad634aab65 Geuvadis sequence mRNA NA12155 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204856/ERR204856_2.fastq.gz 52723eacd1fe8f60bb7d7ffd9285820c Geuvadis sequence mRNA NA12275 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204939/ERR204939_1.fastq.gz fab339c70b8088e28f6ed1908db7141f Geuvadis sequence mRNA NA12155 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204962/ERR204962_2.fastq.gz 3293c7bd71a1c3ec3fa2eba2d585f80b Geuvadis sequence mRNA NA12813 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204974/ERR204974_2.fastq.gz 9956996b6c57aefc3dddf1bd893f7c4f Geuvadis sequence mRNA NA12234 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204962/ERR204962_1.fastq.gz 6d7646af16fd62e1b691a8ee2277ba14 Geuvadis sequence mRNA NA12813 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204927/ERR204927_1.fastq.gz 3b0f82bfa6ed0bffa809d977497fd049 Geuvadis sequence mRNA NA12814 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204926/ERR204926_2.fastq.gz a383778693f21e883ef07ebfa68600f5 Geuvadis sequence mRNA NA10851 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204967/ERR204967_2.fastq.gz 328687c97a1d3413baf1a15bcfad62de Geuvadis sequence mRNA NA11893 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204855/ERR204855_1.fastq.gz e56f0926f553a7a060a25e7f67f49fd8 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204926/ERR204926_1.fastq.gz 0de924d51dcab96ef889d4489e19495a Geuvadis sequence mRNA NA10851 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204900/ERR204900_2.fastq.gz aae44bd3bff4936f8b4cf54a3e86a155 Geuvadis sequence mRNA NA11829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204927/ERR204927_2.fastq.gz 53cc508c235e55b68a497dad584a05ba Geuvadis sequence mRNA NA12814 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204992/ERR204992_1.fastq.gz b4ad46bb94f8f66cd193645325598685 Geuvadis sequence mRNA NA11830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204855/ERR204855_2.fastq.gz 347d0a4ba3f7c634533536374d233314 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204921/ERR204921_1.fastq.gz a8d9a065cb6ba69968d9ab2c0a75605a Geuvadis sequence mRNA NA11894 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204900/ERR204900_1.fastq.gz 0d43db1cf4f40ee7b868ea661b69f7b1 Geuvadis sequence mRNA NA11829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204822/ERR204822_2.fastq.gz 173e0a45b69d7fcd838e0ba356fd5906 Geuvadis sequence mRNA NA12889 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204822/ERR204822_1.fastq.gz 96e6a2f1936e5af16da37bfa340cd161 Geuvadis sequence mRNA NA12889 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204967/ERR204967_1.fastq.gz ad514c9e497150864d63d9bfd3d131e4 Geuvadis sequence mRNA NA11893 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204863/ERR204863_2.fastq.gz 2c37d7131a4c805ef7a7706470180deb Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204921/ERR204921_2.fastq.gz d2d99723c3ef8ed44973ee1046374e79 Geuvadis sequence mRNA NA11894 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204992/ERR204992_2.fastq.gz 5c5a49c932e7a6798e1083b7de75333f Geuvadis sequence mRNA NA11830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204899/ERR204899_1.fastq.gz 60bb52756ba338f9de9b42ff7c1522a8 Geuvadis sequence mRNA NA12716 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205003/ERR205003_2.fastq.gz f2d69fa430b0442337bb0e958895d36b Geuvadis sequence mRNA NA12058 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204860/ERR204860_1.fastq.gz 01bcb8f1857457bbee1da1a5800304ab Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204899/ERR204899_2.fastq.gz ed0fe46ceeb6a18429cbbdd666d61f64 Geuvadis sequence mRNA NA12716 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204924/ERR204924_2.fastq.gz bc0db869f436606b2e896c96175be8c7 Geuvadis sequence mRNA NA12045 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204863/ERR204863_1.fastq.gz c9bdca1c24a5541bcbc1f5e3c7db850e Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204885/ERR204885_1.fastq.gz d770f981e60324dab69c363c9dd59ff5 Geuvadis sequence mRNA NA11840 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205022/ERR205022_2.fastq.gz 0847eee57a022cd31ce2aaacf64f1e60 Geuvadis sequence mRNA NA12156 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204968/ERR204968_2.fastq.gz f89097d78b1b2745cb01dd38f04354df Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205003/ERR205003_1.fastq.gz 671054a324c8defc66ae1bbb4273f336 Geuvadis sequence mRNA NA12058 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204860/ERR204860_2.fastq.gz d8b8463b38a872c167754ad218af7229 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204853/ERR204853_1.fastq.gz 578a2b578740ed8e2ba365568f5eaab8 Geuvadis sequence mRNA NA07347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204853/ERR204853_2.fastq.gz 60c8bf4cc8747a8eea17c97a21d387ab Geuvadis sequence mRNA NA07347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204964/ERR204964_2.fastq.gz a94c1d24a4149df4d373a70c201bb9dd Geuvadis sequence mRNA NA12348 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204924/ERR204924_1.fastq.gz dfe813b74f07e6a7529ea7c83726ebed Geuvadis sequence mRNA NA12045 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204898/ERR204898_1.fastq.gz 321e78c07e92ae7c0d717cf38a562ea1 Geuvadis sequence mRNA NA12776 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204885/ERR204885_2.fastq.gz 54760c9589e1cd05c630163c0d26ac2b Geuvadis sequence mRNA NA11840 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205022/ERR205022_1.fastq.gz caf2f956b7d0ab9a9778f2cb13c73aa1 Geuvadis sequence mRNA NA12156 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204968/ERR204968_1.fastq.gz ed12f65491f239e9a28d84f99d1f34e5 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204943/ERR204943_2.fastq.gz 9a2da452e40b010f57b0d9978a8f47c9 Geuvadis sequence mRNA NA12750 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204983/ERR204983_1.fastq.gz 83ffef276d7e426ff4acd4c5d6642747 Geuvadis sequence mRNA NA12762 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204898/ERR204898_2.fastq.gz 8a19fadf2f8060e10539fa5d93162425 Geuvadis sequence mRNA NA12776 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204897/ERR204897_2.fastq.gz 95ac443b5f14865666fd9f4401594dac Geuvadis sequence mRNA NA12399 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204964/ERR204964_1.fastq.gz 4850de4726ce3386f3c8a2707dd81d7c Geuvadis sequence mRNA NA12348 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204983/ERR204983_2.fastq.gz 4dc122910ed22abd84764cea2a80cde4 Geuvadis sequence mRNA NA12762 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204897/ERR204897_1.fastq.gz 0434eea1ead6d0963e83676cf551816c Geuvadis sequence mRNA NA12399 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204876/ERR204876_1.fastq.gz cc3efcd620a354b3275284576ec54d83 Geuvadis sequence mRNA NA11995 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204876/ERR204876_2.fastq.gz e58e557129f6b7acf896ba86cb3ff813 Geuvadis sequence mRNA NA11995 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204943/ERR204943_1.fastq.gz b8dd25bdcf05742f1fb53656038a971a Geuvadis sequence mRNA NA12750 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204907/ERR204907_1.fastq.gz 347879063e7f118e0a933515d815ccd3 Geuvadis sequence mRNA NA12283 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204907/ERR204907_2.fastq.gz c62ee355cfa40380d7304c22205ef351 Geuvadis sequence mRNA NA12283 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204979/ERR204979_2.fastq.gz 2d2a433fb98ff5798c298b6b12390f0b Geuvadis sequence mRNA NA12282 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204976/ERR204976_1.fastq.gz 86fdec3dd57887787a18553e89561732 Geuvadis sequence mRNA NA12874 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204893/ERR204893_2.fastq.gz c792488c81584c4075ee24edea3206fc Geuvadis sequence mRNA NA12843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204893/ERR204893_1.fastq.gz a501c1b6ffff04e288387d9a1d0230cf Geuvadis sequence mRNA NA12843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204979/ERR204979_1.fastq.gz 51045533ecc45df34b0c298864e8dae6 Geuvadis sequence mRNA NA12282 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205014/ERR205014_1.fastq.gz a889c376370d7fe362775c2e07057260 Geuvadis sequence mRNA NA07346 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204955/ERR204955_1.fastq.gz 5140a3a7e1e5d13e3329dca3a4ab1485 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204945/ERR204945_2.fastq.gz e24922d1784a72ca3d0473aa93573793 Geuvadis sequence mRNA NA12154 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204976/ERR204976_2.fastq.gz 775590a538347f2d1a9b555d757eacd6 Geuvadis sequence mRNA NA12874 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204999/ERR204999_2.fastq.gz 29def3c01256beb0fc4bca56deacb6dc Geuvadis sequence mRNA NA10847 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204881/ERR204881_1.fastq.gz fdb9fecded700c58e194a496c9cde8f4 Geuvadis sequence mRNA NA07000 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204881/ERR204881_2.fastq.gz 77235c6b1c25df03f884e657e858cf42 Geuvadis sequence mRNA NA07000 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204955/ERR204955_2.fastq.gz 5d48cdf935d841d9701f37020e5e3dd5 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205014/ERR205014_2.fastq.gz 0d03679bdadef65e0f70477a12a5bbd4 Geuvadis sequence mRNA NA07346 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205010/ERR205010_2.fastq.gz 12ccdbe1925750992007b53cb8b4fc4d Geuvadis sequence mRNA NA12842 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204902/ERR204902_2.fastq.gz 85be4acc9bedf0e5d4b0a4c5c449416c Geuvadis sequence mRNA NA12043 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205011/ERR205011_1.fastq.gz f899d99a8de0c6f55a24e5f8c3230131 Geuvadis sequence mRNA NA12777 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204945/ERR204945_1.fastq.gz 76e8d9d4fe6df2481258f25378455dbe Geuvadis sequence mRNA NA12154 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204999/ERR204999_1.fastq.gz 3ccd53c3f3a91cf1f1eef5dbedce8f89 Geuvadis sequence mRNA NA10847 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205010/ERR205010_1.fastq.gz 58b68f874e76315e37f5e82987ce3241 Geuvadis sequence mRNA NA12842 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205023/ERR205023_2.fastq.gz 4be84010bd0a4e8969e1739336e49dae Geuvadis sequence mRNA NA11843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204902/ERR204902_1.fastq.gz c9dc7d8ca46991d1096ec448c4fdd0a7 Geuvadis sequence mRNA NA12043 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204869/ERR204869_2.fastq.gz 8a2cb048ff9482fbc2224b6dd7c473d7 Geuvadis sequence mRNA NA12144 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205011/ERR205011_2.fastq.gz 178954c740eecdd4cb748a325f8fcae9 Geuvadis sequence mRNA NA12777 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204931/ERR204931_1.fastq.gz 348f67c132519c287b57033b1012d75f Geuvadis sequence mRNA NA11831 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204833/ERR204833_2.fastq.gz 329f7bf52a35a2a19a0045bb19277810 Geuvadis sequence mRNA NA12873 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204869/ERR204869_1.fastq.gz eb6f424818ef9f00a234dca9fece3683 Geuvadis sequence mRNA NA12144 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204834/ERR204834_2.fastq.gz fe1e4e583969452e90c613c2f0486460 Geuvadis sequence mRNA NA11930 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205023/ERR205023_1.fastq.gz e213bc15608d9f541e9183b182f7a72b Geuvadis sequence mRNA NA11843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204932/ERR204932_2.fastq.gz 6aa28755d8f5864b40eaf0838e8f8ce2 Geuvadis sequence mRNA NA12006 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204932/ERR204932_1.fastq.gz 14072834e1610a836d8b76ae4902d92c Geuvadis sequence mRNA NA12006 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204941/ERR204941_1.fastq.gz eb9bb0d87731098b7eeca7d63566b84d Geuvadis sequence mRNA NA12751 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204931/ERR204931_2.fastq.gz 40b0c240bcd141c25a52d0aa38ad2387 Geuvadis sequence mRNA NA11831 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204834/ERR204834_1.fastq.gz 59f361cf884e59e03c04a3cff5976657 Geuvadis sequence mRNA NA11930 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204833/ERR204833_1.fastq.gz afafb1d6e5d580a0fbd54e298fdb9956 Geuvadis sequence mRNA NA12873 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204867/ERR204867_2.fastq.gz d7f0061d2032dd555d0b7e1e8bde1c4b Geuvadis sequence mRNA NA12004 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204867/ERR204867_1.fastq.gz e20cf4e894a786a94cdceb22e5d78089 Geuvadis sequence mRNA NA12004 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204941/ERR204941_2.fastq.gz 7d3b8fbfb16ee3c27de1c70b221984b0 Geuvadis sequence mRNA NA12751 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204973/ERR204973_1.fastq.gz 3b1afbafe435af20c59f1d4043d656f9 Geuvadis sequence mRNA NA12400 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204819/ERR204819_1.fastq.gz b53f19072e94d3930be9174cffd91402 Geuvadis sequence mRNA NA12760 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205005/ERR205005_2.fastq.gz 1d1613955162e64c647c6533b1dbbab2 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204986/ERR204986_1.fastq.gz c2bcb01593f98b60327de2fbf7734a91 Geuvadis sequence mRNA NA12872 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204840/ERR204840_2.fastq.gz d17a6a010f9c33b6f9c851a3524150b8 Geuvadis sequence mRNA NA12827 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204840/ERR204840_1.fastq.gz aedb22a5dce58d1846047324b51aeda9 Geuvadis sequence mRNA NA12827 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204986/ERR204986_2.fastq.gz 6566e13016d9ec8f06d1f3c2eb1dd712 Geuvadis sequence mRNA NA12872 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204973/ERR204973_2.fastq.gz 0c6635d37e0a6c4873a185c5ec54b899 Geuvadis sequence mRNA NA12400 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204819/ERR204819_2.fastq.gz 4bdd66bf3f6f5f52c04461639e3c8148 Geuvadis sequence mRNA NA12760 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205005/ERR205005_1.fastq.gz 7f86bd0d8ef53aba97edb1960d620a3d Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188077/ERR188077_1.fastq.gz 9646bebdcd518b1bfac9be075ca8a69c Geuvadis sequence mRNA NA11893 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188181/ERR188181_1.fastq.gz bbaf1542253f0dec2d638858b4c4ef07 Geuvadis sequence mRNA NA12413 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188220/ERR188220_1.fastq.gz 841b9234f766fdd2ca076f75bef40bf4 Geuvadis sequence mRNA NA12400 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188217/ERR188217_1.fastq.gz d8e7a2f6fff63e5980fec7ec1bca7128 Geuvadis sequence mRNA NA11832 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188196/ERR188196_1.fastq.gz 29be163b39bbbc083d4c524a91e4b796 Geuvadis sequence mRNA NA12717 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188077/ERR188077_2.fastq.gz bf5fcde17a746e218221ec3560d1435d Geuvadis sequence mRNA NA11893 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188100/ERR188100_1.fastq.gz 7151bac6e7f1e765663683545b7a8e54 Geuvadis sequence mRNA NA12762 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188217/ERR188217_2.fastq.gz 8fab0115597a9ed0a94bf7df256cff6e Geuvadis sequence mRNA NA11832 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188220/ERR188220_2.fastq.gz 01cf64b2aea7db023a6b241024e6bb1b Geuvadis sequence mRNA NA12400 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188107/ERR188107_1.fastq.gz 832e7dcab80f80304a9073cbdfee6ed4 Geuvadis sequence mRNA NA12342 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188272/ERR188272_1.fastq.gz d1aebaad3820fd57f796742a652c1d06 Geuvadis sequence mRNA NA11881 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188181/ERR188181_2.fastq.gz 5b83566f834d55b2c28f0b8f0ab7c214 Geuvadis sequence mRNA NA12413 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188196/ERR188196_2.fastq.gz 8148f7212f801c7955678f63b87ffd44 Geuvadis sequence mRNA NA12717 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188100/ERR188100_2.fastq.gz bd8cfd514d02ce452135aeac89950c5d Geuvadis sequence mRNA NA12762 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188272/ERR188272_2.fastq.gz bf45c8634dc41f57cc548c3ebe10d92a Geuvadis sequence mRNA NA11881 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188107/ERR188107_2.fastq.gz f928db2154e4f5d39ad7a33dc4d0738d Geuvadis sequence mRNA NA12342 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188301/ERR188301_2.fastq.gz 9cf131544389c23543f3ee89e2b53c9f Geuvadis sequence mRNA NA11994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188024/ERR188024_1.fastq.gz aeaa1770aa431030d37e68a7e5292bc2 Geuvadis sequence mRNA NA12749 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188122/ERR188122_2.fastq.gz 7f259c5f2ba8d12072cfa191411117b8 Geuvadis sequence mRNA NA11894 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188301/ERR188301_1.fastq.gz 8e57e5e6eec9b53e4378d4aea65df6d5 Geuvadis sequence mRNA NA11994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188426/ERR188426_1.fastq.gz 1bf380bc4f83385b21e2ab91c2a255ee Geuvadis sequence mRNA NA11843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188049/ERR188049_2.fastq.gz d18625d4950ec7a2ec0f98821344387d Geuvadis sequence mRNA NA11931 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188426/ERR188426_2.fastq.gz 6c1883cd688b9fd1e7e0a184ff81a137 Geuvadis sequence mRNA NA11843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188308/ERR188308_1.fastq.gz accfd12649ee50c5e121d38380816a85 Geuvadis sequence mRNA NA12760 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188024/ERR188024_2.fastq.gz 0fb2ce6c6f2dc59835be57fa5f941888 Geuvadis sequence mRNA NA12749 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188122/ERR188122_1.fastq.gz 0913c98b1ba28c3b7bbd091677809424 Geuvadis sequence mRNA NA11894 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188350/ERR188350_2.fastq.gz 3b21beaad5c6e43db20fec3afe9deb6a Geuvadis sequence mRNA NA12399 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188049/ERR188049_1.fastq.gz 7943a064b3eaecc7a95854d51c014cea Geuvadis sequence mRNA NA11931 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188350/ERR188350_1.fastq.gz e973a6b799be40e288324f14d6663f16 Geuvadis sequence mRNA NA12399 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188308/ERR188308_2.fastq.gz 9188c7ee17585ffc3cf27c1822f5241c Geuvadis sequence mRNA NA12760 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188477/ERR188477_1.fastq.gz 51ca71b37a4ccb9fc049cc5fab4d2dfd Geuvadis sequence mRNA NA12778 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188336/ERR188336_1.fastq.gz 7f15abd8fda8027b3112b0c9543ac0d2 Geuvadis sequence mRNA NA12004 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188477/ERR188477_2.fastq.gz 13cac8631bb4f04ff9d8b3221423fb48 Geuvadis sequence mRNA NA12778 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188336/ERR188336_2.fastq.gz 98724655c46c9d5259fb6cc67912736e Geuvadis sequence mRNA NA12004 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188262/ERR188262_1.fastq.gz b164ca8eb82f4c8b761f068539533451 Geuvadis sequence mRNA NA12283 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188481/ERR188481_1.fastq.gz 1030d395fa78f7d59652f10737579b9e Geuvadis sequence mRNA NA07048 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188414/ERR188414_1.fastq.gz 4a9ae2ea49c5350effc4fadd48328215 Geuvadis sequence mRNA NA12043 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188438/ERR188438_1.fastq.gz 278554070179276eb320d5cbdbf819a8 Geuvadis sequence mRNA NA12272 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188438/ERR188438_2.fastq.gz 1ce7fd34051651519a4d591821a8ebed Geuvadis sequence mRNA NA12272 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188262/ERR188262_2.fastq.gz 78a6e1ce95384b6fc33ce670d7bcbaf0 Geuvadis sequence mRNA NA12283 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188481/ERR188481_2.fastq.gz b50eea75898fc1567949e91ea9236e3a Geuvadis sequence mRNA NA07048 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188404/ERR188404_1.fastq.gz 22a4592a2111604412500369ee590fff Geuvadis sequence mRNA NA12750 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188081/ERR188081_1.fastq.gz c2024b319ccea3b9bb056913d9268c2b Geuvadis sequence mRNA NA12814 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188414/ERR188414_2.fastq.gz 4ecb7dd0d1c0121d3863cf0328ae1135 Geuvadis sequence mRNA NA12043 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188039/ERR188039_2.fastq.gz 5e17018813ef37e9d8cf565005a930a6 Geuvadis sequence mRNA NA12144 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188229/ERR188229_1.fastq.gz 079d68acf0428be7fe06b59417ff9a0a Geuvadis sequence mRNA NA12044 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188324/ERR188324_1.fastq.gz 1508f35a2fa9a9e3d22fba0b3238107c Geuvadis sequence mRNA NA07347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188039/ERR188039_1.fastq.gz 90195a9a439dbce1013550013f08d50f Geuvadis sequence mRNA NA12144 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188404/ERR188404_2.fastq.gz 70e8e806c9b4adef4296837bd734e305 Geuvadis sequence mRNA NA12750 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188081/ERR188081_2.fastq.gz 529a1515df4bde03bab7ad7a42f1e1dc Geuvadis sequence mRNA NA12814 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188061/ERR188061_1.fastq.gz 2f48c2eaa43b5457e546d7f9a9b892b0 Geuvadis sequence mRNA NA12761 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188324/ERR188324_2.fastq.gz c9bc91f3c255b377c36be1ab1c7a139d Geuvadis sequence mRNA NA07347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188229/ERR188229_2.fastq.gz 142637bb4e53d0552c1db94dde27a109 Geuvadis sequence mRNA NA12044 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188389/ERR188389_2.fastq.gz c91446d4654cc1f327d270149bb2a543 Geuvadis sequence mRNA NA10851 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188389/ERR188389_1.fastq.gz 5cb8f7b9dcc829ebdc15ae1e82a921ee Geuvadis sequence mRNA NA10851 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188061/ERR188061_2.fastq.gz 6facf7fd65abadf9a9682c0ce5fe1642 Geuvadis sequence mRNA NA12761 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188213/ERR188213_1.fastq.gz 9dd27fce46f88b6c95a6c6660f01470d Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188410/ERR188410_1.fastq.gz 2611b9fbc7de5f39d095c571bb6da789 Geuvadis sequence mRNA NA12156 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188213/ERR188213_2.fastq.gz d64d8c1fa78e4af445ce433fe1436600 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188076/ERR188076_1.fastq.gz 12c3aaa577eb096c4400325f24fddca8 Geuvadis sequence mRNA NA12006 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188076/ERR188076_2.fastq.gz f0f4992309f230a7bf0ad9e63b1e5f78 Geuvadis sequence mRNA NA12006 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188048/ERR188048_1.fastq.gz 296d0a8ef3c41db07c8dac90b81d92e8 Geuvadis sequence mRNA NA12489 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188410/ERR188410_2.fastq.gz 92cde42d22dab6eed7803e2aad996255 Geuvadis sequence mRNA NA12156 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188148/ERR188148_1.fastq.gz 620b4d0926e726e6eea1b63652fc600b Geuvadis sequence mRNA NA12282 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188429/ERR188429_1.fastq.gz 7cf22bc2c759af35e738721c10ed8297 Geuvadis sequence mRNA NA12889 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188140/ERR188140_2.fastq.gz d369863e1905c54f6f9fcc8af2e94fc9 Geuvadis sequence mRNA NA12716 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188048/ERR188048_2.fastq.gz 9f4a80da2f0d5b03b25ab88eb3be8094 Geuvadis sequence mRNA NA12489 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188140/ERR188140_1.fastq.gz b7b1e35964c3460df9b8781901bd8730 Geuvadis sequence mRNA NA12716 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188148/ERR188148_2.fastq.gz d33f10288f03f047d0eb843a59637022 Geuvadis sequence mRNA NA12282 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188202/ERR188202_2.fastq.gz edcf4c7381900df9cd16123119ef5df8 Geuvadis sequence mRNA NA06989 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188429/ERR188429_2.fastq.gz c74e43baa4f84a1c3b9154fd7cb91580 Geuvadis sequence mRNA NA12889 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188058/ERR188058_1.fastq.gz 5e0341d459655bff014b86c497e1cc1d Geuvadis sequence mRNA NA12005 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188202/ERR188202_1.fastq.gz 6f90c78e518a6999a42503e4fb8f93f7 Geuvadis sequence mRNA NA06989 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188216/ERR188216_2.fastq.gz d5ca43f97c2e9c476b25b1a0ee30cf0a Geuvadis sequence mRNA NA12873 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188216/ERR188216_1.fastq.gz e731adb726f096bfe3b3f9aa6b2596b1 Geuvadis sequence mRNA NA12873 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188058/ERR188058_2.fastq.gz 33f1f2cc357364e5c4df1844928a4962 Geuvadis sequence mRNA NA12005 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188022/ERR188022_2.fastq.gz c91d541f18c6b30bf97f927dec1dc08c Geuvadis sequence mRNA NA12812 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188433/ERR188433_2.fastq.gz 3d4266055982ee0c775ebad4e700adcc Geuvadis sequence mRNA NA11829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188435/ERR188435_2.fastq.gz b2a833b8c96bba6f568445f51a04e89c Geuvadis sequence mRNA NA11830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188022/ERR188022_1.fastq.gz 9fabad7e2b8d6c7b441ff9fcccbf639c Geuvadis sequence mRNA NA12812 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188377/ERR188377_1.fastq.gz 74e23bf32b4a7a8712fb328ad2547ecc Geuvadis sequence mRNA NA12045 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188377/ERR188377_2.fastq.gz fddebb1ca138441312e30b500df2b607 Geuvadis sequence mRNA NA12045 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188433/ERR188433_1.fastq.gz 3bff3de73a53359120d4b005d4404f42 Geuvadis sequence mRNA NA11829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188435/ERR188435_1.fastq.gz 1ebb7e4bbe5da11d15f28a247b5d2891 Geuvadis sequence mRNA NA11830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188327/ERR188327_2.fastq.gz 489b445a6feca2fa9c64acb4f020679e Geuvadis sequence mRNA NA06985 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188327/ERR188327_1.fastq.gz 207cc4c439c6f0b69f488998fcadf42e Geuvadis sequence mRNA NA06985 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188152/ERR188152_2.fastq.gz cbd5026b8c9c06929c96e69e36da27b2 Geuvadis sequence mRNA NA12751 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188152/ERR188152_1.fastq.gz 15ad7e6f24523c1700f14d873c8a77cb Geuvadis sequence mRNA NA12751 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188157/ERR188157_1.fastq.gz d0a1ebd276928667863a307fbb955873 Geuvadis sequence mRNA NA12872 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188415/ERR188415_1.fastq.gz d7469ab2593a2570904e087590ac9847 Geuvadis sequence mRNA NA12058 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188227/ERR188227_2.fastq.gz 018c28d20a2c8751fa8a66724546de17 Geuvadis sequence mRNA NA12874 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188415/ERR188415_2.fastq.gz 5e43d58d41e675ce6e8ab76effe0973f Geuvadis sequence mRNA NA12058 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188157/ERR188157_2.fastq.gz 8f3070bc6da336c9bb393e888218e89c Geuvadis sequence mRNA NA12872 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188227/ERR188227_1.fastq.gz f9844024eef19ac89444c31b9b741ce0 Geuvadis sequence mRNA NA12874 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188348/ERR188348_1.fastq.gz 91853f5e605d9f546e7a0bb059de4b58 Geuvadis sequence mRNA NA11995 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188348/ERR188348_2.fastq.gz 748101bd03d8238b8f48ba89ac5422e5 Geuvadis sequence mRNA NA11995 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188086/ERR188086_1.fastq.gz cd57b6eff79a733fde6dd8df91b22c31 Geuvadis sequence mRNA NA11892 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188086/ERR188086_2.fastq.gz 6555a12285bea311802d95d5d2e6fbb7 Geuvadis sequence mRNA NA11892 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188027/ERR188027_1.fastq.gz 963996a56c4c133ce5001e720f45bba6 Geuvadis sequence mRNA NA07056 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188446/ERR188446_1.fastq.gz 80d5608d2894b6de50088bbe714109c1 Geuvadis sequence mRNA NA12347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188027/ERR188027_2.fastq.gz d847fbd5ed441a15095cd157b213ec75 Geuvadis sequence mRNA NA07056 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188354/ERR188354_1.fastq.gz 10c1e489d36e6ae680dd36f9ea9176e4 Geuvadis sequence mRNA NA12775 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188371/ERR188371_2.fastq.gz b81c2f5f5d964bdd1dc66551cc91af78 Geuvadis sequence mRNA NA11920 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188446/ERR188446_2.fastq.gz 639f7944724fe8d8dfdf4971c799af4d Geuvadis sequence mRNA NA12347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188474/ERR188474_1.fastq.gz 5848652997ffa5f30a635df50a38d610 Geuvadis sequence mRNA NA07051 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188474/ERR188474_2.fastq.gz 43803cd1e086d9c26c811326b562bd81 Geuvadis sequence mRNA NA07051 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188354/ERR188354_2.fastq.gz 5c48d5e2d24c2149a06cc7531eb78f3c Geuvadis sequence mRNA NA12775 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188371/ERR188371_1.fastq.gz 