periodic_tests.yml

name: Periodic Tests

on:
  schedule:
    # every day at 1:30 AM UTC
    - cron:  "30 1 * * *"
  workflow_dispatch:

concurrency:
  group: ${{ github.workflow }}
  cancel-in-progress: true

jobs:
  # check-manifest:
  #   runs-on: ubuntu-22.04

  #   steps:
  #     - uses: actions/checkout@v4

  #     - uses: actions/setup-python@v5
  #       with:
  #         python-version: "3.10"

  #     - uses: pre-commit/action@v3.0.1
  #       with:
  #         extra_args: check-manifest --hook-stage manual

  # pre-commit:
  #   runs-on: ubuntu-22.04

  #   steps:
  #     - uses: actions/checkout@v4

  #     - uses: actions/setup-python@v5
  #       with:
  #         python-version: "3.10"

  #     - uses: pre-commit/action@v3.0.1
  #       with:
  #         extra_args: --all-files

  run-notebook-examples:
    runs-on: ubuntu-22.04

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: "3.10"

      - name: Install dependencies
        uses: nick-fields/retry@v3
        with:
          timeout_minutes: 30
          max_attempts: 3
          command: python -m pip install .[all_extras,binder,dev]

      - name: Run example notebooks
        run: build_tools/run_examples.sh
        shell: bash

  pytest:
    runs-on: ${{ matrix.os }}

    strategy:
      fail-fast: false
      matrix:
        os: [ ubuntu-22.04, macOS-12, windows-2022 ]
        python-version: [ "3.8", "3.9", "3.10", "3.11" ]

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Install aeon-neuro and dependencies
        uses: nick-fields/retry@v3
        with:
          timeout_minutes: 30
          max_attempts: 3
          command: python -m pip install .[all_extras,dev]

      - name: Show dependencies
        run: python -m pip list

      - name: Run tests
        run: python -m pytest

  codecov:
    runs-on: ubuntu-22.04

    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: "3.10"

      - name: Disable Numba JIT
        run: echo "NUMBA_DISABLE_JIT=1" >> $GITHUB_ENV

      - name: Install aeon-neuro and dependencies
        uses: nick-fields/retry@v3
        with:
          timeout_minutes: 30
          max_attempts: 3
          command: python -m pip install .[all_extras,dev]

      - name: Show dependencies
        run: python -m pip list

      - name: Run tests
        run: python -m pytest --cov=aeon_neuro --cov-report=xml

      - uses: codecov/codecov-action@v4
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}