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build.xml
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<project name="Jmol" default="main" basedir=".">
<!--
DocumentId $Id$
-->
<!--
Developer note from Bob Hanson, 11/2013
The Jmol project uses resources from two other projects, JSmol and JSpecView.
You can modify Jmol without those projects, but both of these projects share code
from Jmol and, though separate projects, provide the files in Jmol for final distribution.
Required checkouts include:
svn+ssh://svn.code.sf.net/p/jsmol/code, Trunk:trunk
svn+ssh://svn.code.sf.net/p/jspecview/svn:dev2/JSpecView
svn+ssh://svn.code.sf.net/p/jspecview/svn:dev2/JSpecViewLib
Relevant files created in this project by build scripts in those projects include:
appletweb/jsmol.zip
jars/JSpecView.jar
appletweb/jsmol.zip is created using:
JSmol/build_01_fromjmol.xml
JSmol/build_02_fromjspecview.xml
JSmol/build_03b_tojs.xml
jars/JSpecView.jar is created using
JSpecviewLib/build.xml
JSpecview/build.xml
Note that if you modify Jmol source without also running the JSmol build scripts,
then JSmol will not reflect your modifications.
The overall sequence for full HTML5 code creation
when the Jmol or JSpecView code is modified, is as follows:
1) Do all coding modifications in the Jmol and JSpecView projects. Never modify JSmol/src.
2) Build JSpecViewLib and JSpecView if there are changes there.
The JSpecView*.jar files will be copied into this project.
3) Build JSmol using the build_01.., build_02.., build_03b..
jsmol.zip will be created and copied to appletweb/.
Note that I have had trouble with signjar ramdomly stopping with an IOException.
I just do it a second time, and it works.
[This tracked down to http://tsa.starfieldtech.com on Apr 9, 2014]
Bob Hanson [email protected] 11/26/2013
-->
<!-- Contributions -->
<!-- <for list ...> construct needs ant-contrib.jar -->
<taskdef resource="net/sf/antcontrib/antlib.xml">
<classpath>
<pathelement location="tools/ant-contrib.jar" />
</classpath>
</taskdef>
<!-- pull developer-specific settings from their home directory -->
<property file="${user.home}/.jmol.build.properties" />
<!-- compile options -->
<property name="build.sysclasspath" value="ignore" />
<property name="build.compiler" value="javac1.6" />
<!-- for some reason, I can't get ant to use this ${java.version}
property as the value of the source parameter -->
<property name="java.version" value="1.6" />
<property name="debug" value="on" />
<property name="deprecation" value="off" />
<property name="optimization" value="off" />
<copy todir="" >
<fileset dir="src/org/jmol/viewer/">
<include name="Jmol.properties" />
</fileset>
<filterchain>
<striplinecomments>
<comment value="#" />
</striplinecomments>
<linecontains>
<contains value="Jmol.___" />
</linecontains>
</filterchain>
</copy>
<property file="Jmol.properties" prefix="Jmol.properties" />
<property name="version" value="${Jmol.properties.Jmol.___JmolVersion}" />
<propertyregex property="version"
override = "true"
input="${version}"
regexp='"'
replace=""
global="true"
/>
<echo message="version=${version}" />
<property name="jvxl_version" value="0.1" />
<input message="private property file:" addproperty="Private.propertyFile" defaultValue="none" />
<if><available file="${Private.propertyFile}" /><then>
<property file="${Private.propertyFile}" />
<echo>using ${Private.keystore} ${Private.storetype}</echo>
</then></if>
<property name="tests.source.dir" value="source-tests" />
<property name="lib.dir" value="jars" />
<property name="plugin.dir" value="plugin-jars" />
<property name="appjars.dir" value="build/appjars" />
<property name="classes.dir" value="build/classes" />
<property name="test-classes.dir" value="build/test-classes" />
<property name="applet.classes.dir" value="build/applet-classes" />