3a5fcd80573da484c4c9da50f16c9342 Geuvadis sequence mRNA NA11920 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188101/ERR188101_2.fastq.gz 3a494bb72cd1852d6d57ab6fd54532bc Geuvadis sequence mRNA NA10847 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188396/ERR188396_1.fastq.gz 5d6e38b60de1d61571b62fdd0f333dbb Geuvadis sequence mRNA NA12383 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188134/ERR188134_2.fastq.gz 240662ddebfeb49fe012951a7353c097 Geuvadis sequence mRNA NA12827 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188134/ERR188134_1.fastq.gz 60790937bd703be43c2451297a39ec92 Geuvadis sequence mRNA NA12827 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188161/ERR188161_1.fastq.gz 34d52b21dcb6013a6b5a81f8fac9d6e0 Geuvadis sequence mRNA NA11918 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188047/ERR188047_2.fastq.gz 300a284ea239de84003a42788e38e5a2 Geuvadis sequence mRNA NA06994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188101/ERR188101_1.fastq.gz a78821bb0696b24c7dd21d6429e591ee Geuvadis sequence mRNA NA10847 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188396/ERR188396_2.fastq.gz e04f39722e3395768ef555e331f926ca Geuvadis sequence mRNA NA12383 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188256/ERR188256_2.fastq.gz 51bb1d211e22d04a5d58a218fa3fe305 Geuvadis sequence mRNA NA12777 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188161/ERR188161_2.fastq.gz 1ecaa86cfd01101426534d1384dd0602 Geuvadis sequence mRNA NA11918 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188420/ERR188420_2.fastq.gz c1474b359dbe628b5ed94085d7e60ee4 Geuvadis sequence mRNA NA12763 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188420/ERR188420_1.fastq.gz 638e240107a86761a5eb81b018b3cf84 Geuvadis sequence mRNA NA12763 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188256/ERR188256_1.fastq.gz 3ac69f1150affcf57c27818a82ac7a4f Geuvadis sequence mRNA NA12777 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188047/ERR188047_1.fastq.gz 1ee5141a6e25b157945146873c9dbf7e Geuvadis sequence mRNA NA06994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188233/ERR188233_2.fastq.gz 04ab904d9b2cbe86e66f40e1d00a0d09 Geuvadis sequence mRNA NA11993 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188441/ERR188441_1.fastq.gz f6dc37c702ed4c0c512663abafc3af2c Geuvadis sequence mRNA NA12348 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188233/ERR188233_1.fastq.gz 82c69891dd5d036f758d094285adc2d8 Geuvadis sequence mRNA NA11993 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188441/ERR188441_2.fastq.gz 28c898eeb35cb7089095a374ae5020e6 Geuvadis sequence mRNA NA12348 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188228/ERR188228_1.fastq.gz e8e9c0c4812bfe6b238bcc45f5456df6 Geuvadis sequence mRNA NA12829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188176/ERR188176_1.fastq.gz 0beed0123b6007eafe168b786ff09ef9 Geuvadis sequence mRNA NA07357 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188176/ERR188176_2.fastq.gz 5311161a57c9e3d6e28975948620d44c Geuvadis sequence mRNA NA07357 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188325/ERR188325_2.fastq.gz cbffa77f930a6f6e862e8248784e20ef Geuvadis sequence mRNA NA06984 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188228/ERR188228_2.fastq.gz cd1cc7b4521888218ace9dbc7222bc94 Geuvadis sequence mRNA NA12829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188325/ERR188325_1.fastq.gz 09fc197951e0b99aff4ae056245ac60f Geuvadis sequence mRNA NA06984 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188142/ERR188142_2.fastq.gz 2d7c53c7ba448969ab687f1d1306187b Geuvadis sequence mRNA NA12287 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188142/ERR188142_1.fastq.gz 3c6d4176b01d84f7ed6c6570091c0c08 Geuvadis sequence mRNA NA12287 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188246/ERR188246_2.fastq.gz 6e36dd80e7e5065f73548868867c56e5 Geuvadis sequence mRNA NA11840 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188291/ERR188291_1.fastq.gz c5412b09d25282de59ad3e0ca9512900 Geuvadis sequence mRNA NA12813 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188291/ERR188291_2.fastq.gz ba5b9e00305b46f3eddc8f5cad028576 Geuvadis sequence mRNA NA12813 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188051/ERR188051_2.fastq.gz 5c642900e59a8b03910c4635fbbe9b9e Geuvadis sequence mRNA NA12830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188246/ERR188246_1.fastq.gz 49a9f55e9dfa57e1518cb7deb03a5b61 Geuvadis sequence mRNA NA11840 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188051/ERR188051_1.fastq.gz 55e50a5fb76f94de39138597537d4448 Geuvadis sequence mRNA NA12830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188467/ERR188467_2.fastq.gz 5d9e4a339d6851587b51dd5fed48ba87 Geuvadis sequence mRNA NA12286 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188339/ERR188339_2.fastq.gz 28c7989f788a271850a5ac173d2d5ad4 Geuvadis sequence mRNA NA12815 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188092/ERR188092_1.fastq.gz 079f1175e8669165ea2bfe076c1ee1d6 Geuvadis sequence mRNA NA12546 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188177/ERR188177_1.fastq.gz 10b537ab077da8a18735d90dd1676b02 Geuvadis sequence mRNA NA12234 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188092/ERR188092_2.fastq.gz b93360358bb16d6d056b85aecce38739 Geuvadis sequence mRNA NA12546 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188467/ERR188467_1.fastq.gz 4eec47f9cb8e446bed32c153e56485d9 Geuvadis sequence mRNA NA12286 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188339/ERR188339_1.fastq.gz f930355862263588aed02c4ad75d2ca5 Geuvadis sequence mRNA NA12815 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188177/ERR188177_2.fastq.gz 38b5f9350ec3fded2a440b9aff73a294 Geuvadis sequence mRNA NA12234 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188099/ERR188099_2.fastq.gz 7e0f4acca70ec758ba4901cc0d03e5bd Geuvadis sequence mRNA NA12843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188235/ERR188235_1.fastq.gz 5c20636b19c4256ad67f3a313efd476f Geuvadis sequence mRNA NA11930 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188413/ERR188413_1.fastq.gz 381503472d529a371ce37d7f3fe5ffb7 Geuvadis sequence mRNA NA12890 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188235/ERR188235_2.fastq.gz 016e084716245a4b707650eeee77e75d Geuvadis sequence mRNA NA11930 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188331/ERR188331_1.fastq.gz e16891fb5fd255c197b5fed7c616080e Geuvadis sequence mRNA NA12155 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188067/ERR188067_2.fastq.gz 5bbaf2fad06369773469d9bea469d072 Geuvadis sequence mRNA NA11831 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188099/ERR188099_1.fastq.gz 67c4e7e628214fdfd687bacbdae53bcc Geuvadis sequence mRNA NA12843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188331/ERR188331_2.fastq.gz 5e884f307be8f33da205599208385a3d Geuvadis sequence mRNA NA12155 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188413/ERR188413_2.fastq.gz df84fb9a4f9b9d4658432fd5bad0b975 Geuvadis sequence mRNA NA12890 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188067/ERR188067_1.fastq.gz ed2ace39003aac881a1965257e2e5fbf Geuvadis sequence mRNA NA11831 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188431/ERR188431_2.fastq.gz b85a14206859a2fa1a460b4045b4b530 Geuvadis sequence mRNA NA12273 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188376/ERR188376_1.fastq.gz 9ba79675791bd77749e4714bd088fd27 Geuvadis sequence mRNA NA07037 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188431/ERR188431_1.fastq.gz 422d3e347df6941a58389eba62d94866 Geuvadis sequence mRNA NA12273 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188376/ERR188376_2.fastq.gz 42243cf46b51b8483599ed1d3c6e4d89 Geuvadis sequence mRNA NA07037 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188032/ERR188032_1.fastq.gz d87e91b75a4bb5a7b61582939d2f3aca Geuvadis sequence mRNA NA12275 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188388/ERR188388_1.fastq.gz bc50f7ced3c2ca81f940cc7fb6aecbb4 Geuvadis sequence mRNA NA12341 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188135/ERR188135_1.fastq.gz 84d773729eb354be947b9d29477e0263 Geuvadis sequence mRNA NA07346 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188388/ERR188388_2.fastq.gz a04d54f07a9f1340d2f1254f2195aa9b Geuvadis sequence mRNA NA12341 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188032/ERR188032_2.fastq.gz 453c03d8e06e87a30eab51ce7057043f Geuvadis sequence mRNA NA12275 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188062/ERR188062_1.fastq.gz 4c9649674e92f8895f57606f88a7eb83 Geuvadis sequence mRNA NA11992 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188062/ERR188062_2.fastq.gz 8985f57ab39a75f493a3a7a6150be601 Geuvadis sequence mRNA NA11992 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188349/ERR188349_2.fastq.gz ab7b527fde782fc3fc44eee596b3664c Geuvadis sequence mRNA NA12842 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188319/ERR188319_1.fastq.gz 0805009cc6c0ed3db08b0c286c10d93b Geuvadis sequence mRNA NA12249 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188319/ERR188319_2.fastq.gz 8b8ff87c7764d8dda4a25dd933fc667e Geuvadis sequence mRNA NA12249 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188135/ERR188135_2.fastq.gz 7324ec6d2781ec9adf28284083110152 Geuvadis sequence mRNA NA07346 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188279/ERR188279_1.fastq.gz d4303859359d50befb71dbaf467430d8 Geuvadis sequence mRNA NA12776 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188349/ERR188349_1.fastq.gz 2c16ac334cefe4e4d2cc63f35a069d01 Geuvadis sequence mRNA NA12842 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188279/ERR188279_2.fastq.gz 07c3d451b611eefce0c5e4041c8f499e Geuvadis sequence mRNA NA12776 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188172/ERR188172_1.fastq.gz ddfc7484a5c1e4ef671ace4eb5ecf8ff Geuvadis sequence mRNA NA12154 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188244/ERR188244_2.fastq.gz 4a2187dd71c35888e215dc1d93984cc6 Geuvadis sequence mRNA NA12718 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188244/ERR188244_1.fastq.gz 018897a35685ad86cdae1e47fbd9762a Geuvadis sequence mRNA NA12718 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188172/ERR188172_2.fastq.gz 0e0b653b03629c565561f77c418efa67 Geuvadis sequence mRNA NA12154 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188277/ERR188277_1.fastq.gz 0b322df2565dda1d914000d643d05af1 Geuvadis sequence mRNA NA12340 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188277/ERR188277_2.fastq.gz 2ed020e7e5bee8675e4208b4e72f0497 Geuvadis sequence mRNA NA12340 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md diff --git a/GLIMMPS_pipline/data_download_process/fastqDownloader.sh b/GLIMMPS_pipline/data_download_process/fastqDownloader.sh deleted file mode 100644 index e604cbb..0000000 --- a/GLIMMPS_pipline/data_download_process/fastqDownloader.sh +++ /dev/null @@ -1,32 +0,0 @@ -#!/bin/bash -## Author: Yungang Xu (yungang.xu@hotmail.com) -## Batch download Geuvadis fastq files -##-----------Arguments---------- -## $1 the metadata (sample list) downloaded from http://www.internationalgenome.org/data-portal/data-collection/geuvadis -## remove the header line before use it -## $2 a number indicating the parallel threads for multiple downloading simultaneously. Based on my experience, -## the above server could afford upto 70 threads, otherwise will get some download failed because of the connection traffic. -##----------USAGE---------- -## [qsub -cwd -l h_vmem=120G,m_mem_free=60G -M xuy5@email.chop.edu -m bea] fastqDownloader.sh igsr_Geuvadis.tsv.tsv 20 - -download () { - url=$1 # the ftp url - indi=$6 # the individual ID, same with vcf file - pop=$7 # population ID - mkdir -p $pop # group data based on their population ID - fqid=$(basename $url) # get the fqid, i.e. 1.fastq.gz or 2.fastq.gz - wget -c $url -O ${pop}/${indi}_${fqid} - echo $@ Done >> download.${pop}.log -} -a=0 -while read -r line -do -if [ $a -lt $2 ] -then - download $line & - a=`expr $a + 1` -else - download $line - a=0 -fi -done < $1 diff --git a/GLIMMPS_pipline/data_download_process/igsr_Geuvadis.tsv.tsv b/GLIMMPS_pipline/data_download_process/igsr_Geuvadis.tsv.tsv deleted file mode 100644 index 9a34259..0000000 --- a/GLIMMPS_pipline/data_download_process/igsr_Geuvadis.tsv.tsv +++ /dev/null @@ -1,1336 +0,0 @@ -url md5 Data collection Data type Analysis group Sample Population Data reuse policy -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204994/ERR204994_2.fastq.gz 5920d2f97997eb5171393419c0886e55 Geuvadis sequence mRNA NA19119 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204828/ERR204828_1.fastq.gz b575943a3419992b1bbf7f9cb6203405 Geuvadis sequence mRNA NA19129 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204936/ERR204936_1.fastq.gz 6b2dc66277424e332e67871d837f1157 Geuvadis sequence mRNA HG00105 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204828/ERR204828_2.fastq.gz a8d4bd2717ac3af3e8f33f2f19fefcd3 Geuvadis sequence mRNA NA19129 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204849/ERR204849_2.fastq.gz 6fb039cf932ec04c74b57c639a70946c Geuvadis sequence mRNA NA19107 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204934/ERR204934_2.fastq.gz 0745058b2cdbef7bb38ee5b659d89e66 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204854/ERR204854_1.fastq.gz 49695b115d77459f9f20338c54ce4229 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204994/ERR204994_1.fastq.gz 38516b7a17efeb3d9f713072b2c558c6 Geuvadis sequence mRNA NA19119 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204839/ERR204839_2.fastq.gz fa12be137cdb5e9dbd784d342c43b48c Geuvadis sequence mRNA NA12761 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204936/ERR204936_2.fastq.gz 4c96c8f8dac635c3f3738aecec89fb05 Geuvadis sequence mRNA HG00105 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204835/ERR204835_2.fastq.gz c546e88ce935cc6bba5b47151e7055d4 Geuvadis sequence mRNA NA18517 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204913/ERR204913_1.fastq.gz 4e6de0633aba87e82c7c377745f626c3 Geuvadis sequence mRNA NA19143 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204913/ERR204913_2.fastq.gz 95127e801c533f506542bffc87458514 Geuvadis sequence mRNA NA19143 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204849/ERR204849_1.fastq.gz b51f69cb97f4a1a37293134c26f4264d Geuvadis sequence mRNA NA19107 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204845/ERR204845_2.fastq.gz cebe6aa3e1ad563ecf8478511b97ee23 Geuvadis sequence mRNA NA19152 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204841/ERR204841_1.fastq.gz 0dffd16fa6769e0c7f6b9b80da90dcbd Geuvadis sequence mRNA NA11994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204865/ERR204865_2.fastq.gz 696995a627224a1adcb1fe70e03f2f29 Geuvadis sequence mRNA HG00313 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204839/ERR204839_1.fastq.gz 621f5134b59f73e048c0e46ebe4d2747 Geuvadis sequence mRNA NA12761 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204835/ERR204835_1.fastq.gz 4eea67366d71587c9d56f31579decfc4 Geuvadis sequence mRNA NA18517 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204877/ERR204877_2.fastq.gz d1065691067b37bc093568362e392d15 Geuvadis sequence mRNA NA18910 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204990/ERR204990_1.fastq.gz 7518d36a0164d62bf935c4c5a083dd5b Geuvadis sequence mRNA NA07037 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204990/ERR204990_2.fastq.gz b9246fe27c299e7c03d9629b1006d58a Geuvadis sequence mRNA NA07037 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204934/ERR204934_1.fastq.gz 73cdb08d5f0dc8ad9a3d510d83906867 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204966/ERR204966_1.fastq.gz a75f373eaa9c1be2dbf74ed836dda069 Geuvadis sequence mRNA NA19200 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205019/ERR205019_1.fastq.gz 4a5e65db398ebdc27e93a0de32d2df49 Geuvadis sequence mRNA NA18502 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204854/ERR204854_2.fastq.gz 21436b11c722cf77e8343170ac123a31 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204960/ERR204960_2.fastq.gz a09423f44362ec59a3e128935429d7a7 Geuvadis sequence mRNA NA07048 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204865/ERR204865_1.fastq.gz 116057d4c93d2c75bf50499215cf44cf Geuvadis sequence mRNA HG00313 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204845/ERR204845_1.fastq.gz 07c2041bc3eff6c23684eb0a3fa7d3b0 Geuvadis sequence mRNA NA19152 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204970/ERR204970_1.fastq.gz 6d347d77a8798fc422881907c05ec6e4 Geuvadis sequence mRNA NA19222 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205008/ERR205008_1.fastq.gz 4a076d9be5382b075c5bf627d009b099 Geuvadis sequence mRNA NA20543 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205008/ERR205008_2.fastq.gz 3c9b83cb8983927c6c127600f4095c68 Geuvadis sequence mRNA NA20543 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204841/ERR204841_2.fastq.gz b2a5fbd2b3afe5348b7603990f3291d4 Geuvadis sequence mRNA NA11994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204877/ERR204877_1.fastq.gz a29b09927164c04379564ea043e08502 Geuvadis sequence mRNA NA18910 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204977/ERR204977_1.fastq.gz 5c82ea04735e7d287e25d5dbcd061bc3 Geuvadis sequence mRNA NA12775 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204978/ERR204978_2.fastq.gz b8b1b89a9f96d614ba86725b4a406472 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204940/ERR204940_2.fastq.gz 9ee3af0668069f00fafa7f8abf7dbcec Geuvadis sequence mRNA NA18861 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204960/ERR204960_1.fastq.gz 7c002de170e6aa3b1f915835f6d7d7c4 Geuvadis sequence mRNA NA07048 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205009/ERR205009_1.fastq.gz 860f6c5840c406c10dca9590f8e90899 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205002/ERR205002_1.fastq.gz b79d511f6fd7e3028b68c1c5a7390ef4 Geuvadis sequence mRNA HG00134 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204978/ERR204978.fastq.gz 8ec04ffa4d5a7a863465fbd1f2ea85e0 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204978/ERR204978_1.fastq.gz 6f7a8a72f8b376dac74e29bb20711303 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204966/ERR204966_2.fastq.gz 3883b70ceec1fc65eb17c8175ef76d03 Geuvadis sequence mRNA NA19200 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204884/ERR204884_1.fastq.gz cbad3bcba383d2e80b48e37e3d3be4c7 Geuvadis sequence mRNA HG00138 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204963/ERR204963_1.fastq.gz b66f2ff4ec5adc87c942c531fdd98e6b Geuvadis sequence mRNA NA18868 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205019/ERR205019_2.fastq.gz 1f5316e4eda2496ed43dcd957ccc47de Geuvadis sequence mRNA NA18502 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204837/ERR204837_1.fastq.gz c776a658bd2971cf490c0dac253b2a96 Geuvadis sequence mRNA NA19138 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204940/ERR204940_1.fastq.gz 74984cab81224bbe550ead0591464123 Geuvadis sequence mRNA NA18861 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204970/ERR204970_2.fastq.gz 33bf052587eeda52fa8202aeb23c410a Geuvadis sequence mRNA NA19222 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204981/ERR204981_2.fastq.gz 2041e4937eade3fa13c68de684524621 Geuvadis sequence mRNA NA19160 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204959/ERR204959_1.fastq.gz 5970abf775db7bd3395b84b229a732c4 Geuvadis sequence mRNA NA19206 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204959/ERR204959_2.fastq.gz eb4a6404c9d4d4055f8c4c8ebe65e104 Geuvadis sequence mRNA NA19206 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204837/ERR204837_2.fastq.gz 1da17e5292f78d13a50a6a18d8eadbce Geuvadis sequence mRNA NA19138 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204887/ERR204887_1.fastq.gz 7a2faabddaa88609f69e13ac000312a9 Geuvadis sequence mRNA HG00111 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204920/ERR204920_1.fastq.gz f3f49cea34a25b0ebe9ee9f8c078c29e Geuvadis sequence mRNA HG00119 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204977/ERR204977_2.fastq.gz bd1369ee8ee505055cce17d5242b2858 Geuvadis sequence mRNA NA12775 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204861/ERR204861_1.fastq.gz 05f10e83fbc38d84101889c31b5d767a Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205009/ERR205009_2.fastq.gz b24a680e56a430bee0369b1f49255c2a Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204963/ERR204963_2.fastq.gz c28e437b589439446c5b53483caa6097 Geuvadis sequence mRNA NA18868 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204958/ERR204958_1.fastq.gz f471cd0c967870b41d4e50305a79ff1d Geuvadis sequence mRNA NA07051 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205002/ERR205002_2.fastq.gz 9bd90d48f5dc8c9f4087c21aa3119e2c Geuvadis sequence mRNA HG00134 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204848/ERR204848_1.fastq.gz 9dcffced13cf943d1ccfa78ebe8a9e80 Geuvadis sequence mRNA NA11832 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204884/ERR204884_2.fastq.gz 94475913a462692d51b150e91882ebee Geuvadis sequence mRNA HG00138 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204987/ERR204987_2.fastq.gz c8abfb5d15e19462b3e48f2690f91172 Geuvadis sequence mRNA NA19130 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204904/ERR204904_2.fastq.gz eeb97833b2b8d1052d5d9268eb50d208 Geuvadis sequence mRNA NA19189 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204848/ERR204848_2.fastq.gz 05ca848db65726e8e39137bc8a27c5f2 Geuvadis sequence mRNA NA11832 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204922/ERR204922_2.fastq.gz 4cc94d0b1e86c3a8385785f60ac48cab Geuvadis sequence mRNA NA19131 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204861/ERR204861_2.fastq.gz 4595c203a39d84130d61a84781056e60 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204920/ERR204920_2.fastq.gz fecfeea2e4536ce3f7775ab217d9d7df Geuvadis sequence mRNA HG00119 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204929/ERR204929_1.fastq.gz a680b45ee38da20b5179901d1624bc34 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204981/ERR204981_1.fastq.gz c94994ed7a339748ec8c1071df69d061 Geuvadis sequence mRNA NA19160 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204946/ERR204946_2.fastq.gz a1b6215a0244aa9d18844b1ea22653a5 Geuvadis sequence mRNA NA12287 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204887/ERR204887_2.fastq.gz e17c848c05d2096c810526984e5c64ff Geuvadis sequence mRNA HG00111 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204958/ERR204958_2.fastq.gz 44747d418d8821c0327e8d5434313324 Geuvadis sequence mRNA NA07051 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204851/ERR204851_2.fastq.gz 2c5df6f0d5b3a9b593a449c81615f37b Geuvadis sequence mRNA NA18912 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204875/ERR204875_2.fastq.gz f73addba06927aba06a0b080b97546f6 Geuvadis sequence mRNA NA12546 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204875/ERR204875_1.fastq.gz 4df71fce5811a0ef69766636068ca326 Geuvadis sequence mRNA NA12546 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204922/ERR204922_1.fastq.gz d635acfebc1ced2122a35df7198bbd61 Geuvadis sequence mRNA NA19131 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204883/ERR204883_2.fastq.gz 7ef1a7fb16a72d06a9fe6cadc0728aad Geuvadis sequence mRNA NA12286 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204890/ERR204890_1.fastq.gz 4b5017d731032a7a7dab70e0048ef009 Geuvadis sequence mRNA NA20773 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204904/ERR204904_1.fastq.gz 120f53822e42b87903cd29df0af0165a Geuvadis sequence mRNA NA19189 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204827/ERR204827_1.fastq.gz 3424c2d2519d7554c0f2614227b9b8ad Geuvadis sequence mRNA HG00183 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204946/ERR204946_1.fastq.gz b6fb83e933282c722f7ef312f471d06f Geuvadis sequence mRNA NA12287 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204929/ERR204929_2.fastq.gz 096b1c478a9773376acb795b1974e5c8 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204894/ERR204894_1.fastq.gz 333d034fbfd7a67d49a41c11fb2c33fb Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204895/ERR204895_2.fastq.gz 15f348b0fc3838e6357d36ced8d624f7 Geuvadis sequence mRNA NA12272 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204895/ERR204895_1.fastq.gz 25865720ae4ffdc908bc5f1362b7e36e Geuvadis sequence mRNA NA12272 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204987/ERR204987_1.fastq.gz af4abbc871543d358737c790fd0a96be Geuvadis sequence mRNA NA19130 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204843/ERR204843_1.fastq.gz 96c8ca07d1a27e14749dd46a7a0bf386 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205015/ERR205015_2.fastq.gz 7e338bc9f968d7f8efb0ca0add3e00e4 Geuvadis sequence mRNA HG00325 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204993/ERR204993_2.fastq.gz 7c4ce1260b1ab33154a5c1bfd21e0b18 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204993/ERR204993_1.fastq.gz 021e89a1e26f64e6152864d1a7d14573 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204827/ERR204827_2.fastq.gz 7a35a93e2dcdf3aef7119431534f45df Geuvadis sequence mRNA HG00183 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204928/ERR204928_2.fastq.gz 6e5589194509f59f44a3cac95ce02cc2 Geuvadis sequence mRNA NA06994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204984/ERR204984_2.fastq.gz 5f165326d2306b1d540da21698dde3f8 Geuvadis sequence mRNA HG00133 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204851/ERR204851_1.fastq.gz 271339f7472f5db050b51a5ac554acb2 Geuvadis sequence mRNA NA18912 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204868/ERR204868_2.fastq.gz ee81db48a03faa1be780eb76a77a443f Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204883/ERR204883_1.fastq.gz 1f7d54c6c4462b972a7671e489d87fd9 Geuvadis sequence mRNA NA12286 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204890/ERR204890_2.fastq.gz dc2a5726d50828a24d6cd7e8d61a9b59 Geuvadis sequence mRNA NA20773 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204888/ERR204888_2.fastq.gz 98d07a7ee184f4c27323522d369902c2 Geuvadis sequence mRNA NA18934 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204989/ERR204989_2.fastq.gz 9685d5e83e36de085464c4495f01d37a Geuvadis sequence mRNA NA19150 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204989/ERR204989_1.fastq.gz 99efad25aa9191f46e61e35a63b47697 Geuvadis sequence mRNA NA19150 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204868/ERR204868_1.fastq.gz ff54a4f1211c16ae58228afdc495c99d Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204944/ERR204944_2.fastq.gz 3a0549a538057f76ac7b56806ee85969 Geuvadis sequence mRNA NA12340 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204985/ERR204985_1.fastq.gz 3e42aee3bc192b0139cda0e8144b0bfe Geuvadis sequence mRNA NA19144 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204894/ERR204894_2.fastq.gz da370a771d00e91f38224307c8bcd852 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204889/ERR204889_1.fastq.gz 34c682873a4e25c393dbe43f5aa346fa Geuvadis sequence mRNA NA18923 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204843/ERR204843_2.fastq.gz 20464a399a5dc416eee22b4e37b1cb25 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204984/ERR204984_1.fastq.gz 6c0198b7e3987855e90e07ec8eca0c22 Geuvadis sequence mRNA HG00133 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204930/ERR204930_2.fastq.gz 381fcccad8e99ec4457f692915e660d3 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205015/ERR205015_1.fastq.gz 972dcf5ee17d0cf7f19ef269b794dd4c Geuvadis sequence mRNA HG00325 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205020/ERR205020_1.fastq.gz c6dc142e82512954bb8cd5eb286167eb Geuvadis sequence mRNA NA19198 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204928/ERR204928_1.fastq.gz 4f5c06e0a24caf02e482ccda1a62fa5f Geuvadis sequence mRNA NA06994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204915/ERR204915_2.fastq.gz 576c18510448e70865dd188fb4e09baa Geuvadis sequence mRNA NA12413 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204942/ERR204942_2.fastq.gz 3aba81a7570460fc01c7d3849c6de476 Geuvadis sequence mRNA NA18908 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205020/ERR205020_2.fastq.gz 852523d26666b1a03d52d425916d2f64 Geuvadis sequence mRNA NA19198 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204823/ERR204823_1.fastq.gz 2a251117621cb0d3cf34f7427117edc1 Geuvadis sequence mRNA HG00109 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204889/ERR204889_2.fastq.gz df4f4aa8577425da5ab202ee92184b46 Geuvadis sequence mRNA NA18923 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204888/ERR204888_1.fastq.gz 7cbb8e5a32f9a4732f8f4ed88b66acee Geuvadis sequence mRNA NA18934 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204996/ERR204996_2.fastq.gz a3c946d40a9914fb8a6356c8e04e087c Geuvadis sequence mRNA NA18511 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204873/ERR204873_1.fastq.gz 1e41180e1dc170899cc0882f51c4892a Geuvadis sequence mRNA NA20754 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204873/ERR204873_2.fastq.gz 968ed1177dd73f7ff5eec326219f2bd2 Geuvadis sequence mRNA NA20754 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204944/ERR204944_1.fastq.gz 594da74474ba1fd4ad7c2d844258d06e Geuvadis sequence mRNA NA12340 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204910/ERR204910_1.fastq.gz 