Same node name in the output

[chnyuch]

Hi, I've just recently started using the indelMaP_ASR.py and I noticed in the output all node names were labeled the same.

For example in the tree file and the sequence file

(cco_1:0.00118669,((fal_1:0.0228959,tgu_1:0.0186591)1:0.00144183,pma_1:0.0126389)1:0.00987282)ROOT;

ROOT
ATGGCGGGCGCGGGTGGGCGGGCGGCCGCCTCCTCCACCTCG---GAGTCTTACACGGGCCGCGGCTCTTCCACGCCGGGCGTGGGCGGGCGAGCGGAGCAGACGTTCCGCTACACCCTGGGGCTTCTGCAGACGCCGCACAGCACGGAGAGCAGCGCGGGCTCCTCCAGCGGTGGGGCACAGCCGGGCGGCTCCAGCGGGGAAGGTCTCGCAGCCGGCCGGGCCGCCGGGAGCGGCGCGATGAAGCCAGCGGCTTCCGAAAGAGGAGAATCATATTTTGGGGACAAAAGTTCTTGTGTAGAAAATGCTAACACCTTGAATCTCACGAGTTCTTCTTCTGTGCGAGGCCTGAATAGCACACGTGTAGGAAAAACACCTCTCTCTTCTGGTAGATCTGTTTGCAGGAGCCATACCCCTCTTATGGGATATTCGGTTACATCCTCATCTGCAGTTTCTGCTCATACTGTTGCATCGGTTATTGTAGCTGTAGTAGAAGGAAGAGGCCTTGCCAGAGGTGAAGTAGGGATGGCCAGTATAGACTTAAAAAATCCTGAGGTGATATTATCACAATTTGCAGACAACACAACTTATGCCAAGGTTATTACTAAACTCAAGATTTTAACACCGCTAGAAATAATAATGTCAAACACTGCTTGTGATGCAGGGAACACAACAAAATTGTTCAGTCTGATAACGGAGCATTTCAAGAATGTGACTTTTACAACTGTCCAGAGAAAATACTTCAATGAAACAAAGGGTTTGGAGTACATAGAACAATTGTGTGCATCTGAATTTAGCACCATTTTCATGGAGGTCCAATCGAAGTATTACTGTCTTGCAGCTGCTGCTGCTTTGCTAAAATATGTTGAATTTATTCAAAACGCCGTTTATGCTCCTAAATCGCTCAAGGTGCGTTTCCAGGGGAGCGAGAAAACAGCTATGATAGATTCGTCATCAGCACAAAATCTTGAACTGGTAATTAATAACAGAGATTCTCGGAATGGTCACACACTTCTTGGTGTTCTAAATTACACTAAAACTCCCGGTGGAAGTCGAAGACTTAGATCCAATATCCTGGAACCTCTAGTTGATGCTGAAACAATTAACACAAGACTGGACTGTGTTCAGGAATTACTCCAGGATGAGGAGCTCTTTTTTGGTCTTCAAGCAGTTATCTCAAAATTCCTGGACACAGAACAACTACTTTCAGTTTTGGTACAAATTCCAAAGCAAGATACAGTTAAAACTGCTGAATCAAAAATAACTAATTTAATCTACCTGAAGCATACCTTAGAACTTGTGGAGCCTCTGAAAGCTGCTTTAAGAAGCTGTAGCACACAGCTGCTAAAGGCTTATTACAATTCTCTTGAAGATACAAGATTTGGAATTATACTTGAAAAGATTACAACTGTAATTAATGATGATACAAGATACACAAAAGGATGTCTGAGTATGAGGACCCAGAAGTGCTATGCTGTTAAGCCTAACATCAATGAATTCCTTGACATAGCTCGTAGAACATACACAGAAATTGTTGATGACATAGCAGGTATGATAACGCAACTTGCAGAAAAGTACAGCCTGCCAATGAAAACAAGTTTCAGCTCTGCTCGTGGATTTTTTATCCAGATGAATGCTGATTGTTCAACATTACCTAATGGCCAGCTTCCTTCAGAATTTACAAAGATCACAAAAATGAAAAACACATATAGCTTCACTTCAGCAGATTTAATAAAAATGAATGAAAGATGTCAGGAGTCCCTGAGAGAAATATATCACATGACCTACTTAATAGTGTGTAAACTACTGAATGAGATCTATGAACACATTCATTGCTTATACAAGCTGTCCGACATTGTGTCTATGCTGGATATGCTACTTTCATTTGCCCATGCCTGCACTCTTTCCGATTATGTTCGTCCAGAATTTACCGATACTTTAGCAATCAAGCAGGGATGGCATCCCATTCTTGAAAAGATAGCTATGGAAAAACCTGTGTCTAACAACACGTACCTGACAGAGGGCAACAATTTTGTCATTATTACAGGACCAAATATGAGCGGAAAATCAACATACCTAAAACAGATTGCTCTCTGTCAAATTATGGCACAAATTGGTTCTTATGTCCCAGCAGAGTATTGTTCTTTTCGAATCGCAGAGCAGATTTTTACCAGAATAGGTATGGATGATGATATTGAAACAAATGCATCCACGTTCATGAAGGAAATGAAAGAGATAACGTACATCATACAAAATGCTAATGATAAATCACTCATCATTATTGATGAACTTGGCAGAGGTACCAGTGCTGAAGAAGGTATCGGCATTTGTTATGCTGCCTGTGAATATCTGCTGAATTTAAAGGCATTTACACTGTTTGCTACACACTTCCTGGAACTATGCCATATAGATGCTTTATATCCCAATGTGGAAAACTACCATTTTGAAGTGCAACATGTGAGAAGCAGTGCTGGAAATAAGGAGAAAATTGCTTACACTTACACACTTTCTAAAGGATACACAGAGGAAAAAAACTACGGACTAAAGGCTGCAGAAGTGTCCTCCCTACCATCATGCATAATTTTGGATGCAAAGGAAATCACAAATCACATTGCAAAACAAATTTTGCACAGGCAGAAAAGCACTCCTGAGATGATGAAACAGAGAGCTGCATACCAGTTAGCAATGAGATTGGTTCAGACTGCCAGAAACTCTCGACTGGACCCAGACAGTTTGCGTGTATATTTGAAAGGCCTGAAGAAAAAGTATGAAGCCAGTTGTCCCACACCCGCAAAAATTGATGAGCAACAGTAA
1
ATGGCGGGCGCGGGCGGGCGGGCGGCCGCCTCGGCCACCTCG---GAATCTTACACGGGCCGCGGCTCTTCCACGCCGGGCGTGGGCGGGCGGGCGGAGCAGACGCCCCGCTACACCCTGGGGCTTCTGCAGACGCCGCACAGCTCGGAGAGCACCGGGGGCTCCTCCAGCGGCGGGGCACGGCCGGGCGGCTCCAGCGGGGAAGGCCTCGCAGCCGGCCGGGCCGCCGGGAGCAGCGCGGTGAAGCCGGCGGTTTCCGAAAGGGGAGAATCATATTTTGGGGACAAAAGTTCTTGTGTAGAAAATGCTAACACATTGAATCTCACGAGTTCTTCTTCTGTGCGAGGCCTGAATAGCACATGTATAGGAAAAACACCTCTCTCTTCTGGTAGATCTGGTTGCAGAAGCCATACCCCTCTTATGGGATATTCAGTTACATCCTCATCTGCAGTTTCTGCTCATACTGTTGCATCGGTTATTGTAGCTGTAGTAGAAGGAAGAGGCCTTGCCAGAGGTGAAGTAGGAATGGCCAGTATAGATTTAAAAAATCCTGAGATGATACTATCACAATTTGCAGACAATACAACTTATGCCAAGGTTATTACTAAACTCAAGATTTTAACACCACTAGAAATAATAATGTCAAACACTGCTTGTGATGCAGGGAATACAACAAAATTGTTCAGTCTGATAACGGAGCATTTCAAGAATGTGACTTTTACAACTGTCCAGAGAAAATACTTCAATGAAACAAAGGGTTTGGAGTACATAGAACAATTGTGTGCATCTGAATTTAGCACCATTTTCATGGAAGTCCAATCAAAGTATTACTGTCTTGCAGCTGCTGCAGCTTTGCTAAAATATGTTGAATTTATTCAAAACGCCGTTTATGCTCCTAAATCACTCAAGGTGCGTTTCCAGGGGAGTGAGAAAACAGCTATGATAGATTCATCATCAGCACAAAATCTTGAACTAGTGATTAATAACAGAGATTCTCGGAATGGTCACACACTTCTTGGTGTTCTAAATTACACTAAAACTCCCGGTGGAAGTCGAAGACTTAGATCCAATATCCTGGAACCTCTAGTTGATGCTGAAACAATTAACACAAGACTGGACTGTGTTCAGGAATTACTCCAGGATGAGGAGCTCTTTTTTGGTCTTCAAGCAGTTATCTCAAAATTCCTGGATACAGAACAACTACTTTCAGTTTTGGTACAGATTCCAAAGCAGGATACAGTTAAAACTGCTGAATCAAAAATAACTAATTTAATCTACCTGAAGCATACCTTAGAACTTGTGGAGCCTCTGAAAGCTGCTTTAAGAAGCTGTAACACACAGCTGCTAAAGGCTTATTACAATTCTCTTGAAGATACAAGATTTGGAATTATACTTGAAAAGATTACAACTGTAATTAATGATGATACAAGATACACAAAAGGATGTCTGAGTATGAGGACCCAGAAGTGCTACGCTGTTAAGCCTAACATCAATGAATTCCTTGACATAGCTCGTAGAACATACACAGAAATTGTTGATGACATAGCAGGTATGATAACACAACTTGCAGAAAAGTACAGCCTGCCAATGAAAACAAGTTTCAGCTCTGCTCGTGGATTTTTTATCCAGATGAATGCTGATTGTTCAACATTACCTAATGGCCAGCTTCCTTCAGAATTTACAAAGATCACGAAAATGAAAAACACATATAGCTTCACTTCAGCAGATTTAATAAAAATGAATGAAAGATGTCAGGAGTCCCTGAGAGAAATATATCACATGACCTACTTAATAGTGTGTAAACTACTGAATGAGATCTATGAACACATTCATTGCCTATACAAGCTGTCCGACATTGTGTCTATGCTGGATATGCTGCTTTCATTTGCCCACGCCTGCACTCTTTCCGATTATGTTCGTCCAGAATTTACCGATACTTTAGCAATCAAGCAGGGATGGCATCCCATTCTTGAAAAGATAGCTATGGAAAAACCTGTGTCTAACAACACGTACCTGACAGAGGGCAACAATTTTGTCATTATTACAGGACCAAATATGAGTGGAAAATCAACATACCTGAAACAGATTGCTCTCTGTCAAATTATGGCACAGATTGGTTCTTATGTCCCAGCAGAGTATTGTTCTTTTCGAATCGCAGAGCAGATTTTTACCAGAATAGGTATGGATGATGATATTGAAACAAATGCATCAACATTCATGAAGGAAATGAAAGAGATAACGTACATCATACAAAATGCTAATGATAAATCACTCATCATTATTGATGAACTTGGCAGAGGTACCAGTGCTGAAGAAGGTATTGGCATTTGTTATGCTGCCTGTGAATATCTGTTGAACTTAAAGGCATTTACACTGTTTGCTACACATTTCCTGGAACTATGTCATATAGACGCTTTATATCCCAATGTGGAAAACTACCATTTTGAAGTGCAACATGTGAGAAGCAGTGCTGGAAATAAGGAGAAAATTGCTTACACTTACACACTTTCTAAAGGATACACAGAGGAAAAGAACTACGGACTAAAAGCTGCAGAAGTGTCCTCCCTACCATCATCCATAATTTTGGATGCAAAGGAAATCACAAATCACATTGCAAAACAAATTTTGCACAGGCAGAAAAGCACTCCTGAGATGATGAAACAGAGAGCTGCATACCAGTTAGCAATGAGATTGGTTCAGACTGCCAGAAATTCTCGACTGGACCCTGACAGTTTGCGTGTATATTTGAAAGCCCTGAAGAAAAAGTATGAAGCCAGTTGTCCCACACCCGGAAAAAATGATGAGCAACAGTAA
1
ATGGCGGGCGCGGGCGGGCGGGCCATCGCCTCGGCCACCTCG---GAATCCTACGCGGGCCGCGGCTCTTCCACGCCGGGCGTGGGCGGGCGGGCGGAGCAGACGCCCCGCTACACCCTGGGGCTTCTGCAGACGCCGCACAGCTCGGAGAGCACCGGGGCCTCCTCTAGCGGCGGGGCACGGCCGGGCGGCTCCGGCGGGGAAGGCCTCGCAGCCGGCCGGGCCGCCGGGACCAGCGCGGTGAAGCCGGCGGTTTCCGAAAGGGGAGAATCATATTTTGGGGACAAAAGTTCTTGTGTAGAAAATGCTAACACATTGAATCTCACGAGTTCTTCTTCTGTGCGAGGCCTGAATAGCACATGTATAGGAAAAACACCTCTCTCTTCTGGTAGATCTGGTTGCAGAAGCCATACCCCTCTTATGGGATATTCAGTTACATCCTCATCTGCAGTTTCTGCTCATACTGTTGCATCGGTTATTGTAGCTGTAGTAGAAGGAAGAGGCCTTGCCAGAGGTGAAGTAGGAATGGCCAGTATAGATTTAAAAAATCCTGAGATGATACTATCACAATTTGCAGACAATACAACTTATGCCAAGGTTATTACTAAACTCAAGATTTTAACACCACTAGAAATAATAATGTCAAACACTGCTTGTGATGCAGGGAATACAACAAAATTGTTCAGTCTGATAACAGAGCATTTCAAGAATGTGACTTTTACAACTGTCCAGAGAAAATACTTCAATGAAACAAAGGGTTTGGAGTACATAGAACAATTGTGTGCATCTGAATTTAGCACCATTTTCATGGAAGTCCAATCAAAGTATTACTGTCTTGCAGCTGCTGCAGCTTTGCTAAAATATGTTGAATTTATTCAAAACGCCGTTTATGCTCCTAAATCACTCAAGGTGCGTTTCCAGGGGAGTGAGAAAACAGCTATGATAGATTCATCATCAGCACAAAATCTTGAACTAGTGATTAATAACAGAGATTCTCGGAATGGTCACACACTTCTTGGTGTTCTAAATTACACTAAAACTCCCGGTGGAAGTCGAAGACTTAGATCCAATATCCTGGAACCTCTAGTTGATGCTGAAACAATTAACACAAGACTGGACTGTGTTCAGGAATTACTCCAGGATGAGGAGCTCTTTTTTGGTCTTCAAGCAGTTATCTCAAAATTCCTGGATACAGAACAACTACTTTCAGTTTTGGTACAGATTCCAAAGCAGGATACAGTTAAAACTGCTGAATCAAAAATAACTAATTTAATCTACCTGAAGCATACCTTAGAACTTGTGGAGCCTCTGAAAGCTGCTTTAAGAAGCTGTAACACACAGCTGCTAAAGGCTTATTACAATTCTCTTGAAGATACAAGATTTGGAATTATACTTGAAAAGATTACAAGTGTAATTAATGATGATACAAGATACACAAAAGGATGTCTGAGTATGAGGACCCAGAAGTGCTACGCTGTTAAGCCTAACATCAATGAATTCCTTGACATAGCTCGTAGAACATACACAGAAATTGTTGATGACATAGCAGGTATGATAACACAACTTGCAGAAAAGTACAGCCTGCCAATGAAAACAAGTTTCAGCTCTGCTCGTGGATTTTTTATCCAGATGAATGCTGATTGTTCAACATTACCTAATGGCCAGCTTCCTTCAGAATTTACAAAGATCACGAAAATGAAAAACACATATAGCTTCACTTCAGCAGATTTAATAAAAATGAATGAAAGATGTCAGGAGTCCCTGAGAGAAATATATCACATGACCTACTTAATAGTGTGTAAACTACTGAATGAGATCTATGAACACATTCATTGCCTATACAAGCTGTCTGACATTGTGTCTATGCTGGATATGCTGCTTTCATTTGCCCACGCCTGCACTCTTTCCGATTATGTTCGTCCAGAATTTACCGATACTTTAGCAATCAAGCAGGGATGGCATCCCATTCTTGAAAAGATAGCTATGGAAAAACCTGTGTCTAACAACACGTACCTGACAGAGGGCAACAATTTTGTCATTATTACAGGACCAAATATGAGTGGAAAATCAACATACCTGAAACAGATTGCTCTCTGTCAAATTATGGCACAGATTGGTTCTTATGTCCCAGCAGAGTATTGTTCTTTTCGAATCGCAGAGCAGATTTTTACCAGAATAGGTATGGATGATGATATTGAAACAAATGCATCAACATTCATGAAGGAAATGAAAGAGATAACGTACATCATACAAAATGCTAATGATAAATCACTCATCATTATTGATGAACTTGGCAGAGGTACCAGTGCCGAAGAAGGTATTGGCATTTGTTATGCTGCCTGTGAATATCTGTTGAACTTAAAGGCATTTACACTGTTTGCTACACATTTCCTGGAACTATGTCATATAGACGCTTTATATCCCAATGTGGAAAACTACCATTTTGAAGTGCAACATGTGAGAAGCAGTGCTGGAAATAAGGAGAAAATTGCTTACACTTACACACTTTCTAAAGGATACACAGAGGAAAAGAACTACGGACTAAAAGCTGCAGAAGTGTCCTCCCTACCATCATCCATAATTTTGGATGCAAAGGAAATCACAAATCACATTGCAAAACAAATTTTGCACAGGCAGAAGAGCACTCCTGAGATGATGAAACAGAGAGCTGCATACCAGTTAGCAATGAGATTGGTTCAGACTGCCAGAAATTCTCGACTGGACCCTGACAGTTTGCGTGTATATTTGAAAGCCCTGAAGAAAAAGTATGAAGCCAGTTGTCCCACACCCAGAAAAAATGATGAGCAACAGTAA

It would cause some trouble if I only need sequence from one of the nodes.
Would you fix this?

[chnyuch]

I just found out my input tree file has the same node label so maybe that's why.
So, there are no issues now.