<property name="apisio.classes.dir" value="build/apisio-classes" />
<property name="tests.dir" value="build/unit.tests" />
<property name="javadoc.dir" value="build/javadoc" />
<property name="jmol.applet.web.dir" value="appletweb" />
<property name="docbook-xsl" value="docbook-xsl-1.76.1" />
<property name="docbook-xml" value="docbook-xml-4.4" />
<property name="naga.jar" value="naga-3_0.jar" />
<property name="commons-cli.jar" value="commons-cli-1.2.jar" />
<property name="saxon.jar" value="saxon.jar" />
<property name="saxon.main" value="com.icl.saxon.StyleSheet" />
<property name="selfsign.store" value="ca-cert/selfSignedCertificate/selfSignedCertificate.store" />
<property name="selfsign.storetype" value="jks" />
<property name="selfsign.storepass" value="selfSignedCertificate" />
<property name="selfsign.alias" value="selfSignedCertificate" />
<property name="tsa.url" value="http://timestamp.globalsign.com/scripts/timestamp.dll" />
<!-- property name="tsa.url" value="http://tsa.starfieldtech.com" / -->
<!-- http://timestamp.globalsign.com/scripts/timestamp.dll or http://tsa.starfieldtech.com/, which stopped working 3/27/14 and again on 4/8/14 -->
<!-- you can set this by defining it in ~/.jmol.build.properties -->
<property name="keystore.name" value="Must be set by user." />
<!-- this value is required if you are building the .NET DLL, it must point to the IKVM/bin directory -->
<property name="ikvm.home" value="Must be set by user." />
<property file="proxy.properties" />
<import file="tools/build-i18n.xml"/>
<path id="project.class.path">
<fileset dir="${lib.dir}">
<include name="*.jar" />
</fileset>
</path>
<path id="applet-project.class.path">
<fileset dir="${lib.dir}">
<include name="*.jar" />
</fileset>
</path>
<path id="apisio-project.class.path">
<fileset dir="${lib.dir}">
<!-- include name="${vecmath.jar}" / -->
<include name="netscape.jar" />
<include name="gnujaxp.jar" />
</fileset>
</path>
<target name="main" id="main" depends="init,jar,applet-jar,signed-applet,smiles-applet-jar"/>
<target name="all" id="all" depends="doc,main"/>
<target name="init" id="init">
<tstamp/>
</target>
<target name="initFailure" id="initFailure">
<fail message="Init failed. See messages above." />
</target>
<target name="setup" id="setup">
<condition property="docbook-xsl.uptodate">
<and>
<uptodate targetfile="build/${docbook-xsl}"
srcfile="doc/${docbook-xsl}.tar.gz" />
<uptodate targetfile="build/${docbook-xsl}.timestamp"
srcfile="build/${docbook-xsl}" />
</and>
</condition>
<condition property="docbook-xml.uptodate">
<and>
<uptodate targetfile="build/docbook-xml"
srcfile="doc/${docbook-xml}.zip" />
<uptodate targetfile="build/docbook-xml.timestamp"
srcfile="build/docbook-xml" />
</and>
</condition>
<condition property="jmolGuide.uptodate">
<and>
<uptodate targetfile="build/doc/JmolUserGuide/index.html">
<srcfiles dir="doc/source"
includes="JmolGuide.docbook.xml, guide/*.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolUserGuide_fr/index.html">
<srcfiles dir="doc/source"
includes="JmolGuide_fr.docbook.xml, guide/*_fr.docbook.xml"/>
</uptodate>
</and>
</condition>
<condition property="jmolHistory.uptodate">
<and>
<uptodate targetfile="build/doc/JmolHistory/ChangeLog.html">
<srcfiles dir="doc/source"
includes="JmolHistory.xml,JmolHistoryToHtml.xsl,history/changes.xml" />
</uptodate>
<uptodate targetfile="build/doc/JmolHistory/ChangeLog_fr.html">
<srcfiles dir="doc/source"
includes="JmolHistory_fr.xml,JmolHistoryToHtml.xsl,history/changes_fr.xml" />
</uptodate>
<uptodate targetfile="build/doc/JmolHistory/ChangeLog_nl.html">
<srcfiles dir="doc/source"
includes="JmolHistory_nl.xml,JmolHistoryToHtml.xsl,history/changes_nl.xml" />
</uptodate>
<uptodate targetfile="build/doc/JmolHistory/ChangeLog_ro.html">
<srcfiles dir="doc/source"