3dcea38e73d0cd7941d06f9bf5d48302 Geuvadis sequence mRNA NA12829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204938/ERR204938_2.fastq.gz 27b4b8f62089832cb05aea6d7d1f0e0e Geuvadis sequence mRNA NA19257 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204985/ERR204985_2.fastq.gz a5116d3725e9ad6f2d798c6cf1a36a0f Geuvadis sequence mRNA NA19144 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205016/ERR205016_1.fastq.gz c81ca1e10b726c30666cb98839971d03 Geuvadis sequence mRNA HG00237 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204823/ERR204823_2.fastq.gz d25bfd93990a252d722101154192fa7f Geuvadis sequence mRNA HG00109 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204942/ERR204942_1.fastq.gz 2d63933aebdea65180c9cb356f09860a Geuvadis sequence mRNA NA18908 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204886/ERR204886_1.fastq.gz 9a896b6c666b7f463ddc00f9e13d04dc Geuvadis sequence mRNA NA07357 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204930/ERR204930_1.fastq.gz 7e3349d60583ac569ad2fa9e703079da Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205001/ERR205001_2.fastq.gz 2aff4ebd1ff84ff107a28c88b8b6ebb1 Geuvadis sequence mRNA NA11992 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204915/ERR204915_1.fastq.gz ff16f02c242534b2f059f28956d8208e Geuvadis sequence mRNA NA12413 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204838/ERR204838_2.fastq.gz 0e596f94b65c2a8314008e82cfb06f05 Geuvadis sequence mRNA HG00377 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204836/ERR204836_2.fastq.gz a4a83a58adeab52ed2f51e514bce1920 Geuvadis sequence mRNA NA12763 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205001/ERR205001_1.fastq.gz 159ad41dc8ce1f31ad410ba7ed9fb66e Geuvadis sequence mRNA NA11992 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205004/ERR205004_2.fastq.gz 89b41f8196d2a95af041fad522f30632 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205016/ERR205016_2.fastq.gz d2f1aa94faf39ba00880e807b8b4bfb7 Geuvadis sequence mRNA HG00237 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204938/ERR204938_1.fastq.gz eb0541e80bb75d7a14557186871e5940 Geuvadis sequence mRNA NA19257 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204856/ERR204856_1.fastq.gz de1fb3872cf78492f46c99873758054b Geuvadis sequence mRNA NA12275 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204996/ERR204996_1.fastq.gz dd6d29ac417f2aacbe81bb88652bc475 Geuvadis sequence mRNA NA18511 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204961/ERR204961_2.fastq.gz 5dd0b714588ad60cec79dc050f998117 Geuvadis sequence mRNA NA18488 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204910/ERR204910_2.fastq.gz dfbf7e150a53681dca5846282d318ca7 Geuvadis sequence mRNA NA12829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204886/ERR204886_2.fastq.gz a9567017ffb1a02603806b5517d2bcd0 Geuvadis sequence mRNA NA07357 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204925/ERR204925_2.fastq.gz 5a3c89659758044654ff346a2be909d0 Geuvadis sequence mRNA NA18498 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204948/ERR204948_2.fastq.gz 2178bf8441292cfede4ec0138886bbc6 Geuvadis sequence mRNA NA19172 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204948/ERR204948_1.fastq.gz d293f3a1c37b707be14d4611aba99672 Geuvadis sequence mRNA NA19172 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205004/ERR205004_1.fastq.gz 2ff22ca18845b86f5b89dbbd83d69ff0 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204974/ERR204974_1.fastq.gz e9294a59d7c7582059e51ccc188948a2 Geuvadis sequence mRNA NA12234 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204846/ERR204846_2.fastq.gz 0edcac7aa913dac3ee2c0ac1779ab880 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204836/ERR204836_1.fastq.gz 1575b39fc8b55722e2f228f68445b28d Geuvadis sequence mRNA NA12763 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204939/ERR204939_2.fastq.gz ab7ccee33b766093e8cf23ad634aab65 Geuvadis sequence mRNA NA12155 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204961/ERR204961_1.fastq.gz 9c789a95e80de0e5fb29728dd141ce57 Geuvadis sequence mRNA NA18488 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204856/ERR204856_2.fastq.gz 52723eacd1fe8f60bb7d7ffd9285820c Geuvadis sequence mRNA NA12275 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205007/ERR205007_2.fastq.gz ec1667dc77d5d5027a5bc9f983eed2b2 Geuvadis sequence mRNA NA19146 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204829/ERR204829_2.fastq.gz 369a453ce0f4dac639e731c1e417005c Geuvadis sequence mRNA NA19207 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204829/ERR204829_1.fastq.gz a94aa6b680886d8158b18f57646bce40 Geuvadis sequence mRNA NA19207 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204838/ERR204838_1.fastq.gz 67bfae900c2e3b3946909d8701e4d0f5 Geuvadis sequence mRNA HG00377 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204947/ERR204947_2.fastq.gz cf6cc9823ced28691d791bac6e9efd9c Geuvadis sequence mRNA HG00137 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204933/ERR204933_2.fastq.gz 3d603ecd89dcbffb3854fb3750eda77c Geuvadis sequence mRNA NA19256 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204916/ERR204916_1.fastq.gz ef21667e5eb4c8e73f1b20fea44ae09c Geuvadis sequence mRNA NA19225 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204916/ERR204916_2.fastq.gz 46e2b63a2a5a2ee6e0eb6353723c74ff Geuvadis sequence mRNA NA19225 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204939/ERR204939_1.fastq.gz fab339c70b8088e28f6ed1908db7141f Geuvadis sequence mRNA NA12155 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204859/ERR204859_1.fastq.gz db96ab805b1a767ff51c3c346912b06b Geuvadis sequence mRNA NA18486 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204821/ERR204821_1.fastq.gz b2e824822e2a82fe753c903bf1ba8b05 Geuvadis sequence mRNA NA19159 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204925/ERR204925_1.fastq.gz 0b6f77c7fdf0c82f871000fbe7d38ba9 Geuvadis sequence mRNA NA18498 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204962/ERR204962_2.fastq.gz 3293c7bd71a1c3ec3fa2eba2d585f80b Geuvadis sequence mRNA NA12813 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204974/ERR204974_2.fastq.gz 9956996b6c57aefc3dddf1bd893f7c4f Geuvadis sequence mRNA NA12234 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204846/ERR204846_1.fastq.gz ed8cccb032b71ac83708e2f7d32155f2 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204864/ERR204864_1.fastq.gz bb66f41c4421c3fec9bfae1134e58843 Geuvadis sequence mRNA HG00321 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204866/ERR204866_1.fastq.gz a472f78777af91a15c4a6e8fef983779 Geuvadis sequence mRNA NA19197 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204866/ERR204866_2.fastq.gz 2587b75e79d9e6724e055a941559f0b1 Geuvadis sequence mRNA NA19197 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204962/ERR204962_1.fastq.gz 6d7646af16fd62e1b691a8ee2277ba14 Geuvadis sequence mRNA NA12813 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204927/ERR204927_1.fastq.gz 3b0f82bfa6ed0bffa809d977497fd049 Geuvadis sequence mRNA NA12814 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204926/ERR204926_2.fastq.gz a383778693f21e883ef07ebfa68600f5 Geuvadis sequence mRNA NA10851 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205007/ERR205007_1.fastq.gz 967c4ec84afd195916a2e83ec9df9629 Geuvadis sequence mRNA NA19146 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204950/ERR204950_1.fastq.gz 08a2bbe90fc0a186586c32dc641ebd48 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204947/ERR204947_1.fastq.gz eef8f03236f1c78aa957dbaad9f8c256 Geuvadis sequence mRNA HG00137 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204821/ERR204821_2.fastq.gz 0f4fd7727fcbfc14d6378fed6711820a Geuvadis sequence mRNA NA19159 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204918/ERR204918_1.fastq.gz 26a033c595ff5c235ae34556b481b1c9 Geuvadis sequence mRNA NA20513 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204933/ERR204933_1.fastq.gz 19772179d5934e84125bd4740b6d52f1 Geuvadis sequence mRNA NA19256 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204988/ERR204988_1.fastq.gz a328d135ae3564ca304f834dd6ed7d56 Geuvadis sequence mRNA NA19175 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204859/ERR204859_2.fastq.gz dd03e3e86f33db0635883f262b535278 Geuvadis sequence mRNA NA18486 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204967/ERR204967_2.fastq.gz 328687c97a1d3413baf1a15bcfad62de Geuvadis sequence mRNA NA11893 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204855/ERR204855_1.fastq.gz e56f0926f553a7a060a25e7f67f49fd8 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204988/ERR204988_2.fastq.gz f30b285904f11b9feaf15308d4635157 Geuvadis sequence mRNA NA19175 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205012/ERR205012_2.fastq.gz 8744fc4c6b9a1c389553ac99042616d0 Geuvadis sequence mRNA NA20786 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204950/ERR204950_2.fastq.gz 112dad78c075650e3aa53dfb5b1f5b81 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204926/ERR204926_1.fastq.gz 0de924d51dcab96ef889d4489e19495a Geuvadis sequence mRNA NA10851 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204900/ERR204900_2.fastq.gz aae44bd3bff4936f8b4cf54a3e86a155 Geuvadis sequence mRNA NA11829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204864/ERR204864_2.fastq.gz 14f4c35072dea197787acd1672dbd41a Geuvadis sequence mRNA HG00321 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204862/ERR204862_1.fastq.gz fdfe7013ef5559c31873ef85f29b7779 Geuvadis sequence mRNA NA20771 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204927/ERR204927_2.fastq.gz 53cc508c235e55b68a497dad584a05ba Geuvadis sequence mRNA NA12814 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204918/ERR204918_2.fastq.gz 8ab6087d4f64dcf7f295b05ee148a1eb Geuvadis sequence mRNA NA20513 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204992/ERR204992_1.fastq.gz b4ad46bb94f8f66cd193645325598685 Geuvadis sequence mRNA NA11830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204937/ERR204937_1.fastq.gz 6cd17c6f992418df762666c84ea453b3 Geuvadis sequence mRNA NA20512 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204937/ERR204937_2.fastq.gz de1a011af97ea5e700638e645d6356bc Geuvadis sequence mRNA NA20512 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205012/ERR205012_1.fastq.gz f4a51d3d1caac877e53470e6a5a2a823 Geuvadis sequence mRNA NA20786 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204995/ERR204995_2.fastq.gz f6d6620154db1dd2ea2880c20f34aaa3 Geuvadis sequence mRNA NA19236 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205013/ERR205013_2.fastq.gz 2b28db6aed3af32bc2880cbe96ffa5f8 Geuvadis sequence mRNA NA18858 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204855/ERR204855_2.fastq.gz 347d0a4ba3f7c634533536374d233314 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204921/ERR204921_1.fastq.gz a8d9a065cb6ba69968d9ab2c0a75605a Geuvadis sequence mRNA NA11894 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204862/ERR204862_2.fastq.gz db959810e2968d3c05c131f47a2b0fdc Geuvadis sequence mRNA NA20771 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204900/ERR204900_1.fastq.gz 0d43db1cf4f40ee7b868ea661b69f7b1 Geuvadis sequence mRNA NA11829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204879/ERR204879_1.fastq.gz 41da4a37daa3443702db6dfe3ac78784 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204822/ERR204822_2.fastq.gz 173e0a45b69d7fcd838e0ba356fd5906 Geuvadis sequence mRNA NA12889 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204822/ERR204822_1.fastq.gz 96e6a2f1936e5af16da37bfa340cd161 Geuvadis sequence mRNA NA12889 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204967/ERR204967_1.fastq.gz ad514c9e497150864d63d9bfd3d131e4 Geuvadis sequence mRNA NA11893 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204863/ERR204863_2.fastq.gz 2c37d7131a4c805ef7a7706470180deb Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205006/ERR205006_1.fastq.gz 7402bcf74b5d2fb473b090b0eef5a275 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204831/ERR204831_1.fastq.gz 800cdbe8c2e99bd25f46757b6e203ed2 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204831/ERR204831_2.fastq.gz 8c058ab5735af88e34386963c4603677 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204921/ERR204921_2.fastq.gz d2d99723c3ef8ed44973ee1046374e79 Geuvadis sequence mRNA NA11894 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205013/ERR205013_1.fastq.gz 67b7954e8094f2f484d874362915c3f7 Geuvadis sequence mRNA NA18858 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204892/ERR204892_2.fastq.gz 9fbe0afaf1da841a553896064045e9fc Geuvadis sequence mRNA NA19121 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204992/ERR204992_2.fastq.gz 5c5a49c932e7a6798e1083b7de75333f Geuvadis sequence mRNA NA11830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204899/ERR204899_1.fastq.gz 60bb52756ba338f9de9b42ff7c1522a8 Geuvadis sequence mRNA NA12716 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204995/ERR204995_1.fastq.gz 046a79edcda9db52b39f5bfef9db0019 Geuvadis sequence mRNA NA19236 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205003/ERR205003_2.fastq.gz f2d69fa430b0442337bb0e958895d36b Geuvadis sequence mRNA NA12058 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204860/ERR204860_1.fastq.gz 01bcb8f1857457bbee1da1a5800304ab Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204879/ERR204879_2.fastq.gz 901630e16bb240e74cae57f8151cafff Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204969/ERR204969_2.fastq.gz a50faf4a23889f30f1917a00a759906a Geuvadis sequence mRNA NA19096 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204899/ERR204899_2.fastq.gz ed0fe46ceeb6a18429cbbdd666d61f64 Geuvadis sequence mRNA NA12716 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205006/ERR205006_2.fastq.gz a8350628ab305e193fcaefc48f9410af Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204924/ERR204924_2.fastq.gz bc0db869f436606b2e896c96175be8c7 Geuvadis sequence mRNA NA12045 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204998/ERR204998_2.fastq.gz adbec6c7297c61bdd55d9f84b06917d3 Geuvadis sequence mRNA HG00328 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204998/ERR204998_1.fastq.gz 4361669beff1d4d2d5d37bad9c18ce51 Geuvadis sequence mRNA HG00328 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204863/ERR204863_1.fastq.gz c9bdca1c24a5541bcbc1f5e3c7db850e Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204885/ERR204885_1.fastq.gz d770f981e60324dab69c363c9dd59ff5 Geuvadis sequence mRNA NA11840 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205022/ERR205022_2.fastq.gz 0847eee57a022cd31ce2aaacf64f1e60 Geuvadis sequence mRNA NA12156 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204891/ERR204891_2.fastq.gz 71914b5466ecea35735e0cea09cb9a03 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204891/ERR204891_1.fastq.gz 893c58985eb4573f0c04865364851403 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204969/ERR204969_1.fastq.gz de51a67f08b21e00e9aec034ac7e0fe8 Geuvadis sequence mRNA NA19096 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204968/ERR204968_2.fastq.gz f89097d78b1b2745cb01dd38f04354df Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204954/ERR204954_1.fastq.gz 9e8fb2e1f66e96272a5e9b095594f5c8 Geuvadis sequence mRNA NA20765 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204892/ERR204892_1.fastq.gz b6ac7a7c8b624f4cbaf9fae98f70ffaa Geuvadis sequence mRNA NA19121 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204850/ERR204850_1.fastq.gz 18513fb8f0adc5af8d60171e41461d1f Geuvadis sequence mRNA NA20518 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205003/ERR205003_1.fastq.gz 671054a324c8defc66ae1bbb4273f336 Geuvadis sequence mRNA NA12058 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204860/ERR204860_2.fastq.gz d8b8463b38a872c167754ad218af7229 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204953/ERR204953_1.fastq.gz 13e5569ad069aca13552c573c10b8d60 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204853/ERR204853_1.fastq.gz 578a2b578740ed8e2ba365568f5eaab8 Geuvadis sequence mRNA NA07347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204853/ERR204853_2.fastq.gz 60c8bf4cc8747a8eea17c97a21d387ab Geuvadis sequence mRNA NA07347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204850/ERR204850_2.fastq.gz 06f050923e12a3d7251e815a40c5da4e Geuvadis sequence mRNA NA20518 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204964/ERR204964_2.fastq.gz a94c1d24a4149df4d373a70c201bb9dd Geuvadis sequence mRNA NA12348 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205017/ERR205017_1.fastq.gz 4adbfe7e628738243757df10389502f7 Geuvadis sequence mRNA NA18870 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204924/ERR204924_1.fastq.gz dfe813b74f07e6a7529ea7c83726ebed Geuvadis sequence mRNA NA12045 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204898/ERR204898_1.fastq.gz 321e78c07e92ae7c0d717cf38a562ea1 Geuvadis sequence mRNA NA12776 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204885/ERR204885_2.fastq.gz 54760c9589e1cd05c630163c0d26ac2b Geuvadis sequence mRNA NA11840 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204954/ERR204954_2.fastq.gz 5f3782bd32468d9a00b3d2b99ed04812 Geuvadis sequence mRNA NA20765 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204971/ERR204971_1.fastq.gz 2e921f1a6b42ab5492bb4f0d45448107 Geuvadis sequence mRNA NA19185 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205022/ERR205022_1.fastq.gz caf2f956b7d0ab9a9778f2cb13c73aa1 Geuvadis sequence mRNA NA12156 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204912/ERR204912_2.fastq.gz 76d622f26060341b2d28594c1b33bb69 Geuvadis sequence mRNA NA19099 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204968/ERR204968_1.fastq.gz ed12f65491f239e9a28d84f99d1f34e5 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204943/ERR204943_2.fastq.gz 9a2da452e40b010f57b0d9978a8f47c9 Geuvadis sequence mRNA NA12750 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204975/ERR204975_1.fastq.gz 1f00c6a09e42676dc0f006e2a8a119c1 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204912/ERR204912_1.fastq.gz a473fd556b58976cad973dac0d6a272a Geuvadis sequence mRNA NA19099 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204983/ERR204983_1.fastq.gz 83ffef276d7e426ff4acd4c5d6642747 Geuvadis sequence mRNA NA12762 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204898/ERR204898_2.fastq.gz 8a19fadf2f8060e10539fa5d93162425 Geuvadis sequence mRNA NA12776 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205017/ERR205017_2.fastq.gz 8696eb861050fb5ca53270521bcbb3ed Geuvadis sequence mRNA NA18870 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204903/ERR204903_2.fastq.gz 55034e55b0e70f7b116a9cc7998a12d5 Geuvadis sequence mRNA NA18916 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204953/ERR204953_2.fastq.gz 9fd18c57940de7d70ca6909db106da89 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204897/ERR204897_2.fastq.gz 95ac443b5f14865666fd9f4401594dac Geuvadis sequence mRNA NA12399 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204964/ERR204964_1.fastq.gz 4850de4726ce3386f3c8a2707dd81d7c Geuvadis sequence mRNA NA12348 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204971/ERR204971_2.fastq.gz 6e2cb1614a9db572233ab5580de95b75 Geuvadis sequence mRNA NA19185 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204830/ERR204830_2.fastq.gz 133b23aec8aff6446d3a1bb221126927 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204952/ERR204952_1.fastq.gz f72b53b037a8de64bb7c6f66c152a797 Geuvadis sequence mRNA NA18505 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204952/ERR204952_2.fastq.gz f17bc6bf3123fdbea7f6fa38e06bf0c2 Geuvadis sequence mRNA NA18505 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204983/ERR204983_2.fastq.gz 4dc122910ed22abd84764cea2a80cde4 Geuvadis sequence mRNA NA12762 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204951/ERR204951_1.fastq.gz 7a2e8f1ef97e9bc6639b1d147825a6cd Geuvadis sequence mRNA HG00131 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204901/ERR204901_2.fastq.gz 55cf20f580251ec806e9852a8833ca00 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204975/ERR204975_2.fastq.gz 73ecab5306bb3433a7e21b0e650f18a7 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204997/ERR204997_1.fastq.gz 3447f98a255378e390bc6896ec6ff99d Geuvadis sequence mRNA NA19190 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204897/ERR204897_1.fastq.gz 0434eea1ead6d0963e83676cf551816c Geuvadis sequence mRNA NA12399 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204903/ERR204903_1.fastq.gz bc3fd55b8df6ceceaee0c1537597bd36 Geuvadis sequence mRNA NA18916 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205018/ERR205018_1.fastq.gz 59a3fc3b89da7c573e9d236e901bb60d Geuvadis sequence mRNA NA19113 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204876/ERR204876_1.fastq.gz cc3efcd620a354b3275284576ec54d83 Geuvadis sequence mRNA NA11995 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204876/ERR204876_2.fastq.gz e58e557129f6b7acf896ba86cb3ff813 Geuvadis sequence mRNA NA11995 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204943/ERR204943_1.fastq.gz b8dd25bdcf05742f1fb53656038a971a Geuvadis sequence mRNA NA12750 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204957/ERR204957_2.fastq.gz 19580719f25d07590460600b79ae956b Geuvadis sequence mRNA HG00277 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204871/ERR204871_2.fastq.gz 4a1b2b3f1ebc617f39214490286548e0 Geuvadis sequence mRNA NA20532 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204907/ERR204907_1.fastq.gz 347879063e7f118e0a933515d815ccd3 Geuvadis sequence mRNA NA12283 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204907/ERR204907_2.fastq.gz c62ee355cfa40380d7304c22205ef351 Geuvadis sequence mRNA NA12283 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204997/ERR204997_2.fastq.gz 978d55ad17adedb1e31bed40d6d2b3c6 Geuvadis sequence mRNA NA19190 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204914/ERR204914_1.fastq.gz 091a575107b5df358d9347277cf776ce Geuvadis sequence mRNA HG00143 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204979/ERR204979_2.fastq.gz 2d2a433fb98ff5798c298b6b12390f0b Geuvadis sequence mRNA NA12282 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204830/ERR204830_1.fastq.gz 17ca5fd647b7f060d6a063e9ac56c57a Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204991/ERR204991_2.fastq.gz 7bb46cd100d10fae041d964e4f53284b Geuvadis sequence mRNA NA18487 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204951/ERR204951_2.fastq.gz d1f38c2ee4a287d9b59c49a7c6e01137 Geuvadis sequence mRNA HG00131 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204901/ERR204901_1.fastq.gz 010b7e569ee9fa6f9984b1f92c45e849 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204976/ERR204976_1.fastq.gz 86fdec3dd57887787a18553e89561732 Geuvadis sequence mRNA NA12874 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204893/ERR204893_2.fastq.gz c792488c81584c4075ee24edea3206fc Geuvadis sequence mRNA NA12843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204893/ERR204893_1.fastq.gz a501c1b6ffff04e288387d9a1d0230cf Geuvadis sequence mRNA NA12843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204991/ERR204991_1.fastq.gz 9f6484e84317956699ee21bc988a14c3 Geuvadis sequence mRNA NA18487 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204858/ERR204858_1.fastq.gz 4021b1bb98f2a47a12b91b768c8c5316 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204874/ERR204874_1.fastq.gz d15ade77c36ccdd5a8038e9c4e3b0028 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205018/ERR205018_2.fastq.gz dbc2cf38a6177e5202ef61e21d003baf Geuvadis sequence mRNA NA19113 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205000/ERR205000_1.fastq.gz cae6da478f283da7613695cd7ce7bc8a Geuvadis sequence mRNA NA19114 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204957/ERR204957_1.fastq.gz 97b5d895ccaec0bd91061ade1c149f22 Geuvadis sequence mRNA HG00277 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204979/ERR204979_1.fastq.gz 51045533ecc45df34b0c298864e8dae6 Geuvadis sequence mRNA NA12282 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204896/ERR204896_2.fastq.gz 2e684534e0db1bd14276ab8983495dc3 Geuvadis sequence mRNA NA18909 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204871/ERR204871_1.fastq.gz fae9ee422194aab51d204b1eef41f458 Geuvadis sequence mRNA NA20532 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204844/ERR204844_1.fastq.gz e31f9552e9b47f0eee440dbc4ffd0423 Geuvadis sequence mRNA NA20798 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204914/ERR204914_2.fastq.gz 9f70f6765964b9a6b7f2511f97560f71 Geuvadis sequence mRNA HG00143 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204870/ERR204870_1.fastq.gz c59dfc6dd3c718d9681caded45d3fe45 Geuvadis sequence mRNA HG00315 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205014/ERR205014_1.fastq.gz a889c376370d7fe362775c2e07057260 Geuvadis sequence mRNA NA07346 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204844/ERR204844_2.fastq.gz c6f3d93a3a112f73120d06870a1f1ce2 Geuvadis sequence mRNA NA20798 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204955/ERR204955_1.fastq.gz 5140a3a7e1e5d13e3329dca3a4ab1485 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205000/ERR205000_2.fastq.gz 53c6a1eb6b4418c8abacc8f5964b67c9 Geuvadis sequence mRNA NA19114 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204874/ERR204874_2.fastq.gz 8b2025b7640456d8041bf3a5dccac9e6 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204945/ERR204945_2.fastq.gz e24922d1784a72ca3d0473aa93573793 Geuvadis sequence mRNA NA12154 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204976/ERR204976_2.fastq.gz 775590a538347f2d1a9b555d757eacd6 Geuvadis sequence mRNA NA12874 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204980/ERR204980_1.fastq.gz 0b318b01995964ad6a31d63194a531ea Geuvadis sequence mRNA NA19116 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204858/ERR204858_2.fastq.gz 1878abb012523e2299a50d76f3c4eb09 Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204999/ERR204999_2.fastq.gz 29def3c01256beb0fc4bca56deacb6dc Geuvadis sequence mRNA NA10847 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204917/ERR204917_1.fastq.gz 9b5caf139be27889105b241de2a4f627 Geuvadis sequence mRNA NA19141 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204881/ERR204881_1.fastq.gz fdb9fecded700c58e194a496c9cde8f4 Geuvadis sequence mRNA NA07000 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204881/ERR204881_2.fastq.gz 77235c6b1c25df03f884e657e858cf42 Geuvadis sequence mRNA NA07000 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204955/ERR204955_2.fastq.gz 5d48cdf935d841d9701f37020e5e3dd5 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205014/ERR205014_2.fastq.gz 0d03679bdadef65e0f70477a12a5bbd4 Geuvadis sequence mRNA NA07346 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205010/ERR205010_2.fastq.gz 12ccdbe1925750992007b53cb8b4fc4d Geuvadis sequence mRNA NA12842 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204896/ERR204896_1.fastq.gz 54e0a9c959bc32a67006c9116b3fc6cb Geuvadis sequence mRNA NA18909 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205021/ERR205021_1.fastq.gz 1fb8dc8c1295e149947d1545f5a786c2 Geuvadis sequence mRNA NA19210 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204980/ERR204980_2.fastq.gz 624dc0d7369c7847a45fddef0b2b77c6 Geuvadis sequence mRNA NA19116 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204832/ERR204832_1.fastq.gz 2199f641820b269850632fe3fd843454 Geuvadis sequence mRNA NA20756 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204878/ERR204878_2.fastq.gz d2761acb7570a7b66162f9757b23e51e Geuvadis sequence mRNA NA19108 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205021/ERR205021_2.fastq.gz 967334e179f74b569bcabd90c234bc30 Geuvadis sequence mRNA NA19210 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204902/ERR204902_2.fastq.gz 85be4acc9bedf0e5d4b0a4c5c449416c Geuvadis sequence mRNA NA12043 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204870/ERR204870_2.fastq.gz 68b7d126f4da56f7f055b07f2255b0b5 Geuvadis sequence mRNA HG00315 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204917/ERR204917_2.fastq.gz dc1a4a5d4011ee6099c563d55d06c6d7 Geuvadis sequence mRNA NA19141 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205011/ERR205011_1.fastq.gz f899d99a8de0c6f55a24e5f8c3230131 Geuvadis sequence mRNA NA12777 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204945/ERR204945_1.fastq.gz 76e8d9d4fe6df2481258f25378455dbe Geuvadis sequence mRNA NA12154 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204842/ERR204842_2.fastq.gz 26afd96bcc0c115b91e23fe2ab1da7e9 Geuvadis sequence mRNA NA18873 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204999/ERR204999_1.fastq.gz 3ccd53c3f3a91cf1f1eef5dbedce8f89 Geuvadis sequence mRNA NA10847 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205010/ERR205010_1.fastq.gz 58b68f874e76315e37f5e82987ce3241 Geuvadis sequence mRNA NA12842 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205023/ERR205023_2.fastq.gz 4be84010bd0a4e8969e1739336e49dae Geuvadis sequence mRNA NA11843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204911/ERR204911_2.fastq.gz 06831b203197c4fbb519d2cffff55b40 Geuvadis sequence mRNA NA20538 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204911/ERR204911_1.fastq.gz a056a559fe25798926acccca5c4a6d85 Geuvadis sequence mRNA NA20538 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204902/ERR204902_1.fastq.gz