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optional = false
python-versions = ">=3.8"

[[package]]
name = "packaging"
version = "23.0"
description = "Core utilities for Python packages"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "pandas"
version = "1.3.5"
description = "Powerful data structures for data analysis, time series, and statistics"
category = "main"
optional = false
python-versions = ">=3.7.1"

[package.dependencies]
numpy = [
    {version = ">=1.17.3", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""},
    {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""},
    {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""},
]
python-dateutil = ">=2.7.3"
pytz = ">=2017.3"

[package.extras]
test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"]

[[package]]
name = "pastel"
version = "0.2.1"
description = "Bring colors to your terminal."
category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "pathspec"
version = "0.10.3"
description = "Utility library for gitignore style pattern matching of file paths."
category = "dev"
optional = false
python-versions = ">=3.7"

[[package]]
name = "Pillow"
version = "9.4.0"
description = "Python Imaging Library (Fork)"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"]
tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"]

[[package]]
name = "pkgutil_resolve_name"
version = "1.3.10"
description = "Resolve a name to an object."
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "plac"
version = "1.3.5"
description = "The smartest command line arguments parser in the world"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "platformdirs"
version = "2.6.2"
description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.5)"]
test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]

[[package]]
name = "pluggy"
version = "1.0.0"
description = "plugin and hook calling mechanisms for python"
category = "main"
optional = false
python-versions = ">=3.6"

[package.extras]
dev = ["pre-commit", "tox"]
testing = ["pytest", "pytest-benchmark"]

[[package]]
name = "poethepoet"
version = "0.10.0"
description = "A task runner that works well with poetry."
category = "dev"
optional = false
python-versions = ">=3.6,<4.0"

[package.dependencies]
pastel = ">=0.2.0,<0.3.0"
tomlkit = ">=0.6.0,<1.0.0"

[[package]]
name = "pre-commit"
version = "2.21.0"
description = "A framework for managing and maintaining multi-language pre-commit hooks."
category = "dev"
optional = false
python-versions = ">=3.7"

[package.dependencies]
cfgv = ">=2.0.0"
identify = ">=1.0.0"
nodeenv = ">=0.11.1"
pyyaml = ">=5.1"
virtualenv = ">=20.10.0"

[[package]]
name = "psutil"
version = "5.9.4"
description = "Cross-platform lib for process and system monitoring in Python."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[package.extras]
test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]

[[package]]
name = "PuLP"
version = "2.7.0"
description = "PuLP is an LP modeler written in python. PuLP can generate MPS or LP files and call GLPK, COIN CLP/CBC, CPLEX, and GUROBI to solve linear problems."
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "puremagic"
version = "1.14"
description = "Pure python implementation of magic file detection"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "pybids"
version = "0.15.5"
description = "bids: interface with datasets conforming to BIDS"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
bids-validator = "*"
click = ">=8.0"
formulaic = ">=0.2.4,<0.4"
nibabel = ">=2.1"
num2words = "*"
numpy = "*"
pandas = ">=0.23"
scipy = "*"
sqlalchemy = "<1.4.0.dev0"

[package.extras]
ci_tests = ["bsmschema", "codecov", "graphviz", "pytest (>=3.3)", "pytest-cov", "pytest-xdist"]
dev = ["bsmschema", "graphviz", "jupytext", "myst-nb", "numpydoc", "pytest (>=3.3)", "sphinx (>=2.2,!=5.1.0)", "sphinx-rtd-theme"]
doc = ["jupytext", "myst-nb", "numpydoc", "sphinx (>=2.2,!=5.1.0)", "sphinx-rtd-theme"]
docs = ["jupytext", "myst-nb", "numpydoc", "sphinx (>=2.2,!=5.1.0)", "sphinx-rtd-theme"]
plotting = ["graphviz"]
plottings = ["graphviz"]
test = ["bsmschema", "pytest (>=3.3)"]
tests = ["bsmschema", "pytest (>=3.3)"]