includes="JmolHistory_ro.xml,JmolHistoryToHtml.xsl,history/changes_ro.xml" />
</uptodate>
</and>
</condition>
<condition property="jmolDevelopersGuide.uptodate">
<and>
<uptodate targetfile="build/doc/JmolDevelopersGuide.html">
<srcfiles dir="doc/source"
includes="JmolDevelopersGuide.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolDevelopersGuide_fr.html">
<srcfiles dir="doc/source"
includes="JmolDevelopersGuide_fr.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolDevelopersGuide_de.html">
<srcfiles dir="doc/source"
includes="JmolDevelopersGuide_de.docbook.xml"/>
</uptodate>
</and>
</condition>
<condition property="jmolAppletGuide.uptodate">
<and>
<uptodate targetfile="build/doc/JmolAppletGuide.html">
<srcfiles dir="doc/source"
includes="JmolAppletGuide.docbook.xml, applet/*.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolAppletGuide_fr.html">
<srcfiles dir="doc/source"
includes="JmolAppletGuide_fr.docbook.xml, applet/*_fr.docbook.xml"/>
</uptodate>
<uptodate targetfile="build/doc/JmolAppletGuide_de.html">
<srcfiles dir="doc/source"
includes="JmolAppletGuide_de.docbook.xml"/>
</uptodate>
</and>
</condition>
<available classname="${saxon.main}"
classpath="${lib.dir}/${saxon.jar}"
property="xsl.available"/>
<uptodate property="javadoc.uptodate" targetfile="${javadoc.dir}/index.html">
<srcfiles dir="src" includes="**/*.java, **/*.html" />
</uptodate>
<available file="${keystore.name}" property="keystore.present" />
<!-- Optional proxy settings (if defined) -->
<condition property="proxyHost"
value="-Dhttp.proxyHost=${http.proxyHost}" >
<not>
<equals arg1="http.proxyHost" arg2="" />
</not>
</condition>
<condition property="proxyPort"
value="-Dhttp.proxyPort=${http.proxyPort}" >
<not>
<equals arg1="http.proxyPort" arg2="" />
</not>
</condition>
</target>
<target id="classes" name="classes" depends="init">
<mkdir dir="${classes.dir}"/>
<javac srcdir="src" destdir="${classes.dir}" encoding="UTF8"
debug="${debug}" deprecation="${deprecation}"
optimize="${optimization}" source="1.6" target="1.6">
<classpath refid="project.class.path" />
<exclude name="astex/**/*.java"/>
<exclude name="java_cup/**/*.java"/>
</javac>
<copy todir="${classes.dir}" >
<fileset dir="src">
<include name="**/license.txt" />
<include name="**/*.jpg" />
<include name="**/*.gif" />
<include name="**/*.png" />
<include name="**/*.html" />
<include name="**/*.js" />
<include name="**/*.dtd" />
<include name="**/*.properties" />
<include name="**/Properties/*" />
<!-- for testing internationalisation only:
comment out the 2 lines above and uncomment the following 3 lines -->
<!--
<include name="**/JmolPop*.properties" />
<include name="**/Properties/Jmol.properties" />
<include name="**/Properties/Jmol-resources.properties" />
-->
<include name="**/Data/*" />
<include name="**/*.txt" />
</fileset>
</copy>
<copy file="Jmol.properties" tofile="${classes.dir}/org/jmol/viewer/Jmol.properties" />
</target>
<target name="applet-classes" id="applet-classes" depends="init">
<mkdir dir="${applet.classes.dir}"/>
<copy todir="${applet.classes.dir}" >
<fileset dir="src">
<include name="org/jmol/modelkit/images/*" />
</fileset>
</copy>
<property name="build.compiler" value="javac1.6" />
<!--
bh 20131124 changed to 1.6, 1.6
mth 20040713 ... with the Sun Java 1.5 compiler the default
source code version is 1.5. And one cannot generate code for
a 1.1 virtual machine from 1.5 source. Therefore, in order to
compile for the 1.1 jvm, we need to specify that the source
version is 1.3. (Note that we cannot use source=1.4 because
of assertions)
miguel 20041121
I do not know recall exactly what I meant by the statement
in (parentheses) above. I *think* that what I was saying
is that if you say 'source=1.4' then one also cannot
generate code for a 1.1 jvm, because of the special
support for assertions (which were introduced in 1.4).