c9dc7d8ca46991d1096ec448c4fdd0a7 Geuvadis sequence mRNA NA12043 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204956/ERR204956_1.fastq.gz df62af4c41aec8c3125daffa10be6d52 Geuvadis sequence mRNA NA19209 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204949/ERR204949_2.fastq.gz 44e593ea055691ac61a9ff2c962c2f97 Geuvadis sequence mRNA NA18489 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204878/ERR204878_1.fastq.gz fc8b6dd483db0d5366ceff34b326cb7e Geuvadis sequence mRNA NA19108 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204869/ERR204869_2.fastq.gz 8a2cb048ff9482fbc2224b6dd7c473d7 Geuvadis sequence mRNA NA12144 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204842/ERR204842_1.fastq.gz 9252eae1b5c78f5dc99abd17bfd15e39 Geuvadis sequence mRNA NA18873 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205011/ERR205011_2.fastq.gz 178954c740eecdd4cb748a325f8fcae9 Geuvadis sequence mRNA NA12777 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204908/ERR204908_1.fastq.gz 56eda0fd140f45217761eeb0487cbc22 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204826/ERR204826_2.fastq.gz d33337baf6dc4a767d5d4894a0d56ec0 Geuvadis sequence mRNA HG00114 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204826/ERR204826_1.fastq.gz a2c16f5ebd813bf257abe0285ae28a26 Geuvadis sequence mRNA HG00114 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204832/ERR204832_2.fastq.gz f436951f111a825ab8015233fb89101f Geuvadis sequence mRNA NA20756 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204931/ERR204931_1.fastq.gz 348f67c132519c287b57033b1012d75f Geuvadis sequence mRNA NA11831 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204833/ERR204833_2.fastq.gz 329f7bf52a35a2a19a0045bb19277810 Geuvadis sequence mRNA NA12873 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204935/ERR204935_1.fastq.gz 6c9279fa3090057c432b898e7c7cd630 Geuvadis sequence mRNA HG00375 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204935/ERR204935_2.fastq.gz 4fda6b268562fd9efe00e29a3d7677be Geuvadis sequence mRNA HG00375 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204869/ERR204869_1.fastq.gz eb6f424818ef9f00a234dca9fece3683 Geuvadis sequence mRNA NA12144 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204857/ERR204857_2.fastq.gz 610ffecf7273acfb45a6c2e7ae5287e5 Geuvadis sequence mRNA HG00349 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204834/ERR204834_2.fastq.gz fe1e4e583969452e90c613c2f0486460 Geuvadis sequence mRNA NA11930 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205023/ERR205023_1.fastq.gz e213bc15608d9f541e9183b182f7a72b Geuvadis sequence mRNA NA11843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204932/ERR204932_2.fastq.gz 6aa28755d8f5864b40eaf0838e8f8ce2 Geuvadis sequence mRNA NA12006 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204956/ERR204956_2.fastq.gz cb72549d58a6cc68cae3bdc403ca3c6f Geuvadis sequence mRNA NA19209 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204949/ERR204949_1.fastq.gz 383060b5b74981a5af6cc11377dc9c94 Geuvadis sequence mRNA NA18489 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204965/ERR204965_1.fastq.gz 5cc27b054ac45e802fcbc4a006bb2bad Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204982/ERR204982_1.fastq.gz a39859894aa79b0198bbabc38ff149d8 Geuvadis sequence mRNA HG00142 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204982/ERR204982_2.fastq.gz f4d36a9c598ac74281908a82fa029082 Geuvadis sequence mRNA HG00142 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204932/ERR204932_1.fastq.gz 14072834e1610a836d8b76ae4902d92c Geuvadis sequence mRNA NA12006 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204852/ERR204852_2.fastq.gz 106196f5d82fb5c9c0c4399707736ce1 Geuvadis sequence mRNA NA19248 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204941/ERR204941_1.fastq.gz eb9bb0d87731098b7eeca7d63566b84d Geuvadis sequence mRNA NA12751 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204908/ERR204908_2.fastq.gz 6b13fd96f5ae7d12b868266f5eca6dd3 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204880/ERR204880_2.fastq.gz 6395dd8a33bc0a4ba02d99f19807e3c2 Geuvadis sequence mRNA NA19247 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204931/ERR204931_2.fastq.gz 40b0c240bcd141c25a52d0aa38ad2387 Geuvadis sequence mRNA NA11831 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204834/ERR204834_1.fastq.gz 59f361cf884e59e03c04a3cff5976657 Geuvadis sequence mRNA NA11930 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204847/ERR204847_2.fastq.gz fe6f3dc38757ec9e7aeb5e0b34651f0d Geuvadis sequence mRNA NA19118 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204833/ERR204833_1.fastq.gz afafb1d6e5d580a0fbd54e298fdb9956 Geuvadis sequence mRNA NA12873 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204867/ERR204867_2.fastq.gz d7f0061d2032dd555d0b7e1e8bde1c4b Geuvadis sequence mRNA NA12004 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204857/ERR204857_1.fastq.gz 3ec07047ede8bf42d71378661f0ed602 Geuvadis sequence mRNA HG00349 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204906/ERR204906_2.fastq.gz 785acbf0026a5e4820ae6571401c1108 Geuvadis sequence mRNA NA19213 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204923/ERR204923_2.fastq.gz 8d9c43bdf16ebf68457d9300898af70b Geuvadis sequence mRNA NA19214 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204867/ERR204867_1.fastq.gz e20cf4e894a786a94cdceb22e5d78089 Geuvadis sequence mRNA NA12004 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204824/ERR204824_1.fastq.gz c8bbeb9361b6204a179b46a9d55552b9 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204880/ERR204880_1.fastq.gz b3349024c9c64eefc3d52cc55f011d28 Geuvadis sequence mRNA NA19247 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204941/ERR204941_2.fastq.gz 7d3b8fbfb16ee3c27de1c70b221984b0 Geuvadis sequence mRNA NA12751 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204820/ERR204820_2.fastq.gz 125cab42bcefb7f1218f65c078e750a9 Geuvadis sequence mRNA NA19223 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204965/ERR204965_2.fastq.gz 7728f08ab8ae4718efdb3220caec59b8 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204905/ERR204905_2.fastq.gz d893b66aa1a697860289b5c439990065 Geuvadis sequence mRNA HG00378 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204852/ERR204852_1.fastq.gz 68dffe05d3a94436979188f787fde6eb Geuvadis sequence mRNA NA19248 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204847/ERR204847_1.fastq.gz 409fbb0551332f68556091b16964b497 Geuvadis sequence mRNA NA19118 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204973/ERR204973_1.fastq.gz 3b1afbafe435af20c59f1d4043d656f9 Geuvadis sequence mRNA NA12400 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204825/ERR204825_2.fastq.gz af321cee745909149f27a9943ac6c32e Geuvadis sequence mRNA NA19093 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204825/ERR204825_1.fastq.gz d44f303c80e76ed5af672621669cf727 Geuvadis sequence mRNA NA19093 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204824/ERR204824_2.fastq.gz 663caf1b6950fa51568884dae64260f5 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204819/ERR204819_1.fastq.gz b53f19072e94d3930be9174cffd91402 Geuvadis sequence mRNA NA12760 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205005/ERR205005_2.fastq.gz 1d1613955162e64c647c6533b1dbbab2 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204923/ERR204923_1.fastq.gz 4379ccec081b36ee93a7117e325adb41 Geuvadis sequence mRNA NA19214 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204986/ERR204986_1.fastq.gz c2bcb01593f98b60327de2fbf7734a91 Geuvadis sequence mRNA NA12872 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204905/ERR204905_1.fastq.gz 66a446ec07ce7c2215d122ad5c1557ed Geuvadis sequence mRNA HG00378 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204820/ERR204820_1.fastq.gz 3df456fea900031d622b2acd00f6f05c Geuvadis sequence mRNA NA19223 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188366/ERR188366_2.fastq.gz 87d8e3372b27421958003d3cb0f3f26f Geuvadis sequence mRNA HG00264 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204919/ERR204919_2.fastq.gz 0e6e6b97ceb4b7f2cc3820fa416b5583 Geuvadis sequence mRNA NA18907 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204919/ERR204919_1.fastq.gz 4572cc6270d8b246e79ffbffe74ac084 Geuvadis sequence mRNA NA18907 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204906/ERR204906_1.fastq.gz 3a925ea7de2e8c6f6dbd331e986fea00 Geuvadis sequence mRNA NA19213 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204909/ERR204909_2.fastq.gz a0857ee1345a842cbf18cd0164f66980 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188182/ERR188182_1.fastq.gz 1c191583f744748f97e19093d24c1f89 Geuvadis sequence mRNA NA18912 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204840/ERR204840_2.fastq.gz d17a6a010f9c33b6f9c851a3524150b8 Geuvadis sequence mRNA NA12827 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204840/ERR204840_1.fastq.gz aedb22a5dce58d1846047324b51aeda9 Geuvadis sequence mRNA NA12827 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204986/ERR204986_2.fastq.gz 6566e13016d9ec8f06d1f3c2eb1dd712 Geuvadis sequence mRNA NA12872 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204972/ERR204972_2.fastq.gz dff044d9621b2b58b079f51251fc3e4b Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188207/ERR188207_2.fastq.gz ce4ab98f094f2cd4d24d9c84cd8ee425 Geuvadis sequence mRNA NA19222 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204973/ERR204973_2.fastq.gz 0c6635d37e0a6c4873a185c5ec54b899 Geuvadis sequence mRNA NA12400 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204882/ERR204882_1.fastq.gz 80224d407c5521d8b85b07cab4e4c8ae Geuvadis sequence mRNA HG00099 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204819/ERR204819_2.fastq.gz 4bdd66bf3f6f5f52c04461639e3c8148 Geuvadis sequence mRNA NA12760 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR205/ERR205005/ERR205005_1.fastq.gz 7f86bd0d8ef53aba97edb1960d620a3d Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188387/ERR188387_1.fastq.gz 337c75c355a80bafd6e6fb9bd1190a1a Geuvadis sequence mRNA HG00160 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204872/ERR204872_2.fastq.gz dc4b63764e776695086135c12d879682 Geuvadis sequence mRNA HG00338 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204872/ERR204872_1.fastq.gz 6ead15b6ef70eca9673440b050c21e39 Geuvadis sequence mRNA HG00338 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204882/ERR204882_2.fastq.gz cb1245cb7aac5596fbaf25447fd65c2f Geuvadis sequence mRNA HG00099 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188182/ERR188182_2.fastq.gz 1929dcdf988d9cdd8a2d4de366b5a1d6 Geuvadis sequence mRNA NA18912 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188165/ERR188165_2.fastq.gz ac2a15f445f36adb3ba639dea93e2a41 Geuvadis sequence mRNA NA18510 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188366/ERR188366_1.fastq.gz 88be956d00b8b87f19a67f42a47136df Geuvadis sequence mRNA HG00264 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188188/ERR188188_1.fastq.gz e68d98773ea9773ca4fc9357231fb533 Geuvadis sequence mRNA NA19099 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204909/ERR204909_1.fastq.gz ae0be24d90088e8f26cf8e478ec6e242 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188231/ERR188231_2.fastq.gz bfd1051eb96e860fd07eaef5c73f6d8b Geuvadis sequence mRNA HG00097 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188077/ERR188077_1.fastq.gz 9646bebdcd518b1bfac9be075ca8a69c Geuvadis sequence mRNA NA11893 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188205/ERR188205_1.fastq.gz de5a8ce610090f54b15fb41f49ec0018 Geuvadis sequence mRNA HG00310 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188205/ERR188205_2.fastq.gz a5757d3715710392f4d92b646a11edc0 Geuvadis sequence mRNA HG00310 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR204/ERR204972/ERR204972_1.fastq.gz c5c69dd1294190f7d4133fdefca7968b Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188178/ERR188178_2.fastq.gz 47bc99aae6dbb8553df3841f703f728a Geuvadis sequence mRNA NA19114 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188469/ERR188469_1.fastq.gz 4f062b1fcf624ab620c7bb4726085505 Geuvadis sequence mRNA HG01334 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188207/ERR188207_1.fastq.gz 62559f0a96aee37fe4041996bf10586f Geuvadis sequence mRNA NA19222 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188114/ERR188114_2.fastq.gz 5725210e538d006a69cf3ca50f2c0a08 Geuvadis sequence mRNA NA20534 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188188/ERR188188_2.fastq.gz 8fd38c028cc9c218933e86907612337b Geuvadis sequence mRNA NA19099 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188387/ERR188387_2.fastq.gz 4e29b399801ac71b098a6b2180b2beaa Geuvadis sequence mRNA HG00160 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188238/ERR188238_2.fastq.gz 0e0a10354cfd0cc3522e240a46caa5fb Geuvadis sequence mRNA HG00269 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188434/ERR188434_2.fastq.gz beada597bda18c63f399dc4a621370a3 Geuvadis sequence mRNA NA19209 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188434/ERR188434_1.fastq.gz 0c7803a7b2e219e276d04901d0686be1 Geuvadis sequence mRNA NA19209 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188114/ERR188114_1.fastq.gz 471559c3f5846d4bf5992c6e616a5751 Geuvadis sequence mRNA NA20534 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188181/ERR188181_1.fastq.gz bbaf1542253f0dec2d638858b4c4ef07 Geuvadis sequence mRNA NA12413 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188220/ERR188220_1.fastq.gz 841b9234f766fdd2ca076f75bef40bf4 Geuvadis sequence mRNA NA12400 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188165/ERR188165_1.fastq.gz 713751be0ea762c10b1a4d502e54b4dc Geuvadis sequence mRNA NA18510 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188217/ERR188217_1.fastq.gz d8e7a2f6fff63e5980fec7ec1bca7128 Geuvadis sequence mRNA NA11832 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188231/ERR188231_1.fastq.gz b0a9bfd140eeea65d93f4004cabc4d11 Geuvadis sequence mRNA HG00097 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188469/ERR188469_2.fastq.gz 356b05b4578b6ebb3bcc6a0af381d50c Geuvadis sequence mRNA HG01334 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188196/ERR188196_1.fastq.gz 29be163b39bbbc083d4c524a91e4b796 Geuvadis sequence mRNA NA12717 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188077/ERR188077_2.fastq.gz bf5fcde17a746e218221ec3560d1435d Geuvadis sequence mRNA NA11893 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188260/ERR188260_1.fastq.gz 8fd2c16b86623b79f9d7884d8240d4a5 Geuvadis sequence mRNA HG00369 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188178/ERR188178_1.fastq.gz 698edf5634964d197782fe6707e8087f Geuvadis sequence mRNA NA19114 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188304/ERR188304_2.fastq.gz 48977a48628f99f7a0e12937c56419aa Geuvadis sequence mRNA HG00179 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188100/ERR188100_1.fastq.gz 7151bac6e7f1e765663683545b7a8e54 Geuvadis sequence mRNA NA12762 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188260/ERR188260_2.fastq.gz 47b889986eb15698d222c3d706594af8 Geuvadis sequence mRNA HG00369 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188411/ERR188411_1.fastq.gz 0df0d7dddfbcbced60b2b4177897fcbf Geuvadis sequence mRNA HG00243 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188217/ERR188217_2.fastq.gz 8fab0115597a9ed0a94bf7df256cff6e Geuvadis sequence mRNA NA11832 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188220/ERR188220_2.fastq.gz 01cf64b2aea7db023a6b241024e6bb1b Geuvadis sequence mRNA NA12400 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188107/ERR188107_1.fastq.gz 832e7dcab80f80304a9073cbdfee6ed4 Geuvadis sequence mRNA NA12342 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188238/ERR188238_1.fastq.gz d377fe6310845e3def6373684a5b0616 Geuvadis sequence mRNA HG00269 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188272/ERR188272_1.fastq.gz d1aebaad3820fd57f796742a652c1d06 Geuvadis sequence mRNA NA11881 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188181/ERR188181_2.fastq.gz 5b83566f834d55b2c28f0b8f0ab7c214 Geuvadis sequence mRNA NA12413 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188196/ERR188196_2.fastq.gz 8148f7212f801c7955678f63b87ffd44 Geuvadis sequence mRNA NA12717 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188268/ERR188268_1.fastq.gz 9e15525d6682a68a4f94f1518c9105ad Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188084/ERR188084_2.fastq.gz 9215999469acc58a24aba488a6a6cae8 Geuvadis sequence mRNA HG00152 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188084/ERR188084_1.fastq.gz e971255d044ae5bec939f2728e56f6b1 Geuvadis sequence mRNA HG00152 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188411/ERR188411_2.fastq.gz 372235b00c6201f296145f333f48c29d Geuvadis sequence mRNA HG00243 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188466/ERR188466_1.fastq.gz 10b78d6d69a6c4146ff825068cb21186 Geuvadis sequence mRNA HG00142 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188096/ERR188096_1.fastq.gz d7c1a8517d6cf1cb3553349bb3d4932a Geuvadis sequence mRNA NA18933 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188100/ERR188100_2.fastq.gz bd8cfd514d02ce452135aeac89950c5d Geuvadis sequence mRNA NA12762 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188132/ERR188132_2.fastq.gz 051a8f06a2c5c3a709d76d6c6f4f202c Geuvadis sequence mRNA NA20797 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188272/ERR188272_2.fastq.gz bf45c8634dc41f57cc548c3ebe10d92a Geuvadis sequence mRNA NA11881 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188107/ERR188107_2.fastq.gz f928db2154e4f5d39ad7a33dc4d0738d Geuvadis sequence mRNA NA12342 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188459/ERR188459_2.fastq.gz da70b882b76627e627152563e2ea1a87 Geuvadis sequence mRNA NA19143 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188295/ERR188295_2.fastq.gz 9e17e831be85b5f9c75f706d70e90752 Geuvadis sequence mRNA NA20757 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188295/ERR188295_1.fastq.gz 4da330ca250f4406c36df9af6fbca996 Geuvadis sequence mRNA NA20757 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188304/ERR188304_1.fastq.gz c5e5a8b30f4d0b375f2fd45ebabaf81e Geuvadis sequence mRNA HG00179 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188344/ERR188344_2.fastq.gz 96e570381d399f121b8e553690c93188 Geuvadis sequence mRNA NA18868 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188301/ERR188301_2.fastq.gz 9cf131544389c23543f3ee89e2b53c9f Geuvadis sequence mRNA NA11994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188358/ERR188358_2.fastq.gz f480e6bbb8f3f7e21d2fbd777f1192be Geuvadis sequence mRNA HG00367 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188358/ERR188358_1.fastq.gz 964e45ffb46c2481540977c66ba589b5 Geuvadis sequence mRNA HG00367 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188132/ERR188132_1.fastq.gz aaa26471bef72fd6f9a1a824c00607d2 Geuvadis sequence mRNA NA20797 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188125/ERR188125_2.fastq.gz 68c9f2bf6be8578aaa2cd8ba06bd33e5 Geuvadis sequence mRNA NA20826 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188053/ERR188053_1.fastq.gz a6293845c730979db7ddbf6390b412c2 Geuvadis sequence mRNA HG00242 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188268/ERR188268_2.fastq.gz b3376a614969b198e0a2d88f88900f2d Geuvadis sequence mRNA NA19095 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188470/ERR188470_2.fastq.gz ed40d08129b3c856def9b43f052cdf7f Geuvadis sequence mRNA HG02215 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188466/ERR188466_2.fastq.gz 06b390b0fd7baa85aabded60e7971a44 Geuvadis sequence mRNA HG00142 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188096/ERR188096_2.fastq.gz a7ec21a34cebd9a61cd3708546a8fa34 Geuvadis sequence mRNA NA18933 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188024/ERR188024_1.fastq.gz aeaa1770aa431030d37e68a7e5292bc2 Geuvadis sequence mRNA NA12749 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188460/ERR188460_2.fastq.gz 73969bd85a5dc4ed4104dbe4ebf038e9 Geuvadis sequence mRNA NA19153 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188460/ERR188460_1.fastq.gz 97499351767215d95803d866e20ec6a5 Geuvadis sequence mRNA NA19153 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188470/ERR188470_1.fastq.gz ff1498730589f7caa0ebd60393c3e0fd Geuvadis sequence mRNA HG02215 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188122/ERR188122_2.fastq.gz 7f259c5f2ba8d12072cfa191411117b8 Geuvadis sequence mRNA NA11894 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188462/ERR188462_2.fastq.gz 7aca7f1d0bd61960b8ab047fd765f8e2 Geuvadis sequence mRNA HG00375 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188459/ERR188459_1.fastq.gz a6dde5c7f02d19ed04625463ee3e6ba9 Geuvadis sequence mRNA NA19143 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188478/ERR188478_2.fastq.gz 5d4a3a2f663c3d8b1b9f837bcceb904a Geuvadis sequence mRNA HG01791 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188344/ERR188344_1.fastq.gz bb5c325820bb9e6d02b990d0d84d3267 Geuvadis sequence mRNA NA18868 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188053/ERR188053_2.fastq.gz 80ad25c4a44ff0c5cca80ad32a9602a0 Geuvadis sequence mRNA HG00242 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188353/ERR188353_2.fastq.gz 73e0f5c4099ea787a1373705dc95e951 Geuvadis sequence mRNA NA20586 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188301/ERR188301_1.fastq.gz 8e57e5e6eec9b53e4378d4aea65df6d5 Geuvadis sequence mRNA NA11994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188426/ERR188426_1.fastq.gz 1bf380bc4f83385b21e2ab91c2a255ee Geuvadis sequence mRNA NA11843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188125/ERR188125_1.fastq.gz 0e7ba999a86437c21a9241940f69717e Geuvadis sequence mRNA NA20826 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188049/ERR188049_2.fastq.gz d18625d4950ec7a2ec0f98821344387d Geuvadis sequence mRNA NA11931 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188394/ERR188394_1.fastq.gz 7d813a6505ded85aaa4bee6e42c30bdd Geuvadis sequence mRNA NA20813 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188426/ERR188426_2.fastq.gz 6c1883cd688b9fd1e7e0a184ff81a137 Geuvadis sequence mRNA NA11843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188197/ERR188197_2.fastq.gz 1db32f79d787c5c7a408a0d8587ef197 Geuvadis sequence mRNA HG00341 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188478/ERR188478_1.fastq.gz bb7adfa8165b45f1b7e6fa1206b52b7f Geuvadis sequence mRNA HG01791 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188462/ERR188462_1.fastq.gz fbbc90dfeb8e9654dc5ce6e5a87c3711 Geuvadis sequence mRNA HG00375 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188308/ERR188308_1.fastq.gz accfd12649ee50c5e121d38380816a85 Geuvadis sequence mRNA NA12760 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188024/ERR188024_2.fastq.gz 0fb2ce6c6f2dc59835be57fa5f941888 Geuvadis sequence mRNA NA12749 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188294/ERR188294_1.fastq.gz 6e6b84f51f6d007acd0a5d693e5a1536 Geuvadis sequence mRNA HG00332 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188122/ERR188122_1.fastq.gz 0913c98b1ba28c3b7bbd091677809424 Geuvadis sequence mRNA NA11894 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188353/ERR188353_1.fastq.gz 0067ab37378a0592ea45a8438fd586c8 Geuvadis sequence mRNA NA20586 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188350/ERR188350_2.fastq.gz 3b21beaad5c6e43db20fec3afe9deb6a Geuvadis sequence mRNA NA12399 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188417/ERR188417_2.fastq.gz 43f0ca2ae7923bc6e1a6a4e4a3a8b40b Geuvadis sequence mRNA HG00327 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188417/ERR188417_1.fastq.gz ecaa740be1d40031c269d9f092112d14 Geuvadis sequence mRNA HG00327 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188197/ERR188197_1.fastq.gz 1303385860613dbab8c8989109baecda Geuvadis sequence mRNA HG00341 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188209/ERR188209_2.fastq.gz bc29cc213785800b8080d920e01d74f4 Geuvadis sequence mRNA NA19214 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188427/ERR188427_2.fastq.gz f0a3169571fa99ea12fa6182ffa51b3c Geuvadis sequence mRNA NA19159 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188394/ERR188394_2.fastq.gz 5cd67e6483d83a9bdf23c75be2972ec5 Geuvadis sequence mRNA NA20813 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188221/ERR188221_1.fastq.gz 74c13efc8af5977f2c0585af24c1e106 Geuvadis sequence mRNA NA19113 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188294/ERR188294_2.fastq.gz ab45d18f0f286557cfac326ad2589898 Geuvadis sequence mRNA HG00332 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188455/ERR188455_1.fastq.gz 304d3755e2f1ccd1b7238cb8b6db0dd6 Geuvadis sequence mRNA HG00146 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188141/ERR188141_2.fastq.gz 2e40058346b29addbe4e15f0a8172de5 Geuvadis sequence mRNA HG00343 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188428/ERR188428_1.fastq.gz b70f4f3ce0d3deeca092ad9226a4e561 Geuvadis sequence mRNA HG00099 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188428/ERR188428_2.fastq.gz 7dadef926c99d5387e745e361bbd1d91 Geuvadis sequence mRNA HG00099 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188049/ERR188049_1.fastq.gz 7943a064b3eaecc7a95854d51c014cea Geuvadis sequence mRNA NA11931 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188350/ERR188350_1.fastq.gz e973a6b799be40e288324f14d6663f16 Geuvadis sequence mRNA NA12399 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188315/ERR188315_2.fastq.gz 34086d6aa24bd5b4c335ca037124c1e9 Geuvadis sequence mRNA HG00120 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188308/ERR188308_2.fastq.gz 9188c7ee17585ffc3cf27c1822f5241c Geuvadis sequence mRNA NA12760 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188412/ERR188412_1.fastq.gz c0e2b483a2c8f2bad3e63e68c755ebea Geuvadis sequence mRNA HG00129 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188221/ERR188221_2.fastq.gz d1a8a066d3a5be09463a9fe68ca55e1c Geuvadis sequence mRNA NA19113 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188427/ERR188427_1.fastq.gz dabbaf1c0277645fba4b0bd6caa0bbfc Geuvadis sequence mRNA NA19159 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188477/ERR188477_1.fastq.gz 51ca71b37a4ccb9fc049cc5fab4d2dfd Geuvadis sequence mRNA NA12778 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188335/ERR188335_1.fastq.gz 7571a81adbf1bf9776fee50ea77be3dc Geuvadis sequence mRNA NA20798 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188335/ERR188335_2.fastq.gz e9cf03accaf7529eff9f94943a102769 Geuvadis sequence mRNA NA20798 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188209/ERR188209_1.fastq.gz 7206923fd171e845979e19e1b4af9580 Geuvadis sequence mRNA NA19214 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188336/ERR188336_1.fastq.gz 7f15abd8fda8027b3112b0c9543ac0d2 Geuvadis sequence mRNA NA12004 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188045/ERR188045_1.fastq.gz c49acf0faed37a8ec2e9484198a8329b Geuvadis sequence mRNA HG00321 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188141/ERR188141_1.fastq.gz 9c3cf4e02730f74da84f7f7de9436721 Geuvadis sequence mRNA HG00343 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188150/ERR188150_2.fastq.gz 45f761e931e3e0621319869635cf5080 Geuvadis sequence mRNA HG00366 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188412/ERR188412_2.fastq.gz 1e2aaedc4ad76194d574d073a055606c Geuvadis sequence mRNA HG00129 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188315/ERR188315_1.fastq.gz 0802ade5056220632649f1ad187ecf9f Geuvadis sequence mRNA HG00120 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188273/ERR188273_2.fastq.gz c2d1bacfe80753e925659f83b6eef76f Geuvadis sequence mRNA NA18505 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188391/ERR188391_2.fastq.gz 5e27899c700751a282e0a42ccc035e2a Geuvadis sequence mRNA HG01789 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188391/ERR188391_1.fastq.gz 5b270354a82f135d5c29aa206c980f40 Geuvadis sequence mRNA HG01789 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188455/ERR188455_2.fastq.gz eaf98b2225c8d964472e88a8d86310b0 Geuvadis sequence mRNA HG00146 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188111/ERR188111_2.fastq.gz 1d7b512c0828f702de92c1bb4915757d Geuvadis sequence mRNA HG00255 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188443/ERR188443_1.fastq.gz 6458d9c8dd88adac24301a593f39a536 Geuvadis sequence mRNA HG00130 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188120/ERR188120_1.fastq.gz 61890a68bdaaec99c3f864c12b839407 Geuvadis sequence mRNA NA19256 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188120/ERR188120_2.fastq.gz c0c20472da737e9fa94df7de4de2380c Geuvadis sequence mRNA NA19256 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188150/ERR188150_1.fastq.gz b275414070fc3403abf38fe5c4771898 Geuvadis sequence mRNA HG00366 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188380/ERR188380_1.fastq.gz 3e9e6eca8e2e627c74036153a79a6309 Geuvadis sequence mRNA NA20502 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188395/ERR188395_2.fastq.gz 9328ef628f8456159eae009150275a79 Geuvadis sequence mRNA HG00365 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188477/ERR188477_2.fastq.gz 13cac8631bb4f04ff9d8b3221423fb48 Geuvadis sequence