[[package]]
name = "pycodestyle"
version = "2.8.0"
description = "Python style guide checker"
category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

[[package]]
name = "pyflakes"
version = "2.4.0"
description = "passive checker of Python programs"
category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "pylint"
version = "2.15.10"
description = "python code static checker"
category = "dev"
optional = false
python-versions = ">=3.7.2"

[package.dependencies]
astroid = ">=2.12.13,<=2.14.0-dev0"
colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
dill = {version = ">=0.2", markers = "python_version < \"3.11\""}
isort = ">=4.2.5,<6"
mccabe = ">=0.6,<0.8"
platformdirs = ">=2.2.0"
tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
tomlkit = ">=0.10.1"
typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""}

[package.extras]
spelling = ["pyenchant (>=3.2,<4.0)"]
testutils = ["gitpython (>3)"]

[[package]]
name = "pyparsing"
version = "3.0.9"
description = "pyparsing module - Classes and methods to define and execute parsing grammars"
category = "main"
optional = false
python-versions = ">=3.6.8"

[package.extras]
diagrams = ["jinja2", "railroad-diagrams"]

[[package]]
name = "pyrsistent"
version = "0.19.3"
description = "Persistent/Functional/Immutable data structures"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "pytest"
version = "7.2.0"
description = "pytest: simple powerful testing with Python"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
attrs = ">=19.2.0"
colorama = {version = "*", markers = "sys_platform == \"win32\""}
exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
iniconfig = "*"
packaging = "*"
pluggy = ">=0.12,<2.0"
tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}

[package.extras]
testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]

[[package]]
name = "pytest-console-scripts"
version = "1.3.1"
description = "Pytest plugin for testing console scripts"
category = "dev"
optional = false
python-versions = ">=3.6"

[package.dependencies]
pytest = ">=4.0.0"

[[package]]
name = "python-dateutil"
version = "2.8.2"
description = "Extensions to the standard Python datetime module"
category = "main"
optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"

[package.dependencies]
six = ">=1.5"

[[package]]
name = "python-slugify"
version = "7.0.0"
description = "A Python slugify application that also handles Unicode"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
text-unidecode = ">=1.3"

[package.extras]
unidecode = ["Unidecode (>=1.1.1)"]

[[package]]
name = "pytz"
version = "2022.7"
description = "World timezone definitions, modern and historical"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "PyWavelets"
version = "1.4.1"
description = "PyWavelets, wavelet transform module"
category = "main"
optional = false
python-versions = ">=3.8"

[package.dependencies]
numpy = ">=1.17.3"

[[package]]
name = "pywin32"
version = "305"
description = "Python for Window Extensions"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "PyYAML"
version = "6.0"
description = "YAML parser and emitter for Python"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "requests"
version = "2.28.2"
description = "Python HTTP for Humans."
category = "main"
optional = false
python-versions = ">=3.7, <4"

[package.dependencies]
certifi = ">=2017.4.17"
charset-normalizer = ">=2,<4"
idna = ">=2.5,<4"
urllib3 = ">=1.21.1,<1.27"

[package.extras]
socks = ["PySocks (>=1.5.6,!=1.5.7)"]
use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]

[[package]]
name = "reretry"
version = "0.11.8"
description = "An easy to use, but functional decorator for retrying on exceptions."
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "scikit-image"
version = "0.18.3"
description = "Image processing in Python"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
imageio = ">=2.3.0"
matplotlib = ">=2.0.0,<3.0.0 || >3.0.0"
networkx = ">=2.0"
numpy = ">=1.16.5"
pillow = ">=4.3.0,<7.1.0 || >7.1.0,<7.1.1 || >7.1.1"
PyWavelets = ">=1.1.1"
scipy = ">=1.0.1"
tifffile = ">=2019.7.26"