bob 2010.02.01
changed source="1.3" target="1.1"
to source="1.4" target="1.4"
bob 2010.04.29
in order to allow for faster BitSet methods
changed source="1.4" target="1.4"
to source="1.5" target="1.5"
bob 2010.05.19
changed just the applet classes back to:
source="1.4" target="1.4"
all support for previous versions removed
-->
<javac srcdir="src" destdir="${applet.classes.dir}"
debug="${debug}" deprecation="${deprecation}"
optimize="${optimization}"
source="1.6" target="1.6" encoding="UTF8"
includesfile="applet.classes"
classpathref="applet-project.class.path" />
<copy todir="${applet.classes.dir}" >
<fileset dir="src">
<include name="org/jmol/minimize/forcefield/data/*.txt" />
<include name="jmol75x29x8.gif" />
</fileset>
</copy>
<copy todir="${applet.classes.dir}" >
<fileset dir="src">
<include name="org/jmol/quantum/*.txt" />
</fileset>
</copy>
<copy file="Jmol.properties" tofile="${applet.classes.dir}/org/jmol/viewer/Jmol.properties" />
<copy todir="${applet.classes.dir}" >
<fileset dir="${classes.dir}">
<include name="**/JmolApplet/*/*.class" />
</fileset>
<fileset dir="src">
<include name="**/license.txt" />
</fileset>
</copy>
</target>
<target name="apisio-classes" id="apisio-classes" depends="init">
<mkdir dir="${apisio.classes.dir}"/>
<javac srcdir="src" destdir="${apisio.classes.dir}"
debug="${debug}" deprecation="${deprecation}"
optimize="${optimization}" source="1.6" encoding="UTF8"
includesfile="apisio.classes"
classpathref="apisio-project.class.path" />
<copy todir="${apisio.classes.dir}" >
<fileset dir="src">
<include name="**/g3d/*.html" />
</fileset>
</copy>
</target>
<target name="check.cdkjars" id="check.cdkjars">
<condition property="cdkjars.uptodate">
<and>
<uptodate targetfile="${appjars.dir}/org/openscience/cdk">
<srcfiles dir="${lib.dir}" includes="jmol2cdk.jar"/>
</uptodate>
<uptodate targetfile="build/cdkjars.timestamp"
srcfile="${appjars.dir}/org/openscience/cdk"/>
</and>
</condition>
</target>
<target name="check.pluginjars" id="check.pluginjars">
<condition property="pluginjars.uptodate">
<and>
<uptodate targetfile="${appjars.dir}/org/openscience/cdkplugin">
<srcfiles dir="${plugin.dir}" includes="dirbrowser.jar"/>
<srcfiles dir="${plugin.dir}" includes="dadmlbrowser.jar"/>
</uptodate>
<uptodate targetfile="build/pluginjars.timestamp"
srcfile="${appjars.dir}/org/openscience/cdkplugin"/>
</and>
</condition>
</target>
<target name="check.libjars" id="check.libjars">
<condition property="libjars.uptodate">
<and>
<uptodate targetfile="${appjars.dir}">
<srcfiles dir="${lib.dir}" includes="${naga.jar}"/>
<srcfiles dir="${lib.dir}" includes="${commons-cli.jar}"/>
<srcfiles dir="${lib.dir}" includes="JSpecView.jar"/>
</uptodate>
<uptodate targetfile="build/libjars.timestamp"
srcfile="${appjars.dir}"/>
</and>
</condition>
</target>
<!-- target name="appjars" id="appjars" depends="libjars, cdkjars, pluginjars"/>
<target name="cdkjars" id="cdkjars" depends="check.cdkjars" unless="cdkjars.uptodate">
<delete file="build/cdkjars.timestamp"/>
<mkdir dir="${appjars.dir}"/>
<unjar dest="${appjars.dir}" src="${lib.dir}/jmol2cdk.jar"/>
<touch file="build/cdkjars.timestamp"/>
</target>
<target name="pluginjars" id="pluginjars" depends="check.pluginjars" unless="pluginjars.uptodate">
<delete file="build/pluginjars.timestamp"/>
<mkdir dir="${appjars.dir}"/>
<unjar dest="${appjars.dir}" src="${plugin.dir}/dirbrowser.jar"/>
<unjar dest="${appjars.dir}" src="${plugin.dir}/dadmlbrowser.jar"/>
<touch file="build/pluginjars.timestamp"/>
</target -->
<target name="libjars" id="libjars" depends="check.libjars" unless="libjars.uptodate">
<delete file="build/libjars.timestamp"/>
<mkdir dir="${appjars.dir}"/>
<!-- unjar dest="${appjars.dir}" src="${lib.dir}/${vecmath.jar}"/ -->
<!-- unjar dest="${appjars.dir}" src="${lib.dir}/Acme.jar"/ -->
<!-- unjar dest="${appjars.dir}" src="${lib.dir}/${itext.jar}"/ -->
<unjar dest="${appjars.dir}" src="${lib.dir}/${naga.jar}"/>