mRNA NA12778 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188303/ERR188303_2.fastq.gz 2619a92cb58b46085e603e544698b6d8 Geuvadis sequence mRNA HG00364 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188336/ERR188336_2.fastq.gz 98724655c46c9d5259fb6cc67912736e Geuvadis sequence mRNA NA12004 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188045/ERR188045_2.fastq.gz 5662a651378486f242a5d4131003b778 Geuvadis sequence mRNA HG00321 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188198/ERR188198_2.fastq.gz 73f110cc88e2b3d21f1acf0cb11760f6 Geuvadis sequence mRNA HG00373 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188379/ERR188379_2.fastq.gz 81287643997e549db1e4f0f86083bad9 Geuvadis sequence mRNA HG00148 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188379/ERR188379_1.fastq.gz ffbc3bbb2795f87a35d580549f122d28 Geuvadis sequence mRNA HG00148 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188303/ERR188303_1.fastq.gz 78b6353edb584cc12cd5b080a761d087 Geuvadis sequence mRNA HG00364 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188223/ERR188223_1.fastq.gz fc04785d06d99916d825e29628660749 Geuvadis sequence mRNA NA18908 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188340/ERR188340_1.fastq.gz 89d561fe4f5e8fa760118903c633b082 Geuvadis sequence mRNA HG00353 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188273/ERR188273_1.fastq.gz e3a14afe97544c882ca52cb834f7485f Geuvadis sequence mRNA NA18505 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188098/ERR188098_2.fastq.gz 2f1b60e6cd9c18f05285c6f570ed30fb Geuvadis sequence mRNA HG00337 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188111/ERR188111_1.fastq.gz 428cb1426950cf6c3172ffa7d4c116ac Geuvadis sequence mRNA HG00255 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188395/ERR188395_1.fastq.gz b82c7f7d22e85ac4382c245916840413 Geuvadis sequence mRNA HG00365 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188057/ERR188057_1.fastq.gz a43cf3d922d943e2a2eafc354d64bc89 Geuvadis sequence mRNA HG00262 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188443/ERR188443_2.fastq.gz 9111ef5c8c0ea906fd92624b8122f265 Geuvadis sequence mRNA HG00130 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188212/ERR188212_2.fastq.gz 5e0085f6bc83bf5248b9d2e73058b574 Geuvadis sequence mRNA HG00231 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188380/ERR188380_2.fastq.gz 39b778f1f192d0f453d1a28c8d9211e7 Geuvadis sequence mRNA NA20502 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188298/ERR188298_1.fastq.gz 41cbf81b57eb7052c2bfe6d91bf80dfa Geuvadis sequence mRNA NA18867 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188108/ERR188108_1.fastq.gz 7e314ead0467bc72ac327487a9970be5 Geuvadis sequence mRNA NA20754 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188212/ERR188212_1.fastq.gz 6ca4698656f4e3b3448229d790b3e73f Geuvadis sequence mRNA HG00231 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188461/ERR188461_1.fastq.gz a0c9380821404f9b3ff81cf497b0180f Geuvadis sequence mRNA HG00126 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188098/ERR188098_1.fastq.gz 87b1be40213dda26267f17e215ffe1b7 Geuvadis sequence mRNA HG00337 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188340/ERR188340_2.fastq.gz 83b7df2211b2ef8f2d125c1b8b51f8e8 Geuvadis sequence mRNA HG00353 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188170/ERR188170_1.fastq.gz df422bd08f1c28147ba39522b7f6ddfb Geuvadis sequence mRNA NA19131 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188198/ERR188198_1.fastq.gz 7d758fbd5c9e897d1151379b6b8a5c1c Geuvadis sequence mRNA HG00373 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188384/ERR188384_1.fastq.gz ad4a34408d1b8c89329c1d562011ba46 Geuvadis sequence mRNA NA20795 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188223/ERR188223_2.fastq.gz 5d1c97c6ed4ba560f60f315a7c5f3d4f Geuvadis sequence mRNA NA18908 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188057/ERR188057_2.fastq.gz 019f433dda8188a71a4672807245fab0 Geuvadis sequence mRNA HG00262 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188184/ERR188184_1.fastq.gz c8718ba675807330f36d6901d416b539 Geuvadis sequence mRNA NA19147 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188465/ERR188465_2.fastq.gz 1f21ff39b10529b4cd58e0d72361282f Geuvadis sequence mRNA HG00112 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188465/ERR188465_1.fastq.gz 65550a41114b7b981b0c219b86b240bc Geuvadis sequence mRNA HG00112 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188461/ERR188461_2.fastq.gz f7f354d55ebb87cc2842d9990b9992fb Geuvadis sequence mRNA HG00126 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188262/ERR188262_1.fastq.gz b164ca8eb82f4c8b761f068539533451 Geuvadis sequence mRNA NA12283 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188481/ERR188481_1.fastq.gz 1030d395fa78f7d59652f10737579b9e Geuvadis sequence mRNA NA07048 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188108/ERR188108_2.fastq.gz a3c4857c2ed3e8f1c3ab47b60d585673 Geuvadis sequence mRNA NA20754 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188192/ERR188192_2.fastq.gz 1c3b020c1290b2f6e16314cdd50f41ca Geuvadis sequence mRNA NA20786 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188384/ERR188384_2.fastq.gz 0042b8bc1dbf0d056d8ba64552c0d438 Geuvadis sequence mRNA NA20795 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188170/ERR188170_2.fastq.gz 2e2eed1a3a0d6e80385d919c0d382413 Geuvadis sequence mRNA NA19131 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188414/ERR188414_1.fastq.gz 4a9ae2ea49c5350effc4fadd48328215 Geuvadis sequence mRNA NA12043 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188386/ERR188386_1.fastq.gz 63f8de9b83da77057f5aa406b0513969 Geuvadis sequence mRNA NA20521 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188386/ERR188386_2.fastq.gz 02aadc04831cdb275ae194b28e410b25 Geuvadis sequence mRNA NA20521 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188298/ERR188298_2.fastq.gz 27f85728a68d134c7236fc8baa15aef8 Geuvadis sequence mRNA NA18867 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188267/ERR188267_2.fastq.gz e6b0ccc2f76dc49b5f016994d2ee4067 Geuvadis sequence mRNA HG00266 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188374/ERR188374_2.fastq.gz cdcbdf0d8fd38772287a1ca014e3d6d3 Geuvadis sequence mRNA HG00360 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188438/ERR188438_1.fastq.gz 278554070179276eb320d5cbdbf819a8 Geuvadis sequence mRNA NA12272 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188438/ERR188438_2.fastq.gz 1ce7fd34051651519a4d591821a8ebed Geuvadis sequence mRNA NA12272 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188192/ERR188192_1.fastq.gz 10c9bdbe33a1a5d3bac25f8b5fe30810 Geuvadis sequence mRNA NA20786 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188110/ERR188110_1.fastq.gz dcd908ef5a41ba1e405f7fb4174861c8 Geuvadis sequence mRNA NA20760 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188405/ERR188405_1.fastq.gz 971ea6298ebe1feff302d3d17afbedb4 Geuvadis sequence mRNA NA20799 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188184/ERR188184_2.fastq.gz ecdca34406257ccede42727fec55b947 Geuvadis sequence mRNA NA19147 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188448/ERR188448_2.fastq.gz dac8e58ef8cce0e127d949daa2b9101b Geuvadis sequence mRNA HG00244 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188262/ERR188262_2.fastq.gz 78a6e1ce95384b6fc33ce670d7bcbaf0 Geuvadis sequence mRNA NA12283 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188481/ERR188481_2.fastq.gz b50eea75898fc1567949e91ea9236e3a Geuvadis sequence mRNA NA07048 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188404/ERR188404_1.fastq.gz 22a4592a2111604412500369ee590fff Geuvadis sequence mRNA NA12750 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188137/ERR188137_1.fastq.gz ba5bf678095b28a7dfb70cf630cb69b5 Geuvadis sequence mRNA NA20812 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188137/ERR188137_2.fastq.gz 09b54a32dc77f48ec4f59db056790c8a Geuvadis sequence mRNA NA20812 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188448/ERR188448_1.fastq.gz 95df5463efdb2ba2bc04ea2a8a049f61 Geuvadis sequence mRNA HG00244 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188081/ERR188081_1.fastq.gz c2024b319ccea3b9bb056913d9268c2b Geuvadis sequence mRNA NA12814 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188409/ERR188409_2.fastq.gz b96f1592d5d9465b591258795b1d3ae9 Geuvadis sequence mRNA NA18923 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188414/ERR188414_2.fastq.gz 4ecb7dd0d1c0121d3863cf0328ae1135 Geuvadis sequence mRNA NA12043 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188039/ERR188039_2.fastq.gz 5e17018813ef37e9d8cf565005a930a6 Geuvadis sequence mRNA NA12144 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188267/ERR188267_1.fastq.gz 9eff1abdc5f42b850969f34235ff1920 Geuvadis sequence mRNA HG00266 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188405/ERR188405_2.fastq.gz 76edf1ad2688a0715a7f712fd896f43b Geuvadis sequence mRNA NA20799 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188229/ERR188229_1.fastq.gz 079d68acf0428be7fe06b59417ff9a0a Geuvadis sequence mRNA NA12044 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188374/ERR188374_1.fastq.gz 7006db2a464f5989890193ebdc7afae9 Geuvadis sequence mRNA HG00360 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188023/ERR188023_2.fastq.gz 27fd0b22353239dfcfdc937578c9c18f Geuvadis sequence mRNA HG00315 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188110/ERR188110_2.fastq.gz 003e53d3950f196e45ed3bc9b7fe584d Geuvadis sequence mRNA NA20760 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188451/ERR188451_1.fastq.gz 9bd6ea142d242c9f021206f59ccdcc1c Geuvadis sequence mRNA NA19149 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188324/ERR188324_1.fastq.gz 1508f35a2fa9a9e3d22fba0b3238107c Geuvadis sequence mRNA NA07347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188023/ERR188023_1.fastq.gz 5ddc0d1424dfd3f5a166345c3241406f Geuvadis sequence mRNA HG00315 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188312/ERR188312_1.fastq.gz a4b52553744ad9ffb4ce7bdabddde34c Geuvadis sequence mRNA HG00233 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188039/ERR188039_1.fastq.gz 90195a9a439dbce1013550013f08d50f Geuvadis sequence mRNA NA12144 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188404/ERR188404_2.fastq.gz 70e8e806c9b4adef4296837bd734e305 Geuvadis sequence mRNA NA12750 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188204/ERR188204_2.fastq.gz 0c7f9166482fef73e2e5a21f63e9e59a Geuvadis sequence mRNA NA20524 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188118/ERR188118_2.fastq.gz 5601d44aafcb1af0c2788e64f90a37d7 Geuvadis sequence mRNA HG00181 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188118/ERR188118_1.fastq.gz 9e5d7d50aa45d85fdfdb96f2f5e27cbb Geuvadis sequence mRNA HG00181 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188081/ERR188081_2.fastq.gz 529a1515df4bde03bab7ad7a42f1e1dc Geuvadis sequence mRNA NA12814 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188061/ERR188061_1.fastq.gz 2f48c2eaa43b5457e546d7f9a9b892b0 Geuvadis sequence mRNA NA12761 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188035/ERR188035_1.fastq.gz 6f87346d29cb0fe1572745d5b29a7ad7 Geuvadis sequence mRNA HG00123 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188409/ERR188409_1.fastq.gz f07f299de263964511203f1a0a1f5432 Geuvadis sequence mRNA NA18923 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188180/ERR188180_2.fastq.gz b9f7dd776004629237a466bb60820117 Geuvadis sequence mRNA HG00177 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188312/ERR188312_2.fastq.gz dcdf0504011c4dddf6451d8ca246321c Geuvadis sequence mRNA HG00233 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188324/ERR188324_2.fastq.gz c9bc91f3c255b377c36be1ab1c7a139d Geuvadis sequence mRNA NA07347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188138/ERR188138_2.fastq.gz 88e4933512f72edf1e360e51a2a5097e Geuvadis sequence mRNA NA20539 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188229/ERR188229_2.fastq.gz 142637bb4e53d0552c1db94dde27a109 Geuvadis sequence mRNA NA12044 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188389/ERR188389_2.fastq.gz c91446d4654cc1f327d270149bb2a543 Geuvadis sequence mRNA NA10851 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188451/ERR188451_2.fastq.gz f7b23e208ffec29928c0692496074a18 Geuvadis sequence mRNA NA19149 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188309/ERR188309_1.fastq.gz 32f52fc5b5030835e1e97b4449bf82d5 Geuvadis sequence mRNA HG00150 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188147/ERR188147_1.fastq.gz 429e408aef08908705d3075214d7db6d Geuvadis sequence mRNA NA20804 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188389/ERR188389_1.fastq.gz 5cb8f7b9dcc829ebdc15ae1e82a921ee Geuvadis sequence mRNA NA10851 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188103/ERR188103_2.fastq.gz f02fd69670dd92c744e4f24e1620cdee Geuvadis sequence mRNA NA19184 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188180/ERR188180_1.fastq.gz 62ab2afecf180f1da523b203616f5d7a Geuvadis sequence mRNA HG00177 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188035/ERR188035_2.fastq.gz e1c45de3089a8a0fa6095acf67a90490 Geuvadis sequence mRNA HG00123 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188078/ERR188078_1.fastq.gz 376eb5131f5ffd16e07ee6f605659e18 Geuvadis sequence mRNA HG00372 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188204/ERR188204_1.fastq.gz 1c8e68ce95ad94bdcda3069c9e6694cb Geuvadis sequence mRNA NA20524 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188109/ERR188109_2.fastq.gz 22802e9f535a83017bbd0155f91b567f Geuvadis sequence mRNA NA19121 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188061/ERR188061_2.fastq.gz 6facf7fd65abadf9a9682c0ce5fe1642 Geuvadis sequence mRNA NA12761 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188138/ERR188138_1.fastq.gz a9022709aa20815734c39352067e6744 Geuvadis sequence mRNA NA20539 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188105/ERR188105_1.fastq.gz cadd1af92f4004fb9c8611777383917f Geuvadis sequence mRNA NA20768 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188480/ERR188480_2.fastq.gz 8738217a0fb0777577ca57d0e31f607b Geuvadis sequence mRNA HG00362 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188480/ERR188480_1.fastq.gz 7e82f5144566a68cb7d5f151c122b02c Geuvadis sequence mRNA HG00362 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188103/ERR188103_1.fastq.gz aa192d93ef9c7732e8a9813d6101f6c4 Geuvadis sequence mRNA NA19184 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188117/ERR188117_2.fastq.gz 20524c0b91ee8755fa9a03df6b2a0724 Geuvadis sequence mRNA HG00268 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188073/ERR188073_1.fastq.gz 085b4b8639b62abd27d718f80b16d2ff Geuvadis sequence mRNA HG00145 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188147/ERR188147_2.fastq.gz ddd3f666f69f8f18aae96ea3e6bb5c84 Geuvadis sequence mRNA NA20804 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188116/ERR188116_1.fastq.gz b236e3c76d0b8aaca13030aac10b53d0 Geuvadis sequence mRNA HG00151 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188109/ERR188109_1.fastq.gz c348b71a3392108e740613cc8801a57e Geuvadis sequence mRNA NA19121 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188078/ERR188078_2.fastq.gz b8485b002f789a9a7c6e66a52442cac3 Geuvadis sequence mRNA HG00372 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188041/ERR188041_1.fastq.gz f6fab86a9c73d65d2011f8fe00730502 Geuvadis sequence mRNA HG00157 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188159/ERR188159_1.fastq.gz 49be691dcdae22d905a204193950efbf Geuvadis sequence mRNA HG00245 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188159/ERR188159_2.fastq.gz 0d4dfc0353454bb8415ccad4bc3b4f04 Geuvadis sequence mRNA HG00245 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188309/ERR188309_2.fastq.gz d703307a6caa531fba5e154a4e1ae169 Geuvadis sequence mRNA HG00150 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188253/ERR188253_2.fastq.gz fc298fbdc1286402794503e36d4abef5 Geuvadis sequence mRNA NA20808 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188222/ERR188222_2.fastq.gz de9f260ddb29565daabf7fceff8c4a5d Geuvadis sequence mRNA HG00265 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188245/ERR188245_1.fastq.gz 270b17765d0343ffc2e1ccc3a056809a Geuvadis sequence mRNA HG00128 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188245/ERR188245_2.fastq.gz a316911ac43247af802bfad97b868e3f Geuvadis sequence mRNA HG00128 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188116/ERR188116_2.fastq.gz 17a85aedf44f15b094b5741e6e7623b0 Geuvadis sequence mRNA HG00151 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188090/ERR188090_1.fastq.gz 2e3957a94f315d0e050b5263b66601ac Geuvadis sequence mRNA HG00186 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188306/ERR188306_1.fastq.gz d0eecf625fd998d7921115d4dc651330 Geuvadis sequence mRNA NA19138 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188105/ERR188105_2.fastq.gz 013180e87c2a31ce578857d55a26dd58 Geuvadis sequence mRNA NA20768 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188281/ERR188281_2.fastq.gz e536adb88e6ee4bff0bf10457825a478 Geuvadis sequence mRNA NA20801 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188117/ERR188117_1.fastq.gz d69a36e6546889fffb700a487a891d5d Geuvadis sequence mRNA HG00268 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188073/ERR188073_2.fastq.gz 3da0c5e8c9e70e458cf15ed0dfc03816 Geuvadis sequence mRNA HG00145 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188139/ERR188139_2.fastq.gz 5ff63e60a483632cef582ad16d0de2f0 Geuvadis sequence mRNA NA18917 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188456/ERR188456_1.fastq.gz 03a41ae3dde8660c6c7612a9f2c612ce Geuvadis sequence mRNA HG00249 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188456/ERR188456_2.fastq.gz 9e72669a8953f2579729eaaa3e69de0a Geuvadis sequence mRNA HG00249 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188281/ERR188281_1.fastq.gz a96d03ad1dcb05d43184264a2e59fd09 Geuvadis sequence mRNA NA20801 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188208/ERR188208_1.fastq.gz 668cd4c0662a760c623c0868c096d629 Geuvadis sequence mRNA NA20538 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188213/ERR188213_1.fastq.gz 9dd27fce46f88b6c95a6c6660f01470d Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188041/ERR188041_2.fastq.gz 56c4ec5e35f1f700bd94040e121578c3 Geuvadis sequence mRNA HG00157 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188200/ERR188200_1.fastq.gz 7e6b71bf8577114264bd8b8d02c2fcf5 Geuvadis sequence mRNA NA18519 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188253/ERR188253_1.fastq.gz 6bc8bac9697165c67d7f0f1ab2e47d8a Geuvadis sequence mRNA NA20808 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188306/ERR188306_2.fastq.gz 21e2568033a856b265350ed7368f0f2c Geuvadis sequence mRNA NA19138 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188056/ERR188056_2.fastq.gz 4dc9d9a0f5a9e418fbd0dc1a986a7116 Geuvadis sequence mRNA HG00331 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188222/ERR188222_1.fastq.gz 71db226ecd1a521428179bc750141ec9 Geuvadis sequence mRNA HG00265 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188054/ERR188054_1.fastq.gz 82d38911bc84098b0451cf52fbb9473d Geuvadis sequence mRNA NA20752 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188090/ERR188090_2.fastq.gz 77e78827c2c21bc032d86cade85b2195 Geuvadis sequence mRNA HG00186 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188293/ERR188293_1.fastq.gz b8e1bfbfa10c6494e999bb32fd833286 Geuvadis sequence mRNA HG00116 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188410/ERR188410_1.fastq.gz 2611b9fbc7de5f39d095c571bb6da789 Geuvadis sequence mRNA NA12156 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188054/ERR188054_2.fastq.gz 1e3afeda1102bb752aa38052ba0a65c5 Geuvadis sequence mRNA NA20752 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188343/ERR188343_2.fastq.gz 04c075e6c50554caac74bbbc6703dcdc Geuvadis sequence mRNA NA20589 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188200/ERR188200_2.fastq.gz 3905eadb6acdcba10e9743b37f7e992c Geuvadis sequence mRNA NA18519 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188213/ERR188213_2.fastq.gz d64d8c1fa78e4af445ce433fe1436600 Geuvadis sequence mRNA NA06986 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188042/ERR188042_1.fastq.gz bb58f56432dfaaefa6b474c89070d704 Geuvadis sequence mRNA NA19204 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188139/ERR188139_1.fastq.gz 17733cd8a8eb8b618e76c370ed6ddf68 Geuvadis sequence mRNA NA18917 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188153/ERR188153_2.fastq.gz 42ccc52eaa45dfb5494c6d7ab13984b3 Geuvadis sequence mRNA NA20765 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188208/ERR188208_2.fastq.gz 69da35fe310e132188c74e5824aa177c Geuvadis sequence mRNA NA20538 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188056/ERR188056_1.fastq.gz 15c9df2da6b3522259f88d477df1e403 Geuvadis sequence mRNA HG00331 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188285/ERR188285_1.fastq.gz f8663e79f4cd146980e2f333ce6a4175 Geuvadis sequence mRNA HG00122 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188076/ERR188076_1.fastq.gz 12c3aaa577eb096c4400325f24fddca8 Geuvadis sequence mRNA NA12006 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188076/ERR188076_2.fastq.gz f0f4992309f230a7bf0ad9e63b1e5f78 Geuvadis sequence mRNA NA12006 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188343/ERR188343_1.fastq.gz d8808eccb225669cf7cd2a11c481bdad Geuvadis sequence mRNA NA20589 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188037/ERR188037_2.fastq.gz 616bb2b0575c586384a6ca7c278f9464 Geuvadis sequence mRNA NA19236 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188048/ERR188048_1.fastq.gz 296d0a8ef3c41db07c8dac90b81d92e8 Geuvadis sequence mRNA NA12489 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188410/ERR188410_2.fastq.gz 92cde42d22dab6eed7803e2aad996255 Geuvadis sequence mRNA NA12156 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188399/ERR188399_1.fastq.gz 0fa7c50181169755cd861fad9aa9568c Geuvadis sequence mRNA NA20531 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188153/ERR188153_1.fastq.gz c24f1370252d9470feabcd3aa0a11fba Geuvadis sequence mRNA NA20765 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188042/ERR188042_2.fastq.gz d67ac97221081268d552ce11e35efe4a Geuvadis sequence mRNA NA19204 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188266/ERR188266_2.fastq.gz d7f155359b2b0c6818d44c40b47a44fb Geuvadis sequence mRNA HG00282 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188144/ERR188144_2.fastq.gz 2b1df09efd3605bab36a2f2fa22f364d Geuvadis sequence mRNA HG00139 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188144/ERR188144_1.fastq.gz 49e42b780f564256987e7af66622b754 Geuvadis sequence mRNA HG00139 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188293/ERR188293_2.fastq.gz 0fdf23ce93154445f6c9bd9238a4da5a Geuvadis sequence mRNA HG00116 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188362/ERR188362_1.fastq.gz 48fa85b968437a856ed3f64abab30d2e Geuvadis sequence mRNA HG00371 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188148/ERR188148_1.fastq.gz 620b4d0926e726e6eea1b63652fc600b Geuvadis sequence mRNA NA12282 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188283/ERR188283_1.fastq.gz 74a24296eba8ec303bbee37dbe8389f4 Geuvadis sequence mRNA NA18907 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188283/ERR188283_2.fastq.gz af126912b7c49738ec4da16f4b09e962 Geuvadis sequence mRNA NA18907 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188399/ERR188399_2.fastq.gz f3b93a85814b0836e686e0bc3aba66cb Geuvadis sequence mRNA NA20531 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188429/ERR188429_1.fastq.gz 7cf22bc2c759af35e738721c10ed8297 Geuvadis sequence mRNA NA12889 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188313/ERR188313_1.fastq.gz cf6f2688e2a1942605fbfceb265b9999 Geuvadis sequence mRNA NA18873 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188285/ERR188285_2.fastq.gz e49570185096672e5c5a445ba565fac9 Geuvadis sequence mRNA HG00122 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188140/ERR188140_2.fastq.gz d369863e1905c54f6f9fcc8af2e94fc9 Geuvadis sequence mRNA NA12716 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188037/ERR188037_1.fastq.gz cdc322fdd07369384c48ce913df45143 Geuvadis sequence mRNA NA19236 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188266/ERR188266_1.fastq.gz 64c6dfa717bf034549ba12490ac0df18 Geuvadis sequence mRNA HG00282 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188252/ERR188252_2.fastq.gz c3c6673f9d18c5edf4cf4051a4703594 Geuvadis sequence mRNA NA20544 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188048/ERR188048_2.fastq.gz 9f4a80da2f0d5b03b25ab88eb3be8094 Geuvadis sequence mRNA NA12489 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188375/ERR188375_1.fastq.gz ae31a448bfc1327307db4bcd210b3577 Geuvadis sequence mRNA NA18858 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188140/ERR188140_1.fastq.gz b7b1e35964c3460df9b8781901bd8730 Geuvadis sequence mRNA NA12716 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188148/ERR188148_2.fastq.gz d33f10288f03f047d0eb843a59637022 Geuvadis sequence mRNA NA12282 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188372/ERR188372_2.fastq.gz ee9a6976833ba908eb5fe5433be27ef4 Geuvadis sequence mRNA NA20807 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188072/ERR188072_1.fastq.gz 6bda498c7f84e5976750dd19b79844ab Geuvadis sequence mRNA NA19137 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188072/ERR188072_2.fastq.gz e6fa6acca5b296541e349fc87445df52 Geuvadis sequence mRNA NA19137 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188362/ERR188362_2.fastq.gz d7d45074673af53fb05b18477975e91c Geuvadis sequence mRNA HG00371 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188270/ERR188270_1.fastq.gz bdb1c78d214da8faa3ec04e25d4fa4b3 Geuvadis sequence mRNA HG00342 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188202/ERR188202_2.fastq.gz edcf4c7381900df9cd16123119ef5df8 Geuvadis sequence mRNA NA06989 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188313/ERR188313_2.fastq.gz 8b56bc582c98cab190b8479d88fe4228 Geuvadis sequence mRNA NA18873 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188240/ERR188240_1.fastq.gz 8efdd4b6df7453fecafc8ec1c7c865d2 Geuvadis sequence mRNA HG00306 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188375/ERR188375_2.fastq.gz ebdf651d1502d5d4ae7735f64a26dc59 Geuvadis sequence mRNA NA18858 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188252/ERR188252_1.fastq.gz 1c29aac937e52c55f7483bd6f2e6e2c7 Geuvadis sequence mRNA NA20544 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188044/ERR188044_1.fastq.gz 75d29217a2477c91bde22d6e71c61df0 Geuvadis sequence mRNA NA18498 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188069/ERR188069_1.fastq.gz ab3e97cb6c014fa994db3a45fd5aa92c Geuvadis sequence mRNA NA19096 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188069/ERR188069_2.fastq.gz 1eaa08a41c33d498001bd69986ff3bdd Geuvadis sequence mRNA NA19096 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188429/ERR188429_2.fastq.gz c74e43baa4f84a1c3b9154fd7cb91580 Geuvadis sequence mRNA NA12889 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188029/ERR188029_2.fastq.gz b4da7a93d7228dede903f3e95cf67198 Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188162/ERR188162_1.fastq.gz 145f3f318ae0e9c13a2fd7975f064283 Geuvadis sequence mRNA NA18508 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188423/ERR188423_1.fastq.gz 2da5379acee064439eaf1db36ede9e6a Geuvadis sequence mRNA NA19107 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188423/ERR188423_2.fastq.gz 9f3631d249e33330266c52e4b802c12a Geuvadis sequence mRNA NA19107 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188240/ERR188240_2.fastq.gz 70f3128e11649c0d1253de4c1e6ee719 Geuvadis sequence mRNA HG00306 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188425/ERR188425_1.fastq.gz ece0e4856ef299ed38ef208d5597f7de Geuvadis sequence mRNA HG00187 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188203/ERR188203_2.fastq.gz 9c56f9f5f176e06090153b80c2b01e85 Geuvadis sequence mRNA NA20542 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188372/ERR188372_1.fastq.gz e86f71cbda5dbbdc477734514988400d Geuvadis sequence mRNA NA20807 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188058/ERR188058_1.fastq.gz 5e0341d459655bff014b86c497e1cc1d Geuvadis sequence mRNA NA12005 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188270/ERR188270_2.fastq.gz c2141f351a7613da83a6900680a5d5eb Geuvadis sequence mRNA HG00342 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188202/ERR188202_1.fastq.gz 6f90c78e518a6999a42503e4fb8f93f7 Geuvadis sequence mRNA NA06989 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188214/ERR188214_2.fastq.gz 9bc1148ac0154b4cb9b910489362f0bf Geuvadis sequence mRNA NA18486 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188216/ERR188216_2.fastq.gz d5ca43f97c2e9c476b25b1a0ee30cf0a Geuvadis sequence mRNA NA12873 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188216/ERR188216_1.fastq.gz e731adb726f096bfe3b3f9aa6b2596b1 Geuvadis sequence mRNA NA12873 