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ChangeLog
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CHANGES
=======
0.0.2
-----
* Update setup.cfg
* Update README.md
* build(deps): bump pandas-stubs from 2.1.4.231227 to 2.2.0.240218
* build(deps): bump numpy from 1.26.3 to 1.26.4
* Update README.md
* clean up
* update README
* build(deps): bump scipy from 1.11.4 to 1.12.0
* build(deps): bump pandas from 2.1.4 to 2.2.0
* build(deps): bump pandas-stubs from 2.1.4.231218 to 2.1.4.231227
* build(deps): bump numpy from 1.26.2 to 1.26.3
* fix: nan defaults
* Update README.md
* test: fix rel crea
* test: fix abs crea
* test: fix val data
* test: fix test rel creat
* update default timeframe forabs creat probe
* feat: change default probe
* build(deps): bump pandas-stubs from 2.1.1.230928 to 2.1.4.231218
* build(deps): bump pandas from 2.1.3 to 2.1.4
* Remove unneccessary columns
* build(deps): bump actions/setup-python from 4 to 5
* fix typing
* fix minor issue
* test: fix analyser test
* test: fix test with old threshold
* feat: change threshold
* test: fix test for analyser pipeline
* feat: add test for complete analyser
* doc: add docstrings for new baseline methods
* feat: unify df augmentation method
* feat: tests for new baseline methods
* feat: implement new baseline methods with tests
* chore: add citation.cff file
* Update README.md
* Update README.md
* Update README.md
* Update README.md
* merge
* fix test
* add calc method for creat
* fix constant method
* feature: implement calculated baseline method
* fix: remove test
* feature: implement constant creatinine baseline
* build(deps): bump scipy from 1.11.3 to 1.11.4
* fix pandas warnings
* minor fixes after feedback
* fix nan values
* update github actions
* update github actions
* update github actions
* update github actions
* add mypy to github actions
* fx typing of utils
* types: fix some type errors by hardening programn flow
* types: change variable name to fix pylance warning
* types: fix types in utils.py
* types: fix types in approx\_gte
* add logging for analyser
* add waringn when probe is skipped
* add test case for negative input
* handle negative data
* fix type hints
* add test for urine output strict probe
* build(deps): bump pandas from 2.1.2 to 2.1.3
* build(deps): bump numpy from 1.26.1 to 1.26.2
* minor fixes
* add urine output preprocessor test
* add creatinie preprocessor test
* add time preprocessor test
* add demographics preprocessor test
* add rrt preprocessor test
* add test structure
* clean up tests
* minor fix
* chore: adjust metadata version
* chore: Remove author email from setup.cfg
* chore: Add metadata version and package version, update author list
* Added coverage badge
* Added coverage calculation
* build(deps): bump pbr from 5.11.1 to 6.0.0
* chore: add paper to gitignore
* chore: add results folder to keep locally
* doc: add docstrings for CLI
* add typer as dep
* build(deps): bump pandas from 2.1.1 to 2.1.2
* fix: fill empty row
* chore: remove unnecessary files
* fixes
* fix urine output test
* fix: fix error in uo stage
* fix urine output tests
* fix crrt test
* chore: Update lint\_and\_test.yml
* fix data
* fix abs creat test
* fix: correct validation data with nans for creat
* update creat tests
* update creat tests
* fix test
* doc: add some documentation to decorators
* feat: fix crrt probe nan bug
* test: add validation data
* test: add tests on validation data
* chore: first cleanup of test folder
* rename crt to rrt
* build(deps): bump numpy from 1.26.0 to 1.26.1
* fix for floating point errors
* clean up
* add time index creator
* fix minor issues
* fix minor issues
* build(deps): bump scipy from 1.11.2 to 1.11.3
v0.1.0
------
* fix bug
* build(deps): bump numpy from 1.25.2 to 1.26.0
* build(deps): bump pandas from 2.0.3 to 2.1.1
* fix abs value for stage 3 from 4mg/dl increase over baseline to 4mg/dl
* build(deps): bump actions/checkout from 3 to 4
* update setup file
* initiation for human testing
* build(deps): bump scipy from 1.11.1 to 1.11.2
* remove prints
* generation of experiment data
* build(deps): bump numpy from 1.25.1 to 1.25.2
* new testing notebook
* add unittest for creatinine baseline
* clean up
* fix unittests
* doc: add module docstring
* fix: Default creatinine baseline method is fixed 7d
* doc: add documentation for FIXED method
* test generation
* feat: add fixed creatinine baseline method
* fix: change baseline creatinie to correct method
* fix: add resilience when data is missing
* build(deps): bump numpy from 1.25.0 to 1.25.1
* feature: add enum for urineoutputprobe
* feature: mean method for urine output
* feature: crrt probe working with tests
* build(deps): bump scipy from 1.10.1 to 1.11.1
* build(deps): bump pandas from 2.0.2 to 2.0.3
* build(deps): bump numpy from 1.24.3 to 1.25.0
* feature: adjust for new dataframes
* fix: fix settingwithcopywarning in pandas
* add typing imports
* fix: remove additional stay\_id column
* chore: fix spelling in tests
* clean up and fixes
* add rel creatinine test
* add abs creatinine test
* set python version to 3.11 for ci
* fix imports
* merge
* clean up
* add test for urineoutput probe
* fix imports for mimic test
* fix imports
* feature: add crrt to analyser class
* feature: crrt probe
* feature: time series preprocessor for crrt
* fix: add environment to gitignore
* fix: resolve comments
* doc: use optional type hints
* chore: fix some imports and configs
* doc: add documentation for preprocessors
* chore: fix style
* chore: add data folder to .gitignore
* doc: add type annotation
* update mimic test
* chore: format style test\_kdigo
* doc: add type annotations in kdigo
* doc: add documentation for process stays
* chore: remove duplicate documentation
* add test script for mimic data
* add method for processing multiple stays
* chore: fix spelling
* chore: remove unnecessary import
* doc: add documentation to analyser
* chore: fix spelling in Analyzer class
* chore: formatting
* doc: finish docstrings for probes
* fix: pull the calculation of baseline crea into abstract class
* chore: rename timeframe to baseline\_timeframe
* chore: rename creatininemethod to CreatinineBaselineMethod
* chore: fix spelling in AbstracCreatinineProbe
* doc: add documentation for urineoutput probe
* chore: fix typo in Resampler Class
* doc: add type annotation and docstrings to probe
* docs: add type annotations to preprocessor
* docs: add docstrings and type annotations to utils.py
* doc: add docstrings to utils.py
* clean up
* update to new decorator
* add preprocessor for demograhics dataset
* add preprocessor for creatinine dataset
* add preprocessor for urineoutput dataset
* fix readme
* add DEMOGRAPHICS dataset to types
* refactor propes
* add abs serum creatinie probe
* correct urineoutput in docs
* add tests to readme
* refactor probes
* create analysis services
* add probes for urine output and relative serum creatinine
* add proprocessor for data
* add util methods
* Update .gitignore
* Remove pyaki from .gitignore
* Updated testing
* Updated workflows
* Initial version of pyAKI. [WIP]
* Create dependabot.yml
* init tests
* update requirements
* add vscode stuff
* add vscode stuff
* init requirements file
* fix readme
* init kdigo file
* add env
* update readme file
* Initial commit