<unjar dest="${appjars.dir}" src="${lib.dir}/${commons-cli.jar}"/>
<unjar dest="${appjars.dir}" src="${lib.dir}/JSpecView.jar"/>
<delete dir="${appjars.dir}/javajs" />
<delete dir="${appjars.dir}/org/jmol" />
<delete dir="${appjars.dir}/META-INF" />
<touch file="build/libjars.timestamp"/>
</target>
<target name="jar" id="jar"
depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars,main-i18n">
<copy todir="${classes.dir}/org/openscience/jmol/Data/guide" >
<fileset dir="build/doc/JmolUserGuide">
<include name="**/*.html" />
</fileset>
</copy>
<copy todir="${classes.dir}/org/openscience/jmol/Data/guide_fr" >
<fileset dir="build/doc/JmolUserGuide_fr">
<include name="**/*.html" />
</fileset>
</copy>
<copy todir="${classes.dir}/org/openscience/jmol/Data" >
<fileset dir="build/doc/JmolHistory">
<include name="**/*.html" />
</fileset>
</copy>
<jar destfile="build/Jmol.jar"
manifest="manifest/application.txt">
<fileset dir="${classes.dir}" >
<exclude name="**/.*" />
<exclude name="**/*.dx" />
<exclude name="ant/**" />
<include name="com/**" />
<include name="javajs/api/**" />
<include name="javajs/awt/**" />
<include name="javajs/export/**" />
<include name="javajs/img/**" />
<include name="javajs/util/**" />
<exclude name="**/Test*.class" />
<exclude name="**/jmol/jcamp/**" />
<exclude name="**/jmol/applet/*" />
<include name="**/jmol/**" />
<exclude name="**/app/JmolData.class" />
</fileset>
<fileset dir="${appjars.dir}" includes="**/*"/>
<fileset dir="src/org/jmol/translation/Jmol" includes="Messages*.class"/>
<fileset dir="src/org/jmol/translation/JmolApplet" includes="Messages*.class"/>
</jar>
<antcall target="sign-jar-file">
<param name="sign-jar-file-dir" value="build" />
<param name="sign-jar-file-name" value="Jmol.jar" />
</antcall>
<jar destfile="build/JmolData.jar"
manifest="manifest/applicationData.txt">
<fileset dir="${classes.dir}" >
<exclude name="**/.*" />
<exclude name="**/*.dx" />
<exclude name="**/Test*.class" />
<exclude name="ant/**" />
<exclude name="com/**" />
<include name="javajs/api/**" />
<include name="javajs/awt/**" />
<include name="javajs/export/**" />
<include name="javajs/img/**" />
<include name="javajs/util/**" />
<include name="**/jmol/**" />
<exclude name="**/jmol/_documents/**" />
<exclude name="**/jmol/applet/**" />
<exclude name="**/jmol/*js/**" />
<exclude name="**/jmol/console/**" />
<exclude name="**/jmol/popup/**" />
<exclude name="org/jmol/util/BitSet32.class" />
<exclude name="**/openscience/jmol/Data/**" />
<exclude name="**/openscience/jmol/app/Jmol.class" />
<exclude name="**/openscience/jmol/app/images/**" />
<exclude name="**/openscience/jmol/app/jmolpanel/**" />
<exclude name="**/openscience/jmol/app/webexport/**" />
</fileset>
<fileset dir="${appjars.dir}" includes="**/cli/** **/naga/**" />
<fileset dir="src/org/jmol/translation/Jmol" includes="Messages*.class"/>
<fileset dir="src/org/jmol/translation/JmolApplet" includes="Messages*.class"/>
</jar>
<antcall target="sign-jar-file">
<param name="sign-jar-file-dir" value="build" />
<param name="sign-jar-file-name" value="JmolData.jar" />
</antcall>
<copy todir="build">
<fileset dir=".">
<include name="jmol" />
<include name="jmol.bat" />
<include name="jmol.sh" />
</fileset>
</copy>
<jar destfile="build/Jvxl.jar"
manifest="manifest/jvxl.txt">
<fileset dir="${classes.dir}" >
<exclude name="**/.*" />
<exclude name="**/*.dx" />
<exclude name="**/Test*.class" />
<include name="org/openscience/jvxl/*" />
<include name="org/jmol/api/**" />
<include name="org/jmol/atomdata/**" />
<include name="org/jmol/c/**" />
<include name="org/jmol/g3d/**" />
<include name="org/jmol/jvxl/**" />
<include name="org/jmol/io/**" />
<include name="org/jmol/util/**" />
<include name="org/jmol/viewer/JmolConstants.class" />
</fileset>
<fileset dir="${appjars.dir}" includes="**/*"/>
</jar>
<antcall target="sign-jar-file">
<param name="sign-jar-file-dir" value="build" />