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188058/ERR188058_2.fastq.gz 33f1f2cc357364e5c4df1844928a4962 Geuvadis sequence mRNA NA12005 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188068/ERR188068_2.fastq.gz e39a76e1d968ec53d0d1c12652eb27e8 Geuvadis sequence mRNA NA20759 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188190/ERR188190_1.fastq.gz d929459c0c865998cf7706f4d9a37ed0 Geuvadis sequence mRNA HG00171 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188044/ERR188044_2.fastq.gz 3d2a3ace20342c37436b231d7bfee635 Geuvadis sequence mRNA NA18498 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188373/ERR188373_1.fastq.gz 2409bb6d3efdfd92d37619c85b012a71 Geuvadis sequence mRNA NA18870 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188029/ERR188029_1.fastq.gz 222f10a7aee0391075a8602ee55dc33d Geuvadis sequence mRNA HG00355 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188203/ERR188203_1.fastq.gz 92a856e1bd65866ecfc21ce9f839c3c3 Geuvadis sequence mRNA NA20542 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188095/ERR188095_1.fastq.gz 471cd0a784f653b3f175a9ebe9136c9e Geuvadis sequence mRNA HG00137 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188162/ERR188162_2.fastq.gz 5ce768e170188da650db0e98881296c4 Geuvadis sequence mRNA NA18508 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188367/ERR188367_2.fastq.gz 6723b4c8bbc537929516aa976d293866 Geuvadis sequence mRNA NA19102 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188425/ERR188425_2.fastq.gz a511359cb161e3d9e6897cae18090d28 Geuvadis sequence mRNA HG00187 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188416/ERR188416_2.fastq.gz ada1452a93ec48863492b825e2c8425e Geuvadis sequence mRNA HG00102 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188126/ERR188126_1.fastq.gz f69dc0c558436a06811f224f8c5606a4 Geuvadis sequence mRNA NA20766 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188367/ERR188367_1.fastq.gz e366461eb02b5f54ab6ef2b466372a37 Geuvadis sequence mRNA NA19102 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188173/ERR188173_2.fastq.gz 00c59f020fd4f4350772a0c3f936176d Geuvadis sequence mRNA NA20785 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188373/ERR188373_2.fastq.gz c95508c6b31210f1dde68c4705b6df73 Geuvadis sequence mRNA NA18870 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188190/ERR188190_2.fastq.gz c94ffb9dddf144e89cfc9c37b7af5239 Geuvadis sequence mRNA HG00171 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188392/ERR188392_2.fastq.gz e4300cdce08f80494c0b5fda953f1a64 Geuvadis sequence mRNA NA19210 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188214/ERR188214_1.fastq.gz ff5ab8aa77fc91e394f3dd3121feb975 Geuvadis sequence mRNA NA18486 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188322/ERR188322_2.fastq.gz c8684361ec3dbbb2d82ce0c1f1d0d493 Geuvadis sequence mRNA NA19190 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188068/ERR188068_1.fastq.gz d445ec1c4443bf7abd3dd40dfdddaf36 Geuvadis sequence mRNA NA20759 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188095/ERR188095_2.fastq.gz 4819f2021204e5043b2b2e603650be3e Geuvadis sequence mRNA HG00137 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188276/ERR188276_2.fastq.gz 7035619f2b88f1dc9e64b4c457a33ebb Geuvadis sequence mRNA NA20758 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188274/ERR188274_1.fastq.gz 8abbc37b362753d8a472f0d7017aa8e5 Geuvadis sequence mRNA HG00277 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188274/ERR188274_2.fastq.gz 153fcfa0cb80a123cde8392574f0a911 Geuvadis sequence mRNA HG00277 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188173/ERR188173_1.fastq.gz 186de78f90d26f33876f1893dd7de588 Geuvadis sequence mRNA NA20785 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188022/ERR188022_2.fastq.gz c91d541f18c6b30bf97f927dec1dc08c Geuvadis sequence mRNA NA12812 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188026/ERR188026_1.fastq.gz 5fd42c5e9889ac6f30259c04848c8ffb Geuvadis sequence mRNA NA20510 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188126/ERR188126_2.fastq.gz 9f0561e98fb54d6bdc809a8c014ec6de Geuvadis sequence mRNA NA20766 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188296/ERR188296_1.fastq.gz dd9ac3dbf4949817585a6c748fd3d9b8 Geuvadis sequence mRNA HG00330 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188322/ERR188322_1.fastq.gz 47315523e6a2fbcf7686e6f2891770a8 Geuvadis sequence mRNA NA19190 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188392/ERR188392_1.fastq.gz cf457ccb2dcb37177c90948c3fd50fe5 Geuvadis sequence mRNA NA19210 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188407/ERR188407_2.fastq.gz 4536ac445ab54187aed58de54983a524 Geuvadis sequence mRNA HG01790 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188113/ERR188113_2.fastq.gz fb533795e31d2a2bcda11434967ac71b Geuvadis sequence mRNA HG00324 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188113/ERR188113_1.fastq.gz f401fcf5f4b8ab4b8465a2c3baf65675 Geuvadis sequence mRNA HG00324 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188416/ERR188416_1.fastq.gz 0e32bc15347b4a23eebac1ddc02fc84c Geuvadis sequence mRNA HG00102 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188433/ERR188433_2.fastq.gz 3d4266055982ee0c775ebad4e700adcc Geuvadis sequence mRNA NA11829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188398/ERR188398_2.fastq.gz 1b7208447940418876b0da5e76d3451f Geuvadis sequence mRNA NA20535 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188082/ERR188082_2.fastq.gz bb97ce83314deebad88ac82e4bf1e0db Geuvadis sequence mRNA HG00110 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188082/ERR188082_1.fastq.gz 83db6093dad2c2ba2a49db2ea2368e81 Geuvadis sequence mRNA HG00110 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188296/ERR188296_2.fastq.gz dabae283f4f7a32e641174c26c2e5e2f Geuvadis sequence mRNA HG00330 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188435/ERR188435_2.fastq.gz b2a833b8c96bba6f568445f51a04e89c Geuvadis sequence mRNA NA11830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188307/ERR188307_1.fastq.gz d55e80fea5634e9a0841b7da8b471cf9 Geuvadis sequence mRNA HG00101 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188276/ERR188276_1.fastq.gz 8e590527dcced1fc3fbce3abfca0501e Geuvadis sequence mRNA NA20758 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188337/ERR188337_1.fastq.gz 3ebf5243a92e8c8e434f006be8269718 Geuvadis sequence mRNA HG00127 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188022/ERR188022_1.fastq.gz 9fabad7e2b8d6c7b441ff9fcccbf639c Geuvadis sequence mRNA NA12812 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188026/ERR188026_2.fastq.gz 2f03cfb4d272170d0d6451523e37569c Geuvadis sequence mRNA NA20510 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188063/ERR188063_1.fastq.gz 56e292173e38a1444d03f5a4c4894f25 Geuvadis sequence mRNA NA20509 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188377/ERR188377_1.fastq.gz 74e23bf32b4a7a8712fb328ad2547ecc Geuvadis sequence mRNA NA12045 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188377/ERR188377_2.fastq.gz fddebb1ca138441312e30b500df2b607 Geuvadis sequence mRNA NA12045 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188337/ERR188337_2.fastq.gz aa115f229cd36f9782abd072c85c39c4 Geuvadis sequence mRNA HG00127 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188342/ERR188342_2.fastq.gz 969865d0fb5b79d22507adac447c2957 Geuvadis sequence mRNA HG00111 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188071/ERR188071_2.fastq.gz 879f4dda98969faf1226309bc714e1c5 Geuvadis sequence mRNA HG00114 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188407/ERR188407_1.fastq.gz 1467a0598a473af6672ebc01979ff0d3 Geuvadis sequence mRNA HG01790 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188440/ERR188440_1.fastq.gz 6f9eb39f12216f2dc98cb46218e70165 Geuvadis sequence mRNA NA19200 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188433/ERR188433_1.fastq.gz 3bff3de73a53359120d4b005d4404f42 Geuvadis sequence mRNA NA11829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188307/ERR188307_2.fastq.gz 248f1920c2ea84daf2d5aaa18bc666dc Geuvadis sequence mRNA HG00101 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188247/ERR188247_2.fastq.gz 68fbbd42e5d6679ee14afac0657acafc Geuvadis sequence mRNA HG00104 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188398/ERR188398_1.fastq.gz ebd43fd427ddac697152b771c23fb31f Geuvadis sequence mRNA NA20535 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188369/ERR188369_2.fastq.gz 7021ae7e80582d86254048dd1dd0ba54 Geuvadis sequence mRNA NA20512 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188435/ERR188435_1.fastq.gz 1ebb7e4bbe5da11d15f28a247b5d2891 Geuvadis sequence mRNA NA11830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188257/ERR188257_2.fastq.gz d3d3a116947ab3a8f6fa71485795bdfc Geuvadis sequence mRNA HG00143 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188236/ERR188236_2.fastq.gz b02266c9e1cfbfd9615a0e2e4924839d Geuvadis sequence mRNA HG00118 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188369/ERR188369_1.fastq.gz 4cb84149a0b9d1c4ba4301c28a8acb28 Geuvadis sequence mRNA NA20512 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188316/ERR188316_1.fastq.gz 55b82ab42fee349e93afaa6814a8f306 Geuvadis sequence mRNA NA20796 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188440/ERR188440_2.fastq.gz a9b833528195b4dac8c4da563621f264 Geuvadis sequence mRNA NA19200 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188063/ERR188063_2.fastq.gz addfb312a4eb00306fd173f78868b147 Geuvadis sequence mRNA NA20509 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188476/ERR188476_1.fastq.gz 80fe7d207e98480c777f860131eaf214 Geuvadis sequence mRNA NA19093 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188119/ERR188119_1.fastq.gz 11cdd48d79a4e46edf30d3321ef53a8c Geuvadis sequence mRNA HG00119 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188119/ERR188119_2.fastq.gz a398dc3951d9e8178e41b990de777d70 Geuvadis sequence mRNA HG00119 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188342/ERR188342_1.fastq.gz fff471fb3f80bf2674b02529289e3817 Geuvadis sequence mRNA HG00111 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188242/ERR188242_1.fastq.gz 9395dbcb1e1e63799bbe5090eb137e92 Geuvadis sequence mRNA HG00258 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188463/ERR188463_2.fastq.gz fbd4346ba8945654874192ffc17d7375 Geuvadis sequence mRNA NA19247 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188071/ERR188071_1.fastq.gz e2a5268509deb0b45454f805de0438d3 Geuvadis sequence mRNA HG00114 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188036/ERR188036_2.fastq.gz a0c7dd4d346ba61c2488e7136575f765 Geuvadis sequence mRNA HG00236 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188316/ERR188316_2.fastq.gz 8512188d3ab0b47384948c80641bdf23 Geuvadis sequence mRNA NA20796 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188236/ERR188236_1.fastq.gz fe28b90a4e5226edbb89065b180d510a Geuvadis sequence mRNA HG00118 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188385/ERR188385_2.fastq.gz f7437b1eb5109ff857d96b3fbe7695cc Geuvadis sequence mRNA HG00138 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188247/ERR188247_1.fastq.gz b4275e2663a92163514e9c00d65e46c6 Geuvadis sequence mRNA HG00104 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188327/ERR188327_2.fastq.gz 489b445a6feca2fa9c64acb4f020679e Geuvadis sequence mRNA NA06985 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188257/ERR188257_1.fastq.gz f4135e071333704636abeb38022e5ae9 Geuvadis sequence mRNA HG00143 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188199/ERR188199_2.fastq.gz 6a51ccc78eee24c97a379066490cb668 Geuvadis sequence mRNA NA20585 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188361/ERR188361_2.fastq.gz 0530bc499fcf94a5e51789d03cd8a115 Geuvadis sequence mRNA HG00189 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188327/ERR188327_1.fastq.gz 207cc4c439c6f0b69f488998fcadf42e Geuvadis sequence mRNA NA06985 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188201/ERR188201_1.fastq.gz 4f07bfcc996c9231ccbb0e143e756b44 Geuvadis sequence mRNA NA20588 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188036/ERR188036_1.fastq.gz 40fc557e3730d45dfe073795c40b8a60 Geuvadis sequence mRNA HG00236 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188463/ERR188463_1.fastq.gz 5806f9b4613379f0eeabee1608827ed2 Geuvadis sequence mRNA NA19247 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188128/ERR188128_1.fastq.gz 0b7bcf16ea6d2d00c79ed13dc921401f Geuvadis sequence mRNA NA19092 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188476/ERR188476_2.fastq.gz 4ce9bceb9a6c2e70d8adb9431217fc98 Geuvadis sequence mRNA NA19093 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188087/ERR188087_1.fastq.gz ebe290bc8f87db17ec842e2442d1cd58 Geuvadis sequence mRNA HG00121 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188242/ERR188242_2.fastq.gz 88fdecf74ffd4fc35e533651f79cfce7 Geuvadis sequence mRNA HG00258 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188385/ERR188385_1.fastq.gz 0e2274bc2b67d9cd355f14cb0fcf117c Geuvadis sequence mRNA HG00138 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188439/ERR188439_1.fastq.gz 4157fe506b0f1c32a3c17a5d17254cd9 Geuvadis sequence mRNA HG00329 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188163/ERR188163_2.fastq.gz 09df7dcfe00e6385fb0aa20d76a31435 Geuvadis sequence mRNA HG00174 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188163/ERR188163_1.fastq.gz cc85c3e332d1f858edf6f16fcf8aadbb Geuvadis sequence mRNA HG00174 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188201/ERR188201_2.fastq.gz 47c7dd2920a4318cb30a8286389a91ad Geuvadis sequence mRNA NA20588 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188357/ERR188357_1.fastq.gz f63890afcf653953cd05594bc687abdd Geuvadis sequence mRNA NA20517 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188091/ERR188091_2.fastq.gz bbdd9c02292e68c364571cafef8ed12e Geuvadis sequence mRNA HG00256 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188361/ERR188361_1.fastq.gz c8e1504f048af61be9c0ffbfa1e0bae8 Geuvadis sequence mRNA HG00189 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188169/ERR188169_1.fastq.gz 440cb933091023733707b65b32483195 Geuvadis sequence mRNA HG00338 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188087/ERR188087_2.fastq.gz 684481601af816d0cf42be2808eb67aa Geuvadis sequence mRNA HG00121 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188128/ERR188128_2.fastq.gz d7541e5da86e45800221323c33c2b43a Geuvadis sequence mRNA NA19092 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188112/ERR188112_1.fastq.gz 0f36f3a17e78e92881b9b839bd9c5af7 Geuvadis sequence mRNA HG00239 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188034/ERR188034_2.fastq.gz e93cacaa654547c27a6b355b5f8aab92 Geuvadis sequence mRNA HG00273 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188034/ERR188034_1.fastq.gz ac2e4353b40885e7dbfa5253a32a97fd Geuvadis sequence mRNA HG00273 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188199/ERR188199_1.fastq.gz 7e049e1cb9a8832bce9d0c11267e8959 Geuvadis sequence mRNA NA20585 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188189/ERR188189_1.fastq.gz bdb009a70d9ea49e34391688eb6e72f9 Geuvadis sequence mRNA HG00133 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188269/ERR188269_1.fastq.gz bb93c64dc0aa372aac39c58d796c3290 Geuvadis sequence mRNA NA18916 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188152/ERR188152_2.fastq.gz cbd5026b8c9c06929c96e69e36da27b2 Geuvadis sequence mRNA NA12751 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188152/ERR188152_1.fastq.gz 15ad7e6f24523c1700f14d873c8a77cb Geuvadis sequence mRNA NA12751 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188169/ERR188169_2.fastq.gz 5dd9249d983f8efaabb88158b337603f Geuvadis sequence mRNA HG00338 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188157/ERR188157_1.fastq.gz d0a1ebd276928667863a307fbb955873 Geuvadis sequence mRNA NA12872 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188415/ERR188415_1.fastq.gz d7469ab2593a2570904e087590ac9847 Geuvadis sequence mRNA NA12058 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188439/ERR188439_2.fastq.gz 345a305479a1a4770fd27f12e8bd9c28 Geuvadis sequence mRNA HG00329 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188442/ERR188442_2.fastq.gz 551af19dff42cac451ecb209f316f877 Geuvadis sequence mRNA NA18910 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188357/ERR188357_2.fastq.gz d33df405cff6c82a5c6f329b28b372ce Geuvadis sequence mRNA NA20517 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188091/ERR188091_1.fastq.gz bf9187e3e3da1800c2798170cdde39b0 Geuvadis sequence mRNA HG00256 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188227/ERR188227_2.fastq.gz 018c28d20a2c8751fa8a66724546de17 Geuvadis sequence mRNA NA12874 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188320/ERR188320_1.fastq.gz dedf60a38a4aa8931b48e06abc3d6722 Geuvadis sequence mRNA HG00185 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188320/ERR188320_2.fastq.gz 61ff64e55c73f62547ab8dc67bbeb92c Geuvadis sequence mRNA HG00185 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188442/ERR188442_1.fastq.gz 3913b582105d8b8425841c68ee03e084 Geuvadis sequence mRNA NA18910 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188311/ERR188311_2.fastq.gz 5e9f7b204022f25794dd7369ba33182a Geuvadis sequence mRNA NA18488 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188241/ERR188241_1.fastq.gz 37dbc73c7fee902e24fa6ea821f07805 Geuvadis sequence mRNA HG00356 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188112/ERR188112_2.fastq.gz 4cd137755baab68868ff04c67a618873 Geuvadis sequence mRNA HG00239 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188059/ERR188059_1.fastq.gz 4f496f38c9991c5dcb290c637b9f363d Geuvadis sequence mRNA HG00125 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188189/ERR188189_2.fastq.gz 32cc9db2cb288bfd1b2b1402241d348b Geuvadis sequence mRNA HG00133 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188415/ERR188415_2.fastq.gz 5e43d58d41e675ce6e8ab76effe0973f Geuvadis sequence mRNA NA12058 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188287/ERR188287_2.fastq.gz 2b49b256785ded9c40f6f0a66ae5741a Geuvadis sequence mRNA HG00156 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188269/ERR188269_2.fastq.gz 79cd51f89676efa65ba12d0e41a269ff Geuvadis sequence mRNA NA18916 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188355/ERR188355_1.fastq.gz 334d493f3bd0d9f1fb2fb0be888ba502 Geuvadis sequence mRNA HG00267 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188157/ERR188157_2.fastq.gz 8f3070bc6da336c9bb393e888218e89c Geuvadis sequence mRNA NA12872 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188365/ERR188365_1.fastq.gz 670b1a5294697f5038d21f13a6a696e7 Geuvadis sequence mRNA NA19117 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188234/ERR188234_1.fastq.gz 985882e1f9435668914bebd4669f47a1 Geuvadis sequence mRNA NA19116 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188355/ERR188355_2.fastq.gz 85e01edbfa9cb9fd16749b2390c3cfff Geuvadis sequence mRNA HG00267 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188124/ERR188124_2.fastq.gz f7d5ece703ea1251192c6c9a4fc67894 Geuvadis sequence mRNA HG00351 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188059/ERR188059_2.fastq.gz 989d24967199dfe76b54907585ee2f34 Geuvadis sequence mRNA HG00125 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188241/ERR188241_2.fastq.gz 42e15acc532767f67849108d0fa38cd9 Geuvadis sequence mRNA HG00356 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188282/ERR188282_1.fastq.gz 6541459b7d0a0b8dd24db96dce769738 Geuvadis sequence mRNA NA20809 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188227/ERR188227_1.fastq.gz f9844024eef19ac89444c31b9b741ce0 Geuvadis sequence mRNA NA12874 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188066/ERR188066_2.fastq.gz 5722ecd6e0ddfd5261e06bb0036a9556 Geuvadis sequence mRNA NA19118 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188311/ERR188311_1.fastq.gz 86029d5f7a0e4cf94392babc3cbbd573 Geuvadis sequence mRNA NA18488 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188287/ERR188287_1.fastq.gz 4bcba45cc9085dd2612a7bc9fe6377c7 Geuvadis sequence mRNA HG00156 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188065/ERR188065_2.fastq.gz 5de44bdb5011ff2bccf5415b0a7ecc0c Geuvadis sequence mRNA HG00149 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188348/ERR188348_1.fastq.gz 91853f5e605d9f546e7a0bb059de4b58 Geuvadis sequence mRNA NA11995 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188348/ERR188348_2.fastq.gz 748101bd03d8238b8f48ba89ac5422e5 Geuvadis sequence mRNA NA11995 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188124/ERR188124_1.fastq.gz 5ccf2533907bcb21bcfb923a2da02466 Geuvadis sequence mRNA HG00351 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188230/ERR188230_1.fastq.gz c30409d44785bb95cbceb8e90baeef0f Geuvadis sequence mRNA HG00278 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188224/ERR188224_2.fastq.gz b1eeb7cb6901351b61d32b3c45b06f92 Geuvadis sequence mRNA NA20528 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188234/ERR188234_2.fastq.gz aac0c6a37f9d4219bb92280afc8655eb Geuvadis sequence mRNA NA19116 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188284/ERR188284_2.fastq.gz 0235a8f9aea476ba5a3f04eeea28db2a Geuvadis sequence mRNA NA19223 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188066/ERR188066_1.fastq.gz 0c5a5871f886bc53521cd89ed087c037 Geuvadis sequence mRNA NA19118 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188282/ERR188282_2.fastq.gz 8b11d7450f1effe49d2c99d6cd5acb59 Geuvadis sequence mRNA NA20809 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188070/ERR188070_1.fastq.gz d7795abc6d10e48a97a926ea2cea50ee Geuvadis sequence mRNA HG00263 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188086/ERR188086_1.fastq.gz cd57b6eff79a733fde6dd8df91b22c31 Geuvadis sequence mRNA NA11892 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188086/ERR188086_2.fastq.gz 6555a12285bea311802d95d5d2e6fbb7 Geuvadis sequence mRNA NA11892 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188365/ERR188365_2.fastq.gz 0df2f979d302710bbf1fa124efa92541 Geuvadis sequence mRNA NA19117 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188368/ERR188368_2.fastq.gz 82c9c7983d661d5b2a308dd14f4ad1be Geuvadis sequence mRNA HG00105 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188191/ERR188191_2.fastq.gz 899c51c7dbf53d44cfb7c72e718e57d4 Geuvadis sequence mRNA NA20770 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188464/ERR188464_1.fastq.gz a4ce2ec5eeaeba7134ab832cd20eefab Geuvadis sequence mRNA HG00252 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188464/ERR188464_2.fastq.gz 60ba317b8becfd553a43f3d30ca99549 Geuvadis sequence mRNA HG00252 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188284/ERR188284_1.fastq.gz 83aa97aa796758e1c9423370419cf9f1 Geuvadis sequence mRNA NA19223 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188224/ERR188224_1.fastq.gz 75860ae0ddeb818bc20233c9ebfe7750 Geuvadis sequence mRNA NA20528 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188360/ERR188360_2.fastq.gz 957ba6a2c610e4733684d6107507d2d8 Geuvadis sequence mRNA NA20787 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188065/ERR188065_1.fastq.gz 7788d2fd0fc8574c3462f83c8f769d31 Geuvadis sequence mRNA HG00149 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188408/ERR188408_2.fastq.gz 53750f293a5c8d6f2a79518df2e016e0 Geuvadis sequence mRNA NA20810 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188230/ERR188230_2.fastq.gz 8404b8494eeaf945aeb543781da804e2 Geuvadis sequence mRNA HG00278 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188211/ERR188211_2.fastq.gz ca37cb0011d1f641d76eb6693a3a1b67 Geuvadis sequence mRNA NA19175 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188027/ERR188027_1.fastq.gz 963996a56c4c133ce5001e720f45bba6 Geuvadis sequence mRNA NA07056 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188070/ERR188070_2.fastq.gz 216f7fe465ea981adffcafd59b6b3614 Geuvadis sequence mRNA HG00263 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188088/ERR188088_2.fastq.gz 72cf3e9570e01e78c79a9e91c90f743c Geuvadis sequence mRNA NA20504 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188408/ERR188408_1.fastq.gz d2b7d4763ae409cbbf0f09dc06538ee0 Geuvadis sequence mRNA NA20810 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188191/ERR188191_1.fastq.gz 417ed71267adf46c55a293d11a49c145 Geuvadis sequence mRNA NA20770 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188446/ERR188446_1.fastq.gz 80d5608d2894b6de50088bbe714109c1 Geuvadis sequence mRNA NA12347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188444/ERR188444_1.fastq.gz 188ee2f5b8ee22ad261a4518ec5833d1 Geuvadis sequence mRNA NA19129 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188444/ERR188444_2.fastq.gz e21d3d0a36a199bd673e5f7ccd544020 Geuvadis sequence mRNA NA19129 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188368/ERR188368_1.fastq.gz 5ecfe9af771887ae3db7380f79f8f64b Geuvadis sequence mRNA HG00105 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188158/ERR188158_1.fastq.gz 580443c6e0a41d297c8c02e2695d096a Geuvadis sequence mRNA NA18502 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188151/ERR188151_2.fastq.gz 248bbd62fcded8a2c9c648203a3bcae2 Geuvadis sequence mRNA NA18489 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188403/ERR188403_1.fastq.gz 51c6a61d7a8ce51cc3c5a9b1c26cf76c Geuvadis sequence mRNA HG00131 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188403/ERR188403_2.fastq.gz f620a5a9b15ff16e910ac5f6ca776a92 Geuvadis sequence mRNA HG00131 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188088/ERR188088_1.fastq.gz dd540a3e9fc477c78908d491cefbe3bb Geuvadis sequence mRNA NA20504 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188305/ERR188305_2.fastq.gz 48c83e9b8b58c84ac97c98733b9c536e Geuvadis sequence mRNA NA20773 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188164/ERR188164_2.fastq.gz 8053dfa74fe8236fa8cba65a379a5aef Geuvadis sequence mRNA HG00159 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188360/ERR188360_1.fastq.gz 84d1decda8ec4e38c8b0fb7eea54d34e Geuvadis sequence mRNA NA20787 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188280/ERR188280_2.fastq.gz c6f2281b1900448ccc3e2eb4a7f8b9d4 Geuvadis sequence mRNA HG00381 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188211/ERR188211_1.fastq.gz 18b3ca0d208191bee77e03265770c8a9 Geuvadis sequence mRNA NA19175 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188027/ERR188027_2.fastq.gz d847fbd5ed441a15095cd157b213ec75 Geuvadis sequence mRNA NA07056 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188354/ERR188354_1.fastq.gz 10c1e489d36e6ae680dd36f9ea9176e4 Geuvadis sequence mRNA NA12775 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188146/ERR188146_2.fastq.gz 16b0e3285bccb52da32c08dadfd8354a Geuvadis sequence mRNA HG00180 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188146/ERR188146_1.fastq.gz 284d1ee4e00282c18d136c0e08dafdc0 Geuvadis sequence mRNA HG00180 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188280/ERR188280_1.fastq.gz a777eacb2bfde347da0a6780dd9f65b4 Geuvadis sequence mRNA HG00381 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188371/ERR188371_2.fastq.gz b81c2f5f5d964bdd1dc66551cc91af78 Geuvadis sequence mRNA NA11920 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188243/ERR188243_2.fastq.gz 670be06b7fd98d42fc8c083c3a014c73 Geuvadis sequence mRNA NA19098 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188446/ERR188446_2.fastq.gz 639f7944724fe8d8dfdf4971c799af4d Geuvadis sequence mRNA NA12347 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188475/ERR188475_1.fastq.gz 4cace57e007057b9c8d6cf776aed3a73 Geuvadis sequence mRNA NA20815 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188158/ERR188158_2.fastq.gz 97767571257458ad74b0408095845bd4 Geuvadis sequence mRNA NA18502 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188164/ERR188164_1.fastq.gz 754f40684b97a5ecc4060e834961ab67 Geuvadis sequence mRNA HG00159 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188328/ERR188328_2.fastq.gz b24b6634679b7e3aaf711806152d3993 Geuvadis sequence mRNA HG00109 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188151/ERR188151_1.fastq.gz b15626c5e5504560c6c311b4f049a154 Geuvadis sequence mRNA NA18489 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188474/ERR188474_1.fastq.gz 5848652997ffa5f30a635df50a38d610 Geuvadis sequence mRNA NA07051 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188305/ERR188305_1.fastq.gz 9830377a8cc986a0d2dafa21c54e6549 Geuvadis sequence mRNA NA20773 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188250/ERR188250_2.fastq.gz d2d91568ae654dfbac34afa6ebd0ded6 Geuvadis sequence mRNA HG00272 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188453/ERR188453_1.fastq.gz dfd1be1b31d22bb002ac5e980762657f Geuvadis sequence mRNA NA20529 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188474/ERR188474_2.fastq.gz 43803cd1e086d9c26c811326b562bd81 Geuvadis sequence mRNA NA07051 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188133/ERR188133_2.fastq.gz 99ab0adcb5587732466d4c221a746b5e Geuvadis sequence mRNA HG00135 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188475/ERR188475_2.fastq.gz 008b10a86c8f652e6b4ef687ebb483ca Geuvadis sequence