[package.extras]
data = ["pooch (>=1.3.0)"]
docs = ["cloudpickle (>=0.2.1)", "dask[array] (>=0.15.0,!=2.17.0)", "ipywidgets", "matplotlib (>=3.0.1)", "myst-parser", "numpydoc (>=1.0)", "pandas (>=0.23.0)", "plotly (>=4.10.0)", "pooch (>=1.3.0)", "pytest-runner", "scikit-learn", "seaborn (>=0.7.1)", "sphinx (>=1.8,<=2.4.4)", "sphinx-copybutton", "sphinx-gallery (>=0.7.0,!=0.8.0)", "tifffile (>=2020.5.30)"]
optional = ["SimpleITK", "astropy (>=3.1.2)", "cloudpickle (>=0.2.1)", "dask[array] (>=1.0.0,!=2.17.0)", "pooch (>=1.3.0)", "pyamg", "qtpy"]
test = ["codecov", "flake8", "pooch (>=1.3.0)", "pytest (>=5.2.0)", "pytest-cov (>=2.7.0)", "pytest-faulthandler", "pytest-localserver"]

[[package]]
name = "scipy"
version = "1.10.0"
description = "Fundamental algorithms for scientific computing in Python"
category = "main"
optional = false
python-versions = "<3.12,>=3.8"

[package.dependencies]
numpy = ">=1.19.5,<1.27.0"

[package.extras]
dev = ["click", "doit (>=0.36.0)", "flake8", "mypy", "pycodestyle", "pydevtool", "rich-click", "typing_extensions"]
doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"]
test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]

[[package]]
name = "setuptools"
version = "65.7.0"
description = "Easily download, build, install, upgrade, and uninstall Python packages"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]

[[package]]
name = "setuptools-scm"
version = "7.1.0"
description = "the blessed package to manage your versions by scm tags"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
packaging = ">=20.0"
setuptools = "*"
tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
typing-extensions = "*"

[package.extras]
test = ["pytest (>=6.2)", "virtualenv (>20)"]
toml = ["setuptools (>=42)"]

[[package]]
name = "simplejson"
version = "3.18.1"
description = "Simple, fast, extensible JSON encoder/decoder for Python"
category = "main"
optional = false
python-versions = ">=2.5, !=3.0.*, !=3.1.*, !=3.2.*"

[[package]]
name = "six"
version = "1.16.0"
description = "Python 2 and 3 compatibility utilities"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"

[[package]]
name = "smart-open"
version = "6.3.0"
description = "Utils for streaming large files (S3, HDFS, GCS, Azure Blob Storage, gzip, bz2...)"
category = "main"
optional = false
python-versions = ">=3.6,<4.0"

[package.extras]
all = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "paramiko", "requests"]
azure = ["azure-common", "azure-core", "azure-storage-blob"]
gcs = ["google-cloud-storage (>=2.6.0)"]
http = ["requests"]
s3 = ["boto3"]
ssh = ["paramiko"]
test = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "moto[server]", "paramiko", "pytest", "pytest-rerunfailures", "requests", "responses"]
webhdfs = ["requests"]

[[package]]
name = "smmap"
version = "5.0.0"
description = "A pure Python implementation of a sliding window memory map manager"
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "snakebids"
version = "0.6.2"
description = "BIDS integration into snakemake workflows"
category = "main"
optional = false
python-versions = ">=3.7,<3.11"

[package.dependencies]
attrs = ">=21.2.0,<22.0.0"
boutiques = ">=0.5.25,<0.6.0"
cached-property = ">=1.5.2,<2.0.0"
colorama = ">=0.4.4,<0.5.0"
cookiecutter = ">=2.1.1,<3.0.0"
more-itertools = ">=8.12.0,<9.0.0"
pybids = ">=0.15.0,<0.16.0"
PyYAML = ">=6,<7"
snakemake = ">=5.28.0"
typing-extensions = ">=3.10.0,<4.0.0"