<param name="sign-jar-file-name" value="Jvxl.jar" />
</antcall>
<!--
<jar destfile="ChimeToJmol.jar"
manifest="manifest/chimetojmol.txt">
<fileset dir="${classes.dir}" >
<include name="org/openscience/chimetojmol/*" />
</fileset>
</jar>
<antcall target="sign-jar-file">
<param name="sign-jar-file-dir" value="build" />
<param name="sign-jar-file-name" value="ChimeToJmol.jar" />
</antcall>
-->
</target>
<target name="apis-jar" id="apis-jar" depends="init,apisio-classes">
<jar destfile="jmolApis.jar">
<fileset dir="${apisio.classes.dir}" >
<include name="org/jmol/api/**" />
</fileset>
<fileset dir="." >
<include name="LICENSE.txt"/>
</fileset>
</jar>
</target>
<target name="io-jar" id="io-jar" depends="init,apisio-classes">
<jar destfile="jmolIO.jar">
<fileset dir="${apisio.classes.dir}" >
<include name="org/jmol/adapter/smarter/**" />
</fileset>
<fileset dir="." >
<include name="LICENSE.txt"/>
</fileset>
</jar>
</target>
<target name="applet-jar" id="applet-jar"
depends="applet-classes">
<delete dir="build">
<include name="JmolApplet*"/>
</delete>
<echo message="Creating JmolApplet.jar" />
<jar destfile="build/JmolApplet.jar"
manifest="manifest/appletMonolithic.txt" index="true" >
<fileset dir="${applet.classes.dir}" >
<include name="**/*" />
<exclude name="JmolSmiles*" />
<exclude name="org/jmol/dialog/**/*" />
<exclude name="org/jmol/export/**/*" />
<exclude name="org/jmol/multitouch/**/*" />
<exclude name="org/openscience/**/*" />
<exclude name="com/sparshui/**/*" />
<exclude name="com/json/**/*" />
</fileset>
</jar>
<echo message="Creating JmolApplet0*.jar" />
<!--
<for list="${all.JmolApplet.languages}" delimiter=","
param="current.Jmol.language">
<sequential>
<jar destfile="build/JmolApplet0_i18n_@{current.Jmol.language}.jar"
manifest="manifest/applet_i18n.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/translation/JmolApplet/@{current.Jmol.language}/**" />
</fileset>
</jar>
</sequential>
</for>
-->
<jar destfile="build/JmolApplet0_Image.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/dialog/**" />
<include name="org/jmol/image/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Minimize.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/minimize/**/**" />
<include name="org/jmol/modelkit/images/**" />
<include name="org/jmol/modelkit/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Navigate.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/navigate/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Console.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/console/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_JSV.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/jsv/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Popup.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/popup/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersMolXyz.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/molxyz/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersCif.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/cif/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersPdb.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/pdb/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersQuantum.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/quantum/**" />
<include name="org/jmol/quantum/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersPyMOL.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/pymol/**" />
<include name="org/jmol/rendercgo/**" />
<include name="org/jmol/shapecgo/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersMore.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/more/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersSimple.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/simple/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersXtal.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/xtal/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ReadersXml.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/xml/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ScriptExt.jar" manifest="manifest/applet.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/scriptext/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ShapeBio.jar" manifest="manifest/applet.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/modelsetbio/**" />
