Skip to content

Latest commit

 

History

History
executable file
·
19 lines (18 loc) · 1.22 KB

README.md

File metadata and controls

executable file
·
19 lines (18 loc) · 1.22 KB

Example Input Files

Input files of two tumor samples from a brain tumor patient. For each sample, there are two bed files for the highly amplified genomic regions: CNA_region_raw_*.bed and CNA_region_refined_*.bed.

Input File Descriptions

  • CNA_region_raw_D.bed: the highly amplified segments extracted from CONSERTING somatic copy number alteration (SCNA) output of the diagnosis sample.
  • CNA_region_raw_R.bed: the highly amplified segments extracted from CONSERTING somatic copy number alteration (SCNA) output of the relapse sample.
  • CNA_region_refined_D.bed: refined segment boundaries based on manual inspection of each segment’s coverage on IGV and the Blat output of the diagnosis sample.
  • CNA_region_refined_R.bed: refined segment boundaries based on manual inspection of each segment’s coverage on IGV and the Blat output of the relapse sample.
  • mini_SJHGG019_E.bam: mini bam for the diagnosis sample.
  • mini_SJHGG019_E.bam.bai: index file for the mini bam of the diagnosis sample.
  • mini_SJHGG019_S.bam: mini bam for the relapse sample.
  • mini_SJHGG019_S.bam.bai: index file for the mini bam of the relapse sample.