[[package]]
name = "snakemake"
version = "7.19.1"
description = "Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files."
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
appdirs = "*"
configargparse = "*"
connection-pool = ">=0.0.3"
datrie = "*"
docutils = "*"
gitpython = "*"
jinja2 = ">=3.0,<4.0"
jsonschema = "*"
nbformat = "*"
psutil = "*"
pulp = ">=2.0"
pyyaml = "*"
requests = "*"
reretry = "*"
smart-open = ">=3.0"
stopit = "*"
tabulate = "*"
throttler = "*"
toposort = "*"
wrapt = "*"
yte = ">=1.0,<2.0"

[package.extras]
google-cloud = ["google-api-python-client", "google-cloud-storage", "google-crc32c", "oauth2client"]
messaging = ["slacker"]
pep = ["eido", "peppy"]
reports = ["jinja2", "pygments"]

[[package]]
name = "SQLAlchemy"
version = "1.3.24"
description = "Database Abstraction Library"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[package.extras]
mssql = ["pyodbc"]
mssql_pymssql = ["pymssql"]
mssql_pyodbc = ["pyodbc"]
mysql = ["mysqlclient"]
oracle = ["cx_oracle"]
postgresql = ["psycopg2"]
postgresql_pg8000 = ["pg8000 (<1.16.6)"]
postgresql_psycopg2binary = ["psycopg2-binary"]
postgresql_psycopg2cffi = ["psycopg2cffi"]
pymysql = ["pymysql", "pymysql (<1)"]

[[package]]
name = "sseclient"
version = "0.0.27"
description = "Python client library for reading Server Sent Event streams."
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
requests = ">=2.9"
six = "*"

[[package]]
name = "stopit"
version = "1.1.2"
description = "Timeout control decorator and context managers, raise any exception in another thread"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "svgutils"
version = "0.3.4"
description = "Python SVG editor"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
lxml = "*"

[[package]]
name = "tabulate"
version = "0.9.0"
description = "Pretty-print tabular data"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
widechars = ["wcwidth"]

[[package]]
name = "termcolor"
version = "2.2.0"
description = "ANSI color formatting for output in terminal"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
tests = ["pytest", "pytest-cov"]

[[package]]
name = "text-unidecode"
version = "1.3"
description = "The most basic Text::Unidecode port"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "throttler"
version = "1.2.2"
description = "Zero-dependency Python package for easy throttling with asyncio support"
category = "main"
optional = false
python-versions = "*"

[package.extras]
dev = ["aiohttp (>=3.8)", "codecov (>=2.1)", "flake8 (>=4.0)", "pytest (>=7.0)", "pytest-asyncio (>=0.16)", "pytest-cov (>=3.0)"]

[[package]]
name = "tifffile"
version = "2022.10.10"
description = "Read and write TIFF files"
category = "main"
optional = false
python-versions = ">=3.8"

[package.dependencies]
numpy = ">=1.19.2"

[package.extras]
all = ["fsspec", "imagecodecs (>=2022.2.22)", "lxml", "matplotlib (>=3.3)", "zarr"]

[[package]]
name = "tomli"
version = "2.0.1"
description = "A lil' TOML parser"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "tomlkit"
version = "0.11.6"
description = "Style preserving TOML library"
category = "dev"
optional = false
python-versions = ">=3.6"

[[package]]
name = "toposort"
version = "1.9"
description = "Implements a topological sort algorithm."
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "traitlets"
version = "5.8.1"
description = "Traitlets Python configuration system"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"]

[[package]]
name = "typing-extensions"
version = "3.10.0.2"
description = "Backported and Experimental Type Hints for Python 3.5+"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "urllib3"
version = "1.26.14"
description = "HTTP library with thread-safe connection pooling, file post, and more."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"

[package.extras]
brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"]
secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"]
socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]

[[package]]
name = "virtualenv"
version = "20.17.1"
description = "Virtual Python Environment builder"
category = "dev"
optional = false
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