<include name="org/jmol/dssx/**" />
<include name="org/jmol/renderbio/**" />
<include name="org/jmol/shapebio/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ShapeSpecial.jar" manifest="manifest/applet.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/renderspecial/**" />
<include name="org/jmol/shapespecial/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_ShapeSurface.jar" manifest="manifest/applet.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/jvxl/**" />
<include name="org/jmol/shapesurface/**" />
<include name="org/jmol/rendersurface/**" />
</fileset>
</jar>
<jar destfile="build/JmolApplet0_Smiles.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/smiles/**" />
</fileset>
</jar>
<!--
<jar destfile="build/JmolApplet0_Spectrum.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/spectrum/**" />
</fileset>
</jar>
-->
<jar destfile="build/JmolApplet0_Symmetry.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/symmetry/**" />
</fileset>
</jar>
<!-- vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv -->
<!-- changes to this must be replicated below for the signed applet -->
<jar destfile="build/JmolApplet0.jar" manifest="manifest/applet0.txt"
index="true" >
<fileset dir="${applet.classes.dir}">
<include name="JmolApplet*.class" />
<include name="jmol75x29x8.gif" />
<include name="javajs/api/**" />
<include name="javajs/awt/**" />
<include name="javajs/img/**" />
<include name="javajs/export/**" />
<include name="javajs/util/**" />
<include name="org/jmol/adapter/smarter/**" />
<include name="org/jmol/api/**" />
<include name="org/jmol/applet/**" />
<include name="org/jmol/atomdata/**" />
<include name="org/jmol/awt/**" />
<include name="org/jmol/bspt/**" />
<include name="org/jmol/c/**" />
<include name="org/jmol/g3d/**" />
<include name="org/jmol/geodesic/**" />
<include name="org/jmol/i18n/**" />
<include name="org/jmol/java/**" />
<include name="org/jmol/modelset/**" />
<include name="org/jmol/script/**" />
<include name="org/jmol/shape/**" />
<include name="org/jmol/render/**" />
<include name="org/jmol/thread/**" />
<include name="org/jmol/util/**" />
<include name="org/jmol/io/**" />
<exclude name="org/jmol/util/BitSet32.class" />
<include name="org/jmol/viewer/**" />
</fileset>
<!-- changes to this must be replicated below for the all-permissions applet -->
<indexjars>
<!-- no export or multitouch here - this is the sandboxed applet -->
<pathelement path="build/JmolApplet0_Console.jar" />
<pathelement path="build/JmolApplet0_Image.jar" />
<pathelement path="build/JmolApplet0_JSV.jar" />
<pathelement path="build/JmolApplet0_Minimize.jar" />
<pathelement path="build/JmolApplet0_Navigate.jar" />
<pathelement path="build/JmolApplet0_Popup.jar" />
<pathelement path="build/JmolApplet0_ReadersCif.jar" />
<pathelement path="build/JmolApplet0_ReadersPdb.jar" />
<pathelement path="build/JmolApplet0_ReadersMolXyz.jar" />
<pathelement path="build/JmolApplet0_ReadersMore.jar" />
<pathelement path="build/JmolApplet0_ReadersQuantum.jar" />
<pathelement path="build/JmolApplet0_ReadersPyMOL.jar" />
<pathelement path="build/JmolApplet0_ReadersSimple.jar" />
<pathelement path="build/JmolApplet0_ReadersXml.jar" />
<pathelement path="build/JmolApplet0_ReadersXtal.jar" />
<pathelement path="build/JmolApplet0_ScriptExt.jar" />
<pathelement path="build/JmolApplet0_ShapeBio.jar" />
<pathelement path="build/JmolApplet0_ShapeSpecial.jar" />
<pathelement path="build/JmolApplet0_ShapeSurface.jar" />
<pathelement path="build/JmolApplet0_Smiles.jar" />