mRNA NA20815 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188243/ERR188243_1.fastq.gz 1ad70dd8391024e97174846078053f39 Geuvadis sequence mRNA NA19098 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188210/ERR188210_1.fastq.gz ea8d080d89eeb0831fdae0c83a7835b2 Geuvadis sequence mRNA NA20816 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188354/ERR188354_2.fastq.gz 5c48d5e2d24c2149a06cc7531eb78f3c Geuvadis sequence mRNA NA12775 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188129/ERR188129_2.fastq.gz abaea01183977da62682cb38d26509a5 Geuvadis sequence mRNA NA19197 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188371/ERR188371_1.fastq.gz 3a5fcd80573da484c4c9da50f16c9342 Geuvadis sequence mRNA NA11920 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188328/ERR188328_1.fastq.gz 417a7f694e2e2b52ee5a44d714182b79 Geuvadis sequence mRNA HG00109 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188419/ERR188419_1.fastq.gz 3fd3d00e22b7ad2337e82ad29fdb6d69 Geuvadis sequence mRNA NA20800 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188454/ERR188454_2.fastq.gz dcdfe7754a3d4e9df5492bb33f54e2e2 Geuvadis sequence mRNA NA19207 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188454/ERR188454_1.fastq.gz e4110881c6c22b5c958792a1a5528481 Geuvadis sequence mRNA NA19207 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188133/ERR188133_1.fastq.gz b1c655ca78dbcae57c17976ac9d1d29f Geuvadis sequence mRNA HG00135 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188378/ERR188378_2.fastq.gz f1927e202741474721c1222116379fad Geuvadis sequence mRNA HG00259 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188323/ERR188323_2.fastq.gz d529e4d637abc1bb239174f6fdc43c42 Geuvadis sequence mRNA HG00257 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188453/ERR188453_2.fastq.gz b8e714e6b1b164f762a2ee31b4fc3065 Geuvadis sequence mRNA NA20529 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188043/ERR188043_2.fastq.gz 4ccd953d0e2ae6e62b40c42614acb1ed Geuvadis sequence mRNA HG00384 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188129/ERR188129_1.fastq.gz b0cd625f181d0e4dd247f86f02a204a1 Geuvadis sequence mRNA NA19197 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188210/ERR188210_2.fastq.gz c974b2e1e05d9e1ca420e3e84a4989e5 Geuvadis sequence mRNA NA20816 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188452/ERR188452_2.fastq.gz ea3728949058cd2123bb434fde4a579e Geuvadis sequence mRNA NA20515 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188251/ERR188251_1.fastq.gz a4d1ba2aeed6c9e1d6ef0d9b23a587a8 Geuvadis sequence mRNA NA20756 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188251/ERR188251_2.fastq.gz b6b14642a90ada74c9c9a542e5df20fd Geuvadis sequence mRNA NA20756 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188250/ERR188250_1.fastq.gz 07430d9a0f45b448cc2ed32cb4cae604 Geuvadis sequence mRNA HG00272 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188127/ERR188127_2.fastq.gz 6ddc595f68b508106d6a4af381fa3d3a Geuvadis sequence mRNA HG00334 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188101/ERR188101_2.fastq.gz 3a494bb72cd1852d6d57ab6fd54532bc Geuvadis sequence mRNA NA10847 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188121/ERR188121_2.fastq.gz 39c126eb8358d394a8d5c992ead021cd Geuvadis sequence mRNA HG00311 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188121/ERR188121_1.fastq.gz d69ae3f73cba95a09b325ebe196bf20a Geuvadis sequence mRNA HG00311 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188043/ERR188043_1.fastq.gz 01efc176764853aed69851e29adf31d2 Geuvadis sequence mRNA HG00384 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188396/ERR188396_1.fastq.gz 5d6e38b60de1d61571b62fdd0f333dbb Geuvadis sequence mRNA NA12383 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188123/ERR188123_1.fastq.gz ba57fe34304c6b74276c7b1df55fe053 Geuvadis sequence mRNA HG00313 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188419/ERR188419_2.fastq.gz ebc556693595649ada418540fc09a208 Geuvadis sequence mRNA NA20800 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188297/ERR188297_1.fastq.gz 791b1e63ad045e05506d43634ed3e728 Geuvadis sequence mRNA NA20503 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188378/ERR188378_1.fastq.gz 1adfa5820131f0c6288ecc2f48d2fe33 Geuvadis sequence mRNA HG00259 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188323/ERR188323_1.fastq.gz 426556e669f519b2d7b2fe96469b2ef1 Geuvadis sequence mRNA HG00257 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188089/ERR188089_2.fastq.gz eceeb27b9a7df9f38eef07b94e2ed59b Geuvadis sequence mRNA HG00358 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188134/ERR188134_2.fastq.gz 240662ddebfeb49fe012951a7353c097 Geuvadis sequence mRNA NA12827 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188134/ERR188134_1.fastq.gz 60790937bd703be43c2451297a39ec92 Geuvadis sequence mRNA NA12827 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188297/ERR188297_2.fastq.gz 7a1cb6641e991f2eb242088b814dc1cf Geuvadis sequence mRNA NA20503 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188186/ERR188186_2.fastq.gz ddfb00137d45da6b098035ad838a843c Geuvadis sequence mRNA HG00115 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188364/ERR188364_2.fastq.gz e75beb38933b6f2fed3f229f0e4d2dc1 Geuvadis sequence mRNA NA19248 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188452/ERR188452_1.fastq.gz e28e415b5066d674ee83938a3bac0854 Geuvadis sequence mRNA NA20515 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188161/ERR188161_1.fastq.gz 34d52b21dcb6013a6b5a81f8fac9d6e0 Geuvadis sequence mRNA NA11918 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188127/ERR188127_1.fastq.gz e1b15c846255c7f5d50612689af7e912 Geuvadis sequence mRNA HG00334 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188123/ERR188123_2.fastq.gz 13213cccad28f4d49eed7c6f6349716a Geuvadis sequence mRNA HG00313 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188047/ERR188047_2.fastq.gz 300a284ea239de84003a42788e38e5a2 Geuvadis sequence mRNA NA06994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188101/ERR188101_1.fastq.gz a78821bb0696b24c7dd21d6429e591ee Geuvadis sequence mRNA NA10847 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188302/ERR188302_1.fastq.gz dfb400075405fb40ac4b1e1eb4378303 Geuvadis sequence mRNA HG00183 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188396/ERR188396_2.fastq.gz e04f39722e3395768ef555e331f926ca Geuvadis sequence mRNA NA12383 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188406/ERR188406_2.fastq.gz 8659f6532b7ace33299de723d993da43 Geuvadis sequence mRNA NA20828 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188171/ERR188171_1.fastq.gz a599236480c39dbd52ae1ba20f18e063 Geuvadis sequence mRNA NA20783 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188302/ERR188302_2.fastq.gz 25dc59f99292cea04cdeed898559fb44 Geuvadis sequence mRNA HG00183 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188256/ERR188256_2.fastq.gz 51bb1d211e22d04a5d58a218fa3fe305 Geuvadis sequence mRNA NA12777 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188161/ERR188161_2.fastq.gz 1ecaa86cfd01101426534d1384dd0602 Geuvadis sequence mRNA NA11918 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188364/ERR188364_1.fastq.gz be4740dbd98ec566902a4694d21da5b2 Geuvadis sequence mRNA NA19248 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188445/ERR188445_2.fastq.gz 41408fa64af77f2a3a58e0f6cdcbe7fd Geuvadis sequence mRNA HG00173 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188089/ERR188089_1.fastq.gz f1758072d07db324a65bc1fc51af4dde Geuvadis sequence mRNA HG00358 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188352/ERR188352_1.fastq.gz 31ff23840d9e66e07a09b1ba67a57ff4 Geuvadis sequence mRNA NA18909 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188186/ERR188186_1.fastq.gz e32960f57970f2e9e8f1c15bca89aef1 Geuvadis sequence mRNA HG00115 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188321/ERR188321_1.fastq.gz 8766a3956decad1e26b296525e957c70 Geuvadis sequence mRNA HG00339 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188160/ERR188160_2.fastq.gz e7c3e93d32734df0496bf168af7edea4 Geuvadis sequence mRNA NA20513 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188420/ERR188420_2.fastq.gz c1474b359dbe628b5ed94085d7e60ee4 Geuvadis sequence mRNA NA12763 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188420/ERR188420_1.fastq.gz 638e240107a86761a5eb81b018b3cf84 Geuvadis sequence mRNA NA12763 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188256/ERR188256_1.fastq.gz 3ac69f1150affcf57c27818a82ac7a4f Geuvadis sequence mRNA NA12777 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188171/ERR188171_2.fastq.gz a79e4b89a7052176e79132fb8c8196da Geuvadis sequence mRNA NA20783 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188193/ERR188193_2.fastq.gz fb921722c3663076cf6046ddb375cc2e Geuvadis sequence mRNA NA19141 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188047/ERR188047_1.fastq.gz 1ee5141a6e25b157945146873c9dbf7e Geuvadis sequence mRNA NA06994 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188233/ERR188233_2.fastq.gz 04ab904d9b2cbe86e66f40e1d00a0d09 Geuvadis sequence mRNA NA11993 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188352/ERR188352_2.fastq.gz 692c07244cd52ddab84cdea899257bb2 Geuvadis sequence mRNA NA18909 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188441/ERR188441_1.fastq.gz f6dc37c702ed4c0c512663abafc3af2c Geuvadis sequence mRNA NA12348 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188326/ERR188326_1.fastq.gz e490ad5158f6666c52dee4023f3d102d Geuvadis sequence mRNA HG00275 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188233/ERR188233_1.fastq.gz 82c69891dd5d036f758d094285adc2d8 Geuvadis sequence mRNA NA11993 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188030/ERR188030_1.fastq.gz a11e508b94baa4f820f6f19ebfbbeb2c Geuvadis sequence mRNA NA19119 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188406/ERR188406_1.fastq.gz bd736315b4ecf1b441202a54910b7cf5 Geuvadis sequence mRNA NA20828 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188160/ERR188160_1.fastq.gz 366aca4595fbb1454684bb9df465a570 Geuvadis sequence mRNA NA20513 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188106/ERR188106_1.fastq.gz b40b349886120f8b03cfd65bdc9d3ad1 Geuvadis sequence mRNA HG00247 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188445/ERR188445_1.fastq.gz 39c78403ca88e5c315f72465d4112644 Geuvadis sequence mRNA HG00173 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188271/ERR188271_2.fastq.gz 57d08296ec96325790465cfc7e3285e6 Geuvadis sequence mRNA HG00246 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188321/ERR188321_2.fastq.gz 384e11036089621ac92f64e345bb4a9d Geuvadis sequence mRNA HG00339 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188193/ERR188193_1.fastq.gz e0a7c88b4b106bd92f4e30a4a390f8d3 Geuvadis sequence mRNA NA19141 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188457/ERR188457_2.fastq.gz e99ea41302b4bf568d7dea2a75d0b2f7 Geuvadis sequence mRNA HG00280 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188080/ERR188080_2.fastq.gz 93a190f28d6c1757c74533553e38c11a Geuvadis sequence mRNA HG00250 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188080/ERR188080_1.fastq.gz 11d746fb1d6960d0c83d95b824aa5352 Geuvadis sequence mRNA HG00250 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188030/ERR188030_2.fastq.gz d41f66c3faf9af02149b4aaf4d990532 Geuvadis sequence mRNA NA19119 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188046/ERR188046_2.fastq.gz 45da18b710fc5a1da21959b4a1187b23 Geuvadis sequence mRNA HG00320 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188239/ERR188239_1.fastq.gz 87c536eddfacee5d62ac59ba9eb4aa82 Geuvadis sequence mRNA NA20520 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188326/ERR188326_2.fastq.gz 1e5cbdc956bb471cf0ecf19bb5f45a65 Geuvadis sequence mRNA HG00275 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188265/ERR188265_1.fastq.gz 39e4babfd721ad39518f94243a6757f1 Geuvadis sequence mRNA NA20814 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188271/ERR188271_1.fastq.gz 6205273c4b3c58114f997ef306bec2bc Geuvadis sequence mRNA HG00246 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188106/ERR188106_2.fastq.gz 78913e97109bcdc942502be62f70e7cd Geuvadis sequence mRNA HG00247 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188206/ERR188206_2.fastq.gz e3ab11774bae813587117960b5979b61 Geuvadis sequence mRNA HG00100 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188351/ERR188351_1.fastq.gz 71f2bd87d1e5d884a03f6877d30b0651 Geuvadis sequence mRNA HG00253 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188351/ERR188351_2.fastq.gz 3161f919ed489543435f89f3b1584c17 Geuvadis sequence mRNA HG00253 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188441/ERR188441_2.fastq.gz 28c898eeb35cb7089095a374ae5020e6 Geuvadis sequence mRNA NA12348 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188228/ERR188228_1.fastq.gz e8e9c0c4812bfe6b238bcc45f5456df6 Geuvadis sequence mRNA NA12829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188400/ERR188400_1.fastq.gz e3605506e14d5719e50a73405a9fd624 Geuvadis sequence mRNA HG00188 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188422/ERR188422_2.fastq.gz 0524f33294ae9ad0a2b25a4f080503ef Geuvadis sequence mRNA NA19172 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188422/ERR188422_1.fastq.gz 443c9ebba126cbb68817c7c7e9b8b5c8 Geuvadis sequence mRNA NA19172 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188265/ERR188265_2.fastq.gz 0a5b7a2e6dbfea861fe002d889c03d67 Geuvadis sequence mRNA NA20814 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188136/ERR188136_2.fastq.gz 18127d1091a947ce6928d9348803bf15 Geuvadis sequence mRNA HG00103 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188194/ERR188194_1.fastq.gz 72ae94153999b5aa6c26107c0e314794 Geuvadis sequence mRNA HG00284 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188457/ERR188457_1.fastq.gz 9f78735c092b25e3bcbf27c01b0973e7 Geuvadis sequence mRNA HG00280 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188176/ERR188176_1.fastq.gz 0beed0123b6007eafe168b786ff09ef9 Geuvadis sequence mRNA NA07357 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188046/ERR188046_1.fastq.gz 9cf6b09cf8725dfd58a23d8323325a00 Geuvadis sequence mRNA HG00320 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188239/ERR188239_2.fastq.gz 278846ae9df1cd18f7c1994789682b59 Geuvadis sequence mRNA NA20520 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188381/ERR188381_2.fastq.gz 0f6995de4b2ba58a555fdf46e81872a0 Geuvadis sequence mRNA NA20769 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188130/ERR188130_1.fastq.gz 116897f5c144d386d272fbff1a98b82b Geuvadis sequence mRNA HG00261 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188130/ERR188130_2.fastq.gz ac50abeb6787ce8832b84d1a59a7e40b Geuvadis sequence mRNA HG00261 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188176/ERR188176_2.fastq.gz 5311161a57c9e3d6e28975948620d44c Geuvadis sequence mRNA NA07357 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188175/ERR188175_1.fastq.gz 5b7a4fc9c861dfb3025acbc5932bfcec Geuvadis sequence mRNA HG00359 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188325/ERR188325_2.fastq.gz cbffa77f930a6f6e862e8248784e20ef Geuvadis sequence mRNA NA06984 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188206/ERR188206_1.fastq.gz 926c273b1d5a3b065dd0f366eadf77ad Geuvadis sequence mRNA HG00100 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188482/ERR188482_2.fastq.gz 47f8cc328d8926d22cadbb5e442e1fe0 Geuvadis sequence mRNA HG00308 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188228/ERR188228_2.fastq.gz cd1cc7b4521888218ace9dbc7222bc94 Geuvadis sequence mRNA NA12829 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188194/ERR188194_2.fastq.gz f8073cb4f0cdefb65647309238b30440 Geuvadis sequence mRNA HG00284 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188390/ERR188390_2.fastq.gz 76c8368ea63f5f209bb8482c201fe3c8 Geuvadis sequence mRNA NA19235 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188400/ERR188400_2.fastq.gz bbaf0bc07eb87c287b5af647f533db5e Geuvadis sequence mRNA HG00188 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188185/ERR188185_2.fastq.gz 8ab37d4a023031e7de333ecac624a165 Geuvadis sequence mRNA HG00260 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188136/ERR188136_1.fastq.gz 09c38fe427efbb87b4ea9f5f64d5d075 Geuvadis sequence mRNA HG00103 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188154/ERR188154_1.fastq.gz a90ea6905b07cfe3cb1103a625dd6703 Geuvadis sequence mRNA HG00251 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188025/ERR188025_2.fastq.gz 2422ede287dc956a802edaceaf4cdf07 Geuvadis sequence mRNA HG00377 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188185/ERR188185_1.fastq.gz 608c1e64a3759c7e8a616d754101432e Geuvadis sequence mRNA HG00260 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188254/ERR188254_2.fastq.gz 2ad1cbae8341aeef75e7b10bc71e50b9 Geuvadis sequence mRNA NA20506 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188482/ERR188482_1.fastq.gz 815a410c450e9736b4dba9e262427991 Geuvadis sequence mRNA HG00308 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188325/ERR188325_1.fastq.gz 09fc197951e0b99aff4ae056245ac60f Geuvadis sequence mRNA NA06984 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188341/ERR188341_1.fastq.gz 46e916fdaf6d88ca5897861bafa05bd0 Geuvadis sequence mRNA HG00328 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188381/ERR188381_1.fastq.gz 1f8eeb12f69914b488f2fbb9efd9ebf4 Geuvadis sequence mRNA NA20769 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188329/ERR188329_2.fastq.gz 206b5f19e00831b8543810c5ea93b304 Geuvadis sequence mRNA NA20505 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188175/ERR188175_2.fastq.gz 23adec816bb0d66660d5f9c71ddf7285 Geuvadis sequence mRNA HG00359 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188390/ERR188390_1.fastq.gz a9b60d03952097974d904302ad3e254a Geuvadis sequence mRNA NA19235 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188055/ERR188055_1.fastq.gz 8ddf5a3b5f07b5f923401bd8f2f38096 Geuvadis sequence mRNA NA19171 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188142/ERR188142_2.fastq.gz 2d7c53c7ba448969ab687f1d1306187b Geuvadis sequence mRNA NA12287 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188142/ERR188142_1.fastq.gz 3c6d4176b01d84f7ed6c6570091c0c08 Geuvadis sequence mRNA NA12287 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188254/ERR188254_1.fastq.gz b8af2db453155a639e4afc6cd044ad74 Geuvadis sequence mRNA NA20506 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188167/ERR188167_2.fastq.gz 115f53e956e362d8f3f8ef68300369a2 Geuvadis sequence mRNA HG00106 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188187/ERR188187_1.fastq.gz c8b10063abe4ab7b3b43a1ccd46c9548 Geuvadis sequence mRNA HG00176 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188025/ERR188025_1.fastq.gz 5dc2ac637998662013144f65fbd88c7c Geuvadis sequence mRNA HG00377 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188085/ERR188085_1.fastq.gz 07a322adfb02e8bc1374626b29283b94 Geuvadis sequence mRNA NA18520 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188329/ERR188329_1.fastq.gz 551e9a08b8a6fc22ade1e215259f04d9 Geuvadis sequence mRNA NA20505 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188341/ERR188341_2.fastq.gz 75b99d1bc394cf06dfa8a37a6ac1c608 Geuvadis sequence mRNA HG00328 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188219/ERR188219_1.fastq.gz f38933b29656f0df59a5ed139f0b8432 Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188255/ERR188255_2.fastq.gz 82dcb37bceec269ce59f8e99abfec061 Geuvadis sequence mRNA HG00323 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188255/ERR188255_1.fastq.gz 4089d9a66ba69198763c63702d735f29 Geuvadis sequence mRNA HG00323 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188154/ERR188154_2.fastq.gz b5fec5721035fc01adf864f8777a3e79 Geuvadis sequence mRNA HG00251 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188430/ERR188430_1.fastq.gz b0505003cd6ae83c02025a20535ae1ce Geuvadis sequence mRNA HG00132 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188083/ERR188083_2.fastq.gz 3d2c9eb11e96d2697fbddbb30cee0f82 Geuvadis sequence mRNA HG00285 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188332/ERR188332_1.fastq.gz c5c0ccdf6ba5e8a238a80f453404841f Geuvadis sequence mRNA HG00158 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188332/ERR188332_2.fastq.gz 3727e2c0a2234348bd4615cacbea8198 Geuvadis sequence mRNA HG00158 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188085/ERR188085_2.fastq.gz 38d6558884629bb6ce20e7594f7c5d87 Geuvadis sequence mRNA NA18520 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188246/ERR188246_2.fastq.gz 6e36dd80e7e5065f73548868867c56e5 Geuvadis sequence mRNA NA11840 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188143/ERR188143_1.fastq.gz a0c15e09cd0a1f2e47d951a5de36732c Geuvadis sequence mRNA NA18487 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188055/ERR188055_2.fastq.gz effdbf165d4df37093d2eb88c633898b Geuvadis sequence mRNA NA19171 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188291/ERR188291_1.fastq.gz c5412b09d25282de59ad3e0ca9512900 Geuvadis sequence mRNA NA12813 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188167/ERR188167_1.fastq.gz c3b6d8ac6a190efa961be3bfd33a7ab2 Geuvadis sequence mRNA HG00106 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188187/ERR188187_2.fastq.gz d59944b235dd7b4fe97a927a3317e29e Geuvadis sequence mRNA HG00176 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188347/ERR188347_1.fastq.gz ad3ed9dc55b6660ca82b2f835c9ac8f1 Geuvadis sequence mRNA NA20525 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188310/ERR188310_1.fastq.gz ea1ae1d1721b8b8866ef4b3fe175162d Geuvadis sequence mRNA HG00124 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188310/ERR188310_2.fastq.gz 49e70da6ea00a24f2f7d347421553fd2 Geuvadis sequence mRNA HG00124 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188291/ERR188291_2.fastq.gz ba5b9e00305b46f3eddc8f5cad028576 Geuvadis sequence mRNA NA12813 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188083/ERR188083_1.fastq.gz 6682f3fa674a2ad30ac5b357436b91aa Geuvadis sequence mRNA HG00285 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188261/ERR188261_1.fastq.gz bd2be1470ae39a62e4dda6de976af5b2 Geuvadis sequence mRNA NA19108 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188219/ERR188219_2.fastq.gz 29bf1d4234bdb5603d3b272daf571e5c Geuvadis sequence mRNA HG00117 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188051/ERR188051_2.fastq.gz 5c642900e59a8b03910c4635fbbe9b9e Geuvadis sequence mRNA NA12830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188430/ERR188430_2.fastq.gz 69077dc0f79f9726003f439af2bc9c7c Geuvadis sequence mRNA HG00132 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188156/ERR188156_2.fastq.gz aa49f52e8ab930d8361d326724248d17 Geuvadis sequence mRNA HG00335 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188258/ERR188258_2.fastq.gz 4fa90a45d0e16705036da228a0845e44 Geuvadis sequence mRNA NA20530 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188166/ERR188166_2.fastq.gz 8b4c4d0a76e8a7fa9399054aa5234b95 Geuvadis sequence mRNA HG00108 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188166/ERR188166_1.fastq.gz b1d4414451cc25c896904daadcd1b02f Geuvadis sequence mRNA HG00108 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188246/ERR188246_1.fastq.gz 49a9f55e9dfa57e1518cb7deb03a5b61 Geuvadis sequence mRNA NA11840 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188050/ERR188050_2.fastq.gz 498784fe9d4303842e1d28469c7140cc Geuvadis sequence mRNA NA20518 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188075/ERR188075_2.fastq.gz 3a27d2ff1f10183c8e2aff8758779f23 Geuvadis sequence mRNA HG00349 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188143/ERR188143_2.fastq.gz fc6f3824a49f6cbf5dbf63f3223ff997 Geuvadis sequence mRNA NA18487 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188074/ERR188074_1.fastq.gz 00ae79317a3046623b674f83f7f642fb Geuvadis sequence mRNA NA19257 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188051/ERR188051_1.fastq.gz 55e50a5fb76f94de39138597537d4448 Geuvadis sequence mRNA NA12830 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188347/ERR188347_2.fastq.gz 7b95aefd3528719c68cdf67bf5bbb57c Geuvadis sequence mRNA NA20525 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188330/ERR188330_2.fastq.gz 79081d8da5de65fd6dbc1e664c52dc6e Geuvadis sequence mRNA HG00379 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188401/ERR188401_1.fastq.gz e960ae7c9162cf14d8358595a5724ec8 Geuvadis sequence mRNA HG00141 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188401/ERR188401_2.fastq.gz 62fff9878f9df778cd9d54e976ba0db2 Geuvadis sequence mRNA HG00141 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188074/ERR188074_2.fastq.gz 74ebc420ebab0642249e0abaf597c2fd Geuvadis sequence mRNA NA19257 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188195/ERR188195_2.fastq.gz 56cb8a38a3022f91ee276f01989ec9b9 Geuvadis sequence mRNA NA20792 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188424/ERR188424_2.fastq.gz 8024f5027d37a401e7cd70371599e23c Geuvadis sequence mRNA NA20819 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188261/ERR188261_2.fastq.gz 89e5569b2726e9291b763d3b0c781554 Geuvadis sequence mRNA NA19108 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188183/ERR188183_1.fastq.gz 18318a95696b6ec8a8d8ce92e36260c4 Geuvadis sequence mRNA NA19185 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188156/ERR188156_1.fastq.gz 313ccd70dd1a0cd136bb46bcbfba3db2 Geuvadis sequence mRNA HG00335 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188075/ERR188075_1.fastq.gz 67482c6c7ec614ada15d4dae866e7a00 Geuvadis sequence mRNA HG00349 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188174/ERR188174_2.fastq.gz a928e3d3ecb77420ad1ec6c1c9ac8053 Geuvadis sequence mRNA NA19198 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188258/ERR188258_1.fastq.gz 9a9da95fadf0f022a770638cb7d0248c Geuvadis sequence mRNA NA20530 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188168/ERR188168_2.fastq.gz a37dbb4602262095126099f09e4e5e90 Geuvadis sequence mRNA HG00346 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188050/ERR188050_1.fastq.gz 40ec564562f49aabd2ba01e310cc3bb2 Geuvadis sequence mRNA NA20518 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188300/ERR188300_1.fastq.gz 0c19b60e199efbc69358b2b1a178e2c7 Geuvadis sequence mRNA HG00319 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188290/ERR188290_1.fastq.gz 8a55bf7cd1f7c556229bbc977533b030 Geuvadis sequence mRNA NA20811 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188168/ERR188168_1.fastq.gz 92aee0783e9197f775ba08bfe05d0cb2 Geuvadis sequence mRNA HG00346 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188040/ERR188040_2.fastq.gz 66f02ad30595f809f01cfe686c5d3baf Geuvadis sequence mRNA HG00096 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188183/ERR188183_2.fastq.gz 4f34934eede054e190ee02fb1e7123f6 Geuvadis sequence mRNA NA19185 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188424/ERR188424_1.fastq.gz 02cd9861bb848c7f65d483cca4b1a954 Geuvadis sequence mRNA NA20819 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188149/ERR188149_1.fastq.gz 78372aa26e3d905dfc313be404edfc2b Geuvadis sequence mRNA HG00182 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188330/ERR188330_1.fastq.gz 9a37db2895e82b3971ad72521953253a Geuvadis sequence mRNA HG00379 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188278/ERR188278_1.fastq.gz c6d0bbaa42927ab27f34ae21783d48ea Geuvadis sequence mRNA NA18861 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188195/ERR188195_1.fastq.gz e331389534f12ca811b2f66d324ab88b Geuvadis sequence mRNA NA20792 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188174/ERR188174_1.fastq.gz a313e609dd9898b5934211350425f6c9 Geuvadis sequence mRNA NA19198 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188467/ERR188467_2.fastq.gz 5d9e4a339d6851587b51dd5fed48ba87 Geuvadis sequence mRNA NA12286 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188432/ERR188432_1.fastq.gz 977e44ac283e10274c2d683ee9a3c3f9 Geuvadis sequence mRNA HG00309 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188432/ERR188432_2.fastq.gz ea4a9096333791bda2b3e470ea09c50c Geuvadis sequence mRNA HG00309 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188040/ERR188040_1.fastq.gz 8f79d46829ea84287c06eb15566d3d06 Geuvadis sequence mRNA HG00096 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188339/ERR188339_2.fastq.gz 28c7989f788a271850a5ac173d2d5ad4 Geuvadis sequence mRNA NA12815 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188292/ERR188292_2.fastq.gz 63a2a1b8f84598c58b12843870d3cc9b Geuvadis sequence mRNA NA19189 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188290/ERR188290_2.fastq.gz 09c92f4b666fd647d047702cc6ce7afb Geuvadis sequence mRNA NA20811 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188092/ERR188092_1.fastq.gz 079f1175e8669165ea2bfe076c1ee1d6 Geuvadis sequence mRNA NA12546 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188278/ERR188278_2.fastq.gz e443d2fed9fb460fff87e2d96ee24f6f Geuvadis sequence mRNA NA18861 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188149/ERR188149_2.fastq.gz 7f067856c01afa7889762dac0726049a Geuvadis sequence mRNA HG00182 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188473/ERR188473_1.fastq.gz 6adaaba1179130271b402855f944b377 Geuvadis sequence mRNA HG00344 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188338/ERR188338_2.fastq.gz 639c9fe50ee7b5e5d5e90512445cdfdc Geuvadis sequence mRNA HG00134 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188338/ERR188338_1.fastq.gz 28aab9f14837491b18d319e49203269d Geuvadis sequence mRNA HG00134 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188300/ERR188300_2.fastq.gz 4e87445713086a0c85efb36960a766bc Geuvadis sequence mRNA HG00319 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188177/ERR188177_1.fastq.gz 10b537ab077da8a18735d90dd1676b02 Geuvadis sequence mRNA NA12234 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188097/ERR188097_2.fastq.gz 57020c0858e6875e8ef8c36c584d12f1 Geuvadis sequence mRNA NA18511 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188317/ERR188317_2.fastq.gz c12e81e78eb1c6dd6ceabeb93c531496 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188317/ERR188317_1.fastq.gz 8aecad991d26cf26c9ae6d03eaff15f5 Geuvadis sequence mRNA NA20527 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188092/ERR188092_2.fastq.gz b93360358bb16d6d056b85aecce38739 Geuvadis sequence mRNA NA12546 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188225/ERR188225_1.fastq.gz b76042731260d004652be0579cd8f693 Geuvadis sequence mRNA NA19152 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188314/ERR188314_1.fastq.gz cf768fd4f2a4aeeb5a1e66040b611909 Geuvadis sequence mRNA HG00380 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188467/ERR188467_1.fastq.gz 4eec47f9cb8e446bed32c153e56485d9 Geuvadis sequence mRNA NA12286 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188471/ERR188471_2.fastq.gz 6ccc3efafca7cd595f905b82c297aa34 Geuvadis sequence mRNA NA19130 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188339/ERR188339_1.fastq.gz f930355862263588aed02c4ad75d2ca5 Geuvadis sequence mRNA NA12815 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188292/ERR188292_1.fastq.gz 9137de3e9bc6b3c882f4a99158bf01f4 Geuvadis sequence mRNA NA19189 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188382/ERR188382_1.fastq.gz 199e280d4bace8a0b64c7d20868ff039 Geuvadis sequence mRNA NA20536 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188060/ERR188060_1.fastq.gz 702edd629ec251241eab2ea9fbc7f746 Geuvadis sequence mRNA NA18517 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188060/ERR188060_2.fastq.gz b2f05240323cf965502c2d88f5bf1515 Geuvadis sequence mRNA NA18517 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188471/ERR188471_1.fastq.gz 9e9bd55e2995b7aae0be5613527e4f5c Geuvadis sequence mRNA NA19130 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188383/ERR188383_2.fastq.gz 27b1c07cb815c67b607e9cbd70767bba Geuvadis sequence mRNA HG00136 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188450/ERR188450_2.fastq.gz 473ba1d17f1f1dbabb4f112c9bc55f19 Geuvadis sequence mRNA HG00235 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188473/ERR188473_2.fastq.gz 6824c160bd0b049af8929b8eaaee540e Geuvadis sequence mRNA HG00344 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188232/ERR188232_2.fastq.gz da3d88a26203786e5bd9641ec543dad5 Geuvadis sequence mRNA NA19160 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188177/ERR188177_2.fastq.gz 38b5f9350ec3fded2a440b9aff73a294 Geuvadis sequence mRNA NA12234 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188314/ERR188314_2.fastq.gz 3fe1c4ada94698054b8f4a03894ad85f Geuvadis sequence mRNA HG00380 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188099/ERR188099_2.fastq.gz 7e0f4acca70ec758ba4901cc0d03e5bd Geuvadis sequence mRNA NA12843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188097/ERR188097_1.fastq.gz c38d20682763b0a44d926350deb6386a Geuvadis sequence mRNA NA18511 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188235/ERR188235_1.fastq.gz 5c20636b19c4256ad67f3a313efd476f Geuvadis sequence mRNA NA11930 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188225/ERR188225_2.fastq.gz f4e4d0e02f1c6de1c28b41c995790fa5 Geuvadis sequence mRNA NA19152 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188038/ERR188038_1.fastq.gz 9d9cd1167afc8f525b4e5e183419c5db Geuvadis sequence mRNA HG00345 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188413/ERR188413_1.fastq.gz 381503472d529a371ce37d7f3fe5ffb7 Geuvadis sequence mRNA NA12890 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188235/ERR188235_2.fastq.gz 016e084716245a4b707650eeee77e75d Geuvadis sequence mRNA NA11930 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188331/ERR188331_1.fastq.gz e16891fb5fd255c197b5fed7c616080e Geuvadis sequence mRNA NA12155 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188232/ERR188232_1.fastq.gz 6de018cd09164e0ec12797b1bfcfea8a Geuvadis sequence mRNA NA19160 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188450/ERR188450_1.fastq.gz e047ec85a85976656b5cb19aad3af6a7 Geuvadis sequence mRNA HG00235 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188421/ERR188421_1.fastq.gz 21223c78818025dbccb3fe27bd045312 Geuvadis sequence mRNA NA19225 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188382/ERR188382_2.fastq.gz 3d50496cabe4f5fe81dffb20b0325ccd Geuvadis sequence mRNA NA20536 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188067/ERR188067_2.fastq.gz 5bbaf2fad06369773469d9bea469d072 Geuvadis sequence mRNA NA11831 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188383/ERR188383_1.fastq.gz e275b7314f20f809ae8c456630fa0664 Geuvadis sequence mRNA HG00136 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188099/ERR188099_1.fastq.gz 67c4e7e628214fdfd687bacbdae53bcc Geuvadis sequence mRNA NA12843 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188370/ERR188370_1.fastq.gz c3e824abb32b50a8f861cbad19649231 Geuvadis sequence mRNA HG00240 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188028/ERR188028_1.fastq.gz 7249d82aac60ab6e3b923cd5cefc12a6 Geuvadis sequence mRNA HG00155 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188028/ERR188028_2.fastq.gz 6d2062e05321e3935b3deb9982a98495 Geuvadis sequence mRNA HG00155 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188331/ERR188331_2.fastq.gz 5e884f307be8f33da205599208385a3d Geuvadis sequence mRNA NA12155 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188418/ERR188418_1.fastq.gz c711e48e89ca5129abd29bb586aefb96 Geuvadis sequence mRNA HG00326 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188402/ERR188402_1.fastq.gz 4a3cd657462bf5735cf7ba3145d4a3c3 Geuvadis sequence mRNA NA20581 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188413/ERR188413_2.fastq.gz df84fb9a4f9b9d4658432fd5bad0b975 Geuvadis sequence mRNA NA12890 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188155/ERR188155_2.fastq.gz 657e0e063bceb757dcc1fe07bf7a6954 Geuvadis sequence mRNA NA20790 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188067/ERR188067_1.fastq.gz ed2ace39003aac881a1965257e2e5fbf Geuvadis sequence mRNA NA11831 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188249/ERR188249_2.fastq.gz 67f248bb0aed587bc04b3d80e28efd46 Geuvadis sequence mRNA NA20802 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188079/ERR188079_2.fastq.gz 3a9fb329da7af4d1e3e760b245831101 Geuvadis sequence mRNA NA20778 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188393/ERR188393_1.fastq.gz 8ca0334d7542ba8bf5f58125fb659e83 Geuvadis sequence mRNA NA20772 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188393/ERR188393_2.fastq.gz 933841ba447404bd713165569866b289 Geuvadis sequence mRNA NA20772 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188038/ERR188038_2.fastq.gz 63dcc6f0f42421ed82dcf92aeaa86886 Geuvadis sequence mRNA HG00345 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188370/ERR188370_2.fastq.gz 4aa875a147d418e96059e8af77cfebed Geuvadis sequence mRNA HG00240 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188094/ERR188094_1.fastq.gz 619dbd8c8f1f60640aa3b828c95acbbc Geuvadis sequence mRNA NA20806 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188421/ERR188421_2.fastq.gz cefa3a31cde586f83a51814d1aff970c Geuvadis sequence mRNA NA19225 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188259/ERR188259_2.fastq.gz dfa6959f057056bec5b20f4c700e5099 Geuvadis sequence mRNA NA20582 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188155/ERR188155_1.fastq.gz 87d91401ec023beeaefbdac3a61f5d2b Geuvadis sequence mRNA NA20790 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188402/ERR188402_2.fastq.gz b32462c6daabc0cef14d14651050b563 Geuvadis sequence mRNA NA20581 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188431/ERR188431_2.fastq.gz b85a14206859a2fa1a460b4045b4b530 Geuvadis sequence mRNA NA12273 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188333/ERR188333_2.fastq.gz 0af27d0405809b7c03ce132c363d48f9 Geuvadis sequence mRNA HG00238 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188333/ERR188333_1.fastq.gz 7946a16208f24ac99f9e1abf72fb6352 Geuvadis sequence mRNA HG00238 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188418/ERR188418_2.fastq.gz d111d43b81ac5154c698bd787ad2102c Geuvadis sequence mRNA HG00326 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188264/ERR188264_2.fastq.gz eb460c22acc6457a2f767836e1fc0bed Geuvadis sequence mRNA HG00274 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188021/ERR188021_2.fastq.gz 66686838668c17b86e55d6eb35c5e4e6 Geuvadis sequence mRNA NA20508 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188079/ERR188079_1.fastq.gz 99cb965ebfc255556d3fd9da42b06c0e Geuvadis sequence mRNA NA20778 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188052/ERR188052_1.fastq.gz f5cdfdf2ed2006905495b7df4718aec9 Geuvadis sequence mRNA NA20541 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188259/ERR188259_1.fastq.gz 1cac9068ff041a14e482de868b1ab134 Geuvadis sequence mRNA NA20582 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188094/ERR188094_2.fastq.gz 435f5328816f00bb5573f441f9453305 Geuvadis sequence mRNA NA20806 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188289/ERR188289_1.fastq.gz 89b22b24d8f6ee64c5f564081dc82360 Geuvadis sequence mRNA HG00232 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188093/ERR188093_2.fastq.gz 8db88980797253628c6f47579af66bbb Geuvadis sequence mRNA NA19150 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188093/ERR188093_1.fastq.gz 77609e21d4d007e4352d98cfc26b5366 Geuvadis sequence mRNA NA19150 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188249/ERR188249_1.fastq.gz bedc4a152f1c9624bbf68551636f874e Geuvadis sequence mRNA NA20802 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188376/ERR188376_1.fastq.gz 9ba79675791bd77749e4714bd088fd27 Geuvadis sequence mRNA NA07037 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188397/ERR188397_1.fastq.gz e926084cfeb500cfd970b95a21e0b52b Geuvadis sequence mRNA HG00271 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188033/ERR188033_1.fastq.gz d6f4e6ecd36a829cee56e4143451975d Geuvadis sequence mRNA HG00336 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188033/ERR188033_2.fastq.gz 5ecd21c592be750f63612373f348b6b8 Geuvadis sequence mRNA HG00336 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188052/ERR188052_2.fastq.gz a2f98c8cea47b55abb35132fb4a5c2a2 Geuvadis sequence mRNA NA20541 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188248/ERR188248_1.fastq.gz c5dfa65acc96250748294b4331685109 Geuvadis sequence mRNA HG00178 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188468/ERR188468_2.fastq.gz f27d55d63d1c38d4b30f7433b60967c1 Geuvadis sequence mRNA HG00154 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188431/ERR188431_1.fastq.gz 422d3e347df6941a58389eba62d94866 Geuvadis sequence mRNA NA12273 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188479/ERR188479_1.fastq.gz 08dd6b0bf63013687eda617bd3e85f2e Geuvadis sequence mRNA NA20761 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188264/ERR188264_1.fastq.gz ded590c9e9ff01b3fc2b6b48dead676e Geuvadis sequence mRNA HG00274 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188021/ERR188021_1.fastq.gz fd54ea6d9086b21ecfc433092a674430 Geuvadis sequence mRNA NA20508 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188447/ERR188447_2.fastq.gz 3d75031dace078b22fca6d50e478eade Geuvadis sequence mRNA NA18934 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188288/ERR188288_1.fastq.gz 24b91c902a6c1ce5f8c79a77fc26f0f8 Geuvadis sequence mRNA NA20507 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188288/ERR188288_2.fastq.gz b289622e06ca0e9c05fd07693052deff Geuvadis sequence mRNA NA20507 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188479/ERR188479_2.fastq.gz 2de3c6086c74403e69e694f0495e6072 Geuvadis sequence mRNA NA20761 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188359/ERR188359_1.fastq.gz a37dfb2907e9c7bcb84ff7bc4c8c2a25 Geuvadis sequence mRNA NA20537 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188218/ERR188218_2.fastq.gz f26751b5f75795e3dbe571c1ac541f15 Geuvadis sequence mRNA HG00325 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188289/ERR188289_2.fastq.gz fbfca801f4c49549b63d9bb77e90bc51 Geuvadis sequence mRNA HG00232 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188115/ERR188115_2.fastq.gz 6b73d3882ba0eef31f124f225ff67145 Geuvadis sequence mRNA HG00382 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188376/ERR188376_2.fastq.gz 42243cf46b51b8483599ed1d3c6e4d89 Geuvadis sequence mRNA NA07037 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188468/ERR188468_1.fastq.gz c9c1b357477827e5ef52d568f6b23fca Geuvadis sequence mRNA HG00154 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188318/ERR188318_1.fastq.gz ea3b3a54ba82e6a3d0cb6b21c87541ca Geuvadis sequence mRNA HG00276 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188397/ERR188397_2.fastq.gz ff00f0ccbc1f0f110210cf91e597d6f9 Geuvadis sequence mRNA HG00271 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188436/ERR188436_1.fastq.gz 11391d56373a2ee148734cfa9bd81151 Geuvadis sequence mRNA NA20540 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188248/ERR188248_2.fastq.gz 03623098cdd22d77a3144f9d6f1c23c8 Geuvadis sequence mRNA HG00178 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188449/ERR188449_1.fastq.gz eb9687c47ceed3a43d87a5cf24331fc4 Geuvadis sequence mRNA NA18499 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188363/ERR188363_2.fastq.gz 31450624f85ec2bc247a9647f3276934 Geuvadis sequence mRNA NA19206 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188436/ERR188436_2.fastq.gz 9ae33fd6f8295ce769d046da1e071e53 Geuvadis sequence mRNA NA20540 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188215/ERR188215_1.fastq.gz 5a7a50f465b4870748c6be9a472b243d Geuvadis sequence mRNA HG00361 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188115/ERR188115_1.fastq.gz e3068552c31a1d9fe2653ce51b20199c Geuvadis sequence mRNA HG00382 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188218/ERR188218_1.fastq.gz 030daa762b4b99977b91fa10ccc2a556 Geuvadis sequence mRNA HG00325 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188032/ERR188032_1.fastq.gz d87e91b75a4bb5a7b61582939d2f3aca Geuvadis sequence mRNA NA12275 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188447/ERR188447_1.fastq.gz 2c2fd0acd14a584c1ae018c2950ca6eb Geuvadis sequence mRNA NA18934 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188388/ERR188388_1.fastq.gz bc50f7ced3c2ca81f940cc7fb6aecbb4 Geuvadis sequence mRNA NA12341 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188359/ERR188359_2.fastq.gz 7d3eb5eda025a42a105d1e6e9d3b52e9 Geuvadis sequence mRNA NA20537 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188318/ERR188318_2.fastq.gz 4906293352d1cf4f6b833e5923690536 Geuvadis sequence mRNA HG00276 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188131/ERR188131_1.fastq.gz 0526810222606f1326531fc25782d3db Geuvadis sequence mRNA NA19213 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188286/ERR188286_1.fastq.gz 4ac3233e154ebfcab8899431cd2da023 Geuvadis sequence mRNA NA20805 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188286/ERR188286_2.fastq.gz af3dc5d433ddf73470c8636ae4b5be49 Geuvadis sequence mRNA NA20805 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188215/ERR188215_2.fastq.gz 0103356c59bd9f37977e3ffbbee4ea40 Geuvadis sequence mRNA HG00361 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188472/ERR188472_2.fastq.gz f559ca76967b75ba3b79d14cb55394fd Geuvadis sequence mRNA HG00378 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188237/ERR188237_1.fastq.gz fc29f17c1a12ea1a66690ce71ffa1de1 Geuvadis sequence mRNA HG00234 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188363/ERR188363_1.fastq.gz e19dec987f413e49a674a99790be93cb Geuvadis sequence mRNA NA19206 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188135/ERR188135_1.fastq.gz 84d773729eb354be947b9d29477e0263 Geuvadis sequence mRNA NA07346 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188388/ERR188388_2.fastq.gz a04d54f07a9f1340d2f1254f2195aa9b Geuvadis sequence mRNA NA12341 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188032/ERR188032_2.fastq.gz 453c03d8e06e87a30eab51ce7057043f Geuvadis sequence mRNA NA12275 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188145/ERR188145_2.fastq.gz e2afb1b097ed867c7fbeda5a60b5451d Geuvadis sequence mRNA NA20519 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188062/ERR188062_1.fastq.gz 4c9649674e92f8895f57606f88a7eb83 Geuvadis sequence mRNA NA11992 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188062/ERR188062_2.fastq.gz 8985f57ab39a75f493a3a7a6150be601 Geuvadis sequence mRNA NA11992 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188449/ERR188449_2.fastq.gz 951f4e860ef38ab219a44590f9d660e7 Geuvadis sequence mRNA NA18499 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188349/ERR188349_2.fastq.gz ab7b527fde782fc3fc44eee596b3664c Geuvadis sequence mRNA NA12842 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188346/ERR188346_2.fastq.gz 8ed3d911e93c318be6012ca77f870c6c Geuvadis sequence mRNA HG00312 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188319/ERR188319_1.fastq.gz 0805009cc6c0ed3db08b0c286c10d93b Geuvadis sequence mRNA NA12249 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188319/ERR188319_2.fastq.gz 8b8ff87c7764d8dda4a25dd933fc667e Geuvadis sequence mRNA NA12249 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188135/ERR188135_2.fastq.gz 7324ec6d2781ec9adf28284083110152 Geuvadis sequence mRNA NA07346 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188279/ERR188279_1.fastq.gz d4303859359d50befb71dbaf467430d8 Geuvadis sequence mRNA NA12776 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188102/ERR188102_2.fastq.gz 83275d34a953171c3b000d2110a6cc05 Geuvadis sequence mRNA HG00383 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188131/ERR188131_2.fastq.gz 5d5733f1cb2d977bc673a6ef418a65f8 Geuvadis sequence mRNA NA19213 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188345/ERR188345_1.fastq.gz 733eb5b6a6d9e3d31490f19b4d9557d2 Geuvadis sequence mRNA NA20771 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188472/ERR188472_1.fastq.gz 9a9e1460edf3f3158de3577224d192a8 Geuvadis sequence mRNA HG00378 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188237/ERR188237_2.fastq.gz 30d775e4c0044a727f02525173f9bb82 Geuvadis sequence mRNA HG00234 GBR http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188437/ERR188437_2.fastq.gz a07f9052190f842281cc7491ca7a4c6f Geuvadis sequence mRNA NA20803 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188064/ERR188064_2.fastq.gz c68dcdc7ebe2dd5f31f76d979c2dd519 Geuvadis sequence mRNA NA19144 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188064/ERR188064_1.fastq.gz 89599f8ebcb5274ffd6fd9d16841119b Geuvadis sequence mRNA NA19144 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188345/ERR188345_2.fastq.gz e2c637269a9984a3440a071fba6f81ca Geuvadis sequence mRNA NA20771 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188179/ERR188179_2.fastq.gz db8585fd172c16effed89bf1f9a4d13c Geuvadis sequence mRNA NA20774 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188299/ERR188299_2.fastq.gz 815f59c4b84c5c5e8502963cae069ad7 Geuvadis sequence mRNA HG00376 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188145/ERR188145_1.fastq.gz fac7789303f2731ccc23657f2711c544 Geuvadis sequence mRNA NA20519 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188458/ERR188458_1.fastq.gz 6c6b8ab8ae0e1d32c10bdf6e05fac0a7 Geuvadis sequence mRNA NA20516 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188349/ERR188349_1.fastq.gz 2c16ac334cefe4e4d2cc63f35a069d01 Geuvadis sequence mRNA NA12842 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188102/ERR188102_1.fastq.gz dd3ccaf8b4fe9209898e8bcde8989009 Geuvadis sequence mRNA HG00383 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188275/ERR188275_2.fastq.gz fbf7d325570105902a45732f3f404f7f Geuvadis sequence mRNA NA19201 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188346/ERR188346_1.fastq.gz b72c9df9e8186d61f238555e1099f8fd Geuvadis sequence mRNA HG00312 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188263/ERR188263_1.fastq.gz 0c5bf07f40003701fab60e9ef5e74bad Geuvadis sequence mRNA HG00281 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188279/ERR188279_2.fastq.gz 07c3d451b611eefce0c5e4041c8f499e Geuvadis sequence mRNA NA12776 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188226/ERR188226_2.fastq.gz b202f4ca568f56cfa791c7d7bd33a54d Geuvadis sequence mRNA NA20532 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188031/ERR188031_1.fastq.gz 99742f8950a1d92ed7a8ecdbaa135e4c Geuvadis sequence mRNA HG00350 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188263/ERR188263_2.fastq.gz 456e82a655d5749666de7a46d80e5ae0 Geuvadis sequence mRNA HG00281 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188172/ERR188172_1.fastq.gz ddfc7484a5c1e4ef671ace4eb5ecf8ff Geuvadis sequence mRNA NA12154 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188458/ERR188458_2.fastq.gz 2cfe1a37174d1d2c1f4a31384a9c925b Geuvadis sequence mRNA NA20516 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188437/ERR188437_1.fastq.gz d36b349f40644cc09675d130acb7c1b3 Geuvadis sequence mRNA NA20803 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188244/ERR188244_2.fastq.gz 4a2187dd71c35888e215dc1d93984cc6 Geuvadis sequence mRNA NA12718 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188244/ERR188244_1.fastq.gz 018897a35685ad86cdae1e47fbd9762a Geuvadis sequence mRNA NA12718 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188179/ERR188179_1.fastq.gz 16e5567e75b3567b0221e182ba725c84 Geuvadis sequence mRNA NA20774 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188334/ERR188334_2.fastq.gz fc4c865a9afb36495d5cc1e4eeb5f069 Geuvadis sequence mRNA NA20543 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188299/ERR188299_1.fastq.gz f09bf8646c4ac7948b681c14d06b96c4 Geuvadis sequence mRNA HG00376 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188356/ERR188356_2.fastq.gz 11e32ff87b00cfa2f721da5fdadbccc7 Geuvadis sequence mRNA NA20514 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188172/ERR188172_2.fastq.gz 0e0b653b03629c565561f77c418efa67 Geuvadis sequence mRNA NA12154 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188031/ERR188031_2.fastq.gz e7a0c009c87640d03500f0fac116e867 Geuvadis sequence mRNA HG00350 FIN http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188275/ERR188275_1.fastq.gz e1aa3f4238c1f2734c8ebc67c18baba4 Geuvadis sequence mRNA NA19201 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188104/ERR188104_2.fastq.gz 5ddee1e707a2547a147e194f54130ff2 Geuvadis sequence mRNA NA19146 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188226/ERR188226_1.fastq.gz a6ac45ac8b84d16e1811a3f68275c9af Geuvadis sequence mRNA NA20532 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188104/ERR188104_1.fastq.gz d214f36e9d832333522d30c327cdfe42 Geuvadis sequence mRNA NA19146 YRI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188277/ERR188277_1.fastq.gz 0b322df2565dda1d914000d643d05af1 Geuvadis sequence mRNA NA12340 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188356/ERR188356_1.fastq.gz 35fd243d136956da9ea77afa11051b74 Geuvadis sequence mRNA NA20514 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188334/ERR188334_1.fastq.gz 835915467b6dfac3c27b41a1bc21b91d Geuvadis sequence mRNA NA20543 TSI http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md -ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR188/ERR188277/ERR188277_2.fastq.gz 2ed020e7e5bee8675e4208b4e72f0497 Geuvadis sequence mRNA NA12340 CEU http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/geuvadis/README_geuvadis_datareuse_statement.md diff --git a/GLIMMPS_pipline/data_download_process/mapSTAR.sh b/GLIMMPS_pipline/data_download_process/mapSTAR.sh deleted file mode 100644 index 1fd301d..0000000 --- a/GLIMMPS_pipline/data_download_process/mapSTAR.sh +++ /dev/null @@ -1,28 +0,0 @@ -#!/bin/bash -## -## Align the reads from pairwise fastq files to hg19 genmoe using STAR and -## get the uniquely mapped reads -## Author: Yungang Xu (yungang.xu@hotmail.com) -##----------Arguments---------- -## $1 the individual id, which is used to find the pairwise fastq files for mapping -##----------Usage---------- -## bash mapSTAR.sh - -## set the input, output, and STAR index path -inPrefix='/mnt/isilon/xing_lab/aspera/Yungang/Geuvadis/CEU/input/' ## the path prefix of the input fastq files -outPrefix='/mnt/isilon/xing_lab/xuy5/GLIMMPS/Geuvadis/CEU/' ## the path prefix of the output files -hg19_starIndex_75='/mnt/isilon/xing_lab/xuy5/Genome/hg19/starIndex' ## the parth of the STAR index for hg19 genome - -## do mapping -echo STAR mapping -STAR --runThreadN 50 --genomeDir $hg19_starIndex_75 --readFilesCommand gunzip -c --outFileNamePrefix $outPrefix'STARout/'$1. --readFilesIn $inPrefix$1'_1.fq.gz' $inPrefix$1'_2.fq.gz' --outFilterMultimapNmax 20 --alignEndsType EndToEnd --outFilterMismatchNmax 6 --outFilterType BySJout --outFilterIntronMotifs RemoveNoncanonicalUnannotated --alignIntronMax 300000 --outSJfilterOverhangMin 8 8 8 8 SortedByCoordinate --outFilterMultimapScoreRange 0 -rm -r $outPrefix'STARout/'$1'._STARtmp' -mv $outPrefix'STARout/'$1.Aligned.out.sam $outPrefix'sam/'$1.sam - -## get uniquely mapped reads -echo Get uniquely mapped reads -mkdir -p $outPrefix/sam_unique/$1 -## output the SAM header -samtools view -S -H $outPrefix/sam/$1.sam > $outPrefix/sam_unique/$1.unique.sam -samtools view -S $outPrefix/sam/$1.sam | awk '{for (i=12; i<=NF; ++i) { if ($i ~ "^NH:i:"){ mp = substr($i,6,length($i)-5); if (mp == 1){print $0}} }}' >> $outPrefix/sam_unique/$1/unique.sam -echo $1 Done >> $1.mapSTAR.log diff --git a/GLIMMPS_pipline/data_download_process/repMerge.sh b/GLIMMPS_pipline/data_download_process/repMerge.sh deleted file mode 100644 index 6720c01..0000000 --- a/GLIMMPS_pipline/data_download_process/repMerge.sh +++ /dev/null @@ -1,22 +0,0 @@ -#!/bin/bash -## merge the replicates for each individual -## Authour: Yungang Xu (yungang.xu@hotmail.com) -##----------Arguments---------- -## $1 individual list file, one ID per line. -##----------Usgae---------- -## bash repMerge.sh CEU.samples.txt -## Output: merged/_1.fq.gz and merged/_2.fq.gz for each individual with ID . - -doMerge(){ - fq1=`ls $1*_1*` - fq2=`ls $1*_2*` - cat $fq1 > merged/$1'_1.fq.gz' - cat $fq2 > merged/$1'_2.fq.gz' - echo $1 $fq1 >> merge.log.txt - echo $1 $fq2 >> merge.log.txt -} - -while read -r line -do - doMerge $line -done < $1 diff --git a/GLIMMPS_pipline/data_download_process/vcf2plink.sh b/GLIMMPS_pipline/data_download_process/vcf2plink.sh deleted file mode 100644 index a3469b3..0000000 --- a/GLIMMPS_pipline/data_download_process/vcf2plink.sh +++ /dev/null @@ -1,21 +0,0 @@ -#!/bin/bash -## -## The purpose of this code is to change the file format from .vcf to .tped and .tfam for downstream calculation -## install vcftools first -## Author: Yungang Xu (yungang.xu@hotmail.com) -##----------Arguments---------- -## $1: chromosome number (1 to 22) -## $2: population id (CEU) -## $3: sample list file (CEU.samples.txt) -## Command parameter: -## --gzvcf: read compressed (gzipped) VCF files directly -## --plink-tped: outputs the genotype data in the PLINK transposed format with suffixes ".tped" and ".tfam" -## --keep: Provide files containing a list of individuals to include in subsequent analysis. -##--------Usage---------- -## bash vcf2plink.sh 1 CEU CEU.samples.txt - -vcf_path='path/to/folder/of/all/vcf_files/' ## change this accordingly -samples='path/to/Geuvadis/'$2'/'$3 ## change this accordingly -mkdir -p SNPs_plink -vcftools --gzvcf /mnt/isilon/xing_lab/aspera/PAIRADISE/YG_test/allVCFs/ALL.chr$1.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz --plink-tped --out SNPs_plink/$2.plink.$1 --keep $samples - diff --git a/GLIMMPS_pipline/data_download_process/vcfDownloader.sh b/GLIMMPS_pipline/data_download_process/vcfDownloader.sh deleted file mode 100644 index 576280a..0000000 --- a/GLIMMPS_pipline/data_download_process/vcfDownloader.sh +++ /dev/null @@ -1,14 +0,0 @@ -#!/bin/bash -## batch download the vcf files from 1000 Genome ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ -## one vcf.gz file for each chromosome -## -## Author: Yungang Xu (yungang.xu@hotmail.com) -##--------------Arguments----------------- -## NONE -##--------------Usage----------------- -## bash vcfDownloader.sh - -for i in {1..22}; -do -wget ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ALL.chr${i}.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz; -done