<pathelement path="build/JmolApplet0_Symmetry.jar" />
<!-- <pathelement path="build/JmolApplet0_Spectrum.jar" />
<fileset dir="build" includes="JmolApplet0_i18n_*.jar" /> -->
</indexjars>
</jar>
<echo message="creating JmolLib.jar" level="info" />
<jar destfile="build/JmolLib.jar"
manifest="manifest/jmolLib.txt" index="true" >
<fileset dir="${applet.classes.dir}" >
<include name="**/*" />
<exclude name="JmolSmiles*" />
<exclude name="org/jmol/applet/**/*" />
<exclude name="org/jmol/appletjs/**/*" />
<exclude name="org/jmol/awt/**/*" />
<exclude name="org/jmol/awtjs/**/*" />
<exclude name="org/jmol/awtjs2d/**/*" />
<exclude name="org/jmol/console/**/*" />
<exclude name="org/jmol/consolejs/**/*" />
<exclude name="org/jmol/dialog/**/*" />
<exclude name="org/jmol/export/**/*" />
<exclude name="org/jmol/exportjs/**/*" />
<exclude name="org/jmol/modelkit/**/*" />
<exclude name="org/jmol/multitouch/jni/*" />
<exclude name="org/jmol/multitouch/sparshui/*" />
<exclude name="org/jmol/popup/**/*" />
<exclude name="org/jmol/translation/**/*" />
<exclude name="org/openscience/**/*" />
<!-- just need sparshUI gestureType.class -->
<exclude name="com/sparshui/client/*" />
<exclude name="com/sparshui/common/**/**/*" />
<exclude name="com/sparshui/cpp/*" />
<exclude name="com/sparshui/gestures/*" />
<exclude name="com/sparshui/inputdevice/*" />
<exclude name="com/sparshui/server/*" />
<exclude name="com/json/**/*" />
<exclude name="JmolApplet*" />
</fileset>
</jar>
</target>
<target name="signed-applet" id="signed-applet" depends="applet-jar">
<delete dir="build">
<include name="JmolAppletSigned*"/>
</delete>
<echo message="Creating JmolAppletSigned.jar" />
<jar destfile="build/JmolAppletSigned.jar"
manifest="manifest/appletMonolithicSigned.txt" index="true" >
<fileset dir="${applet.classes.dir}" >
<include name="**/*" />
<exclude name="JmolSmiles*" />
<exclude name="javajs/swing/**" />
<exclude name="org/openscience/**/*" />
</fileset>
</jar>
<echo message="Creating JmolAppletsigned0*.jar" />
<!--
<for list="${all.JmolApplet.languages}" delimiter=","
param="current.Jmol.language">
<sequential>
<jar destfile="build/JmolAppletSigned0_i18n_@{current.Jmol.language}.jar"
manifest="manifest/applet_i18nSigned.txt" >
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/translation/JmolApplet/@{current.Jmol.language}/**" />
</fileset>
</jar>
</sequential>
</for>
-->
<jar destfile="build/JmolAppletSigned0_Console.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/console/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Image.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/dialog/**" />
<include name="org/jmol/image/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_JSV.jar" manifest="manifest/applet.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/jsv/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Minimize.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/minimize/**/**" />
<include name="org/jmol/modelkit/**" />
<include name="org/jmol/modelkit/images/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_MultiTouch.jar"
manifest="manifest/appletSigned.txt" index="true" >
<fileset dir="${applet.classes.dir}" >
<include name="org/jmol/multitouch/**" />
<include name="com/sparshui/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Navigate.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/navigate/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_Popup.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/popup/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersMolXyz.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/molxyz/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersCif.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/cif/**" />
</fileset>
</jar>
<jar destfile="build/JmolAppletSigned0_ReadersPdb.jar" manifest="manifest/appletSigned.txt">
<fileset dir="${applet.classes.dir}">
<include name="org/jmol/adapter/readers/pdb/**" />