TypeError: parameter_change_mutation()

[irivo]

After updating GOLEM to version 0.3.1, FEDOT gives the following error:

Traceback (most recent call last):
  File "...", line 75, in <module>
    main()
  File "..", line 72, in main
    my_fedot()
  File "..", line 63, in my_fedot
    best_pipeline = model.fit(features=X_df, target=y_df)
  File "C:\..\lib\site-packages\fedot\api\main.py", line 206, in fit
    self.api_composer.obtain_model(**self.params.api_params)
  File "C:\..\lib\site-packages\fedot\api\api_utils\api_composer.py", line 82, in obtain_model
    return self.compose_fedot_model(api_params_dict, composer_params_dict, tuner_params_dict)
  File "C:\..\lib\site-packages\fedot\api\api_utils\api_composer.py", line 261, in compose_fedot_model
    best_pipeline, best_pipeline_candidates, gp_composer = self.compose_pipeline(task, train_data,
  File "C:\..\lib\site-packages\fedot\api\api_utils\api_composer.py", line 315, in compose_pipeline
    best_pipelines = gp_composer.compose_pipeline(data=train_data)
  File "C:\..\lib\site-packages\fedot\core\composer\gp_composer\gp_composer.py", line 65, in compose_pipeline
    opt_result = self.optimizer.optimise(objective_function)
  File "C:\..\lib\site-packages\golem\core\optimisers\populational_optimizer.py", line 88, in optimise
    self._initial_population(evaluator)
  File "C:\..\lib\site-packages\golem\core\optimisers\genetic\gp_optimizer.py", line 71, in _initial_population
    self.initial_individuals = self._extend_population(self.initial_individuals)
  File "C:\..\lib\site-packages\golem\core\optimisers\genetic\gp_optimizer.py", line 85, in _extend_population
    new_ind = self.mutation(choice(self.initial_individuals))
  File "C:\..\lib\site-packages\golem\core\optimisers\genetic\operators\mutation.py", line 38, in __call__
    return self._mutation(population)
  File "C:\..\lib\site-packages\golem\core\optimisers\genetic\operators\mutation.py", line 48, in _mutation
    new_graph, mutation_names = self._apply_mutations(new_graph, num_mut)
  File "C:\..\lib\site-packages\golem\core\optimisers\genetic\operators\mutation.py", line 74, in _apply_mutations
    new_graph, applied = self._adapt_and_apply_mutation(new_graph, mutation_type)
  File "C:\..\lib\site-packages\golem\core\optimisers\genetic\operators\mutation.py", line 87, in _adapt_and_apply_mutation
    new_graph = mutation_func(new_graph, requirements=self.requirements,
  File "C:\..\lib\site-packages\golem\core\adapter\adapter.py", line 173, in adapted_fun
    result = fun(*adapted_args, **adapted_kwargs)
TypeError: parameter_change_mutation() missing 2 required positional arguments: 'params' and 'opt_params'

Even such an example:

    model = Fedot(problem='classification') 
#------------------------------------------------------------------------------    
    best_pipeline = model.fit(features=X_df, target=y_df)

[gkirgizov]

Проблема на стороне FEDOT-а -- нужно поменять сигнатуру мутации. Я пофикшу.

[gkirgizov]

Хотя нет, эт давно пофикшено, еще в #1057

Федот точно актуальный?
@irivo

[irivo]

Запускаю в терминале win 10. Выполнил установку через pip в новую чистую виртуальную среду. Вот результат:

...\lib\site-packages\statsmodels\genmod\families\links.py:13: FutureWarning: The log link alias is deprecated. Use Log instead. The log link alias will be removed after the 0.15.0 release.
warnings.warn(
...\lib\site-packages\statsmodels\genmod\families\links.py:13: FutureWarning: The identity link alias is deprecated. Use Identity instead. The identity link alias will be removed after the 0.15.0 release.
warnings.warn(
...\lib\site-packages\statsmodels\genmod\families\links.py:13: FutureWarning: The inverse_power link alias is deprecated. Use InversePower instead. The inverse_power link alias will be removed after the 0.15.0 release.
warnings.warn(
...\lib\site-packages\statsmodels\genmod\families\links.py:13: FutureWarning: The inverse_squared link alias is deprecated. Use InverseSquared instead. The inverse_squared link alias will be removed after the 0.15.0 release.
warnings.warn(
2023-05-26 17:01:06,768 - AssumptionsHandler - Memory consumption for fitting of the initial pipeline in main session: current 46.9 MiB, max: 157.1 MiB
2023-05-26 17:01:06,784 - ApiComposer - Initial pipeline was fitted in 11.1 sec.
2023-05-26 17:01:06,784 - AssumptionsHandler - Preset was changed to best_quality due to fit time estimation for initial model.
2023-05-26 17:01:06,799 - ApiComposer - AutoML configured. Parameters tuning: True. Time limit: 5.0 min. Set of candidate models: ['rf', 'qda', 'dt', 'lgbm', 'pca', 'scaling', 'bernb', 'normalization', 'knn', 'mlp', 'fast_ica', 'resample', 'logit', 'isolation_forest_class', 'poly_features', 'rf', 'qda', 'dt', 'lgbm', 'pca', 'scaling', 'bernb', 'normalization', 'knn', 'mlp', 'fast_ica', 'resample', 'logit', 'isolation_forest_class', 'poly_features'].
2023-05-26 17:01:06,799 - ApiComposer - Pipeline composition started.
Generations: 0%| | 1/10000 [00:00<?, ?gen/s]...\lib\site-packages\statsmodels\genmod\families\links.py:13: FutureWarning: The log link alias is deprecated. Use Log instead. The log link alias will be removed after the 0.15.0 release.
warnings.warn(
...\lib\site-packages\statsmodels\genmod\families\links.py:13: FutureWarning: The identity link alias is deprecated. Use Identity instead. The identity link alias will be removed after the 0.15.0 release.
warnings.warn(
...\lib\site-packages\statsmodels\genmod\families\links.py:13: FutureWarning: The inverse_power link alias is deprecated. Use InversePower instead. The inverse_power link alias will be removed after the 0.15.0 release.
warnings.warn(
...\lib\site-packages\statsmodels\genmod\families\links.py:13: FutureWarning: The inverse_squared link alias is deprecated. Use InverseSquared instead. The inverse_squared link alias will be removed after the 0.15.0 release.
warnings.warn(
2023-05-26 17:01:33,369 - MultiprocessingDispatcher - 1 individuals out of 1 in previous population were evaluated successfully.
Generations: 0%| | 1/10000 [00:26<?, ?gen/s]
Traceback (most recent call last):
File "...", line 73, in
main()
File "...", line 70, in main
my_fedot()
File "...", line 61, in my_fedot
best_pipeline = model.fit(features=X_df, target=y_df)
File "...\lib\site-packages\fedot\api\main.py", line 206, in fit
self.api_composer.obtain_model(**self.params.api_params)
File "...\lib\site-packages\fedot\api\api_utils\api_composer.py", line 82, in obtain_model
return self.compose_fedot_model(api_params_dict, composer_params_dict, tuner_params_dict)
File "...\lib\site-packages\fedot\api\api_utils\api_composer.py", line 261, in compose_fedot_model
best_pipeline, best_pipeline_candidates, gp_composer = self.compose_pipeline(task, train_data,
File "...\lib\site-packages\fedot\api\api_utils\api_composer.py", line 315, in compose_pipeline
best_pipelines = gp_composer.compose_pipeline(data=train_data)
File "...\lib\site-packages\fedot\core\composer\gp_composer\gp_composer.py", line 65, in compose_pipeline
opt_result = self.optimizer.optimise(objective_function)
File "...\lib\site-packages\golem\core\optimisers\populational_optimizer.py", line 88, in optimise
self._initial_population(evaluator)
File "...\lib\site-packages\golem\core\optimisers\genetic\gp_optimizer.py", line 71, in _initial_population
self.initial_individuals = self._extend_population(self.initial_individuals)
File "...\lib\site-packages\golem\core\optimisers\genetic\gp_optimizer.py", line 85, in _extend_population
new_ind = self.mutation(choice(self.initial_individuals))
File "...\lib\site-packages\golem\core\optimisers\genetic\operators\mutation.py", line 38, in call
return self._mutation(population)
File "...\lib\site-packages\golem\core\optimisers\genetic\operators\mutation.py", line 48, in _mutation
new_graph, mutation_names = self._apply_mutations(new_graph, num_mut)
File "...\lib\site-packages\golem\core\optimisers\genetic\operators\mutation.py", line 74, in _apply_mutations
new_graph, applied = self._adapt_and_apply_mutation(new_graph, mutation_type)
File "...\lib\site-packages\golem\core\optimisers\genetic\operators\mutation.py", line 87, in _adapt_and_apply_mutation
new_graph = mutation_func(new_graph, requirements=self.requirements,
File "...0\lib\site-packages\golem\core\adapter\adapter.py", line 173, in adapted_fun
result = fun(*adapted_args, **adapted_kwargs)
TypeError: parameter_change_mutation() missing 2 required positional arguments: 'params' and 'opt_params'

packages in environment at FEDOT070:

Name Version Build Channel

alabaster 0.7.12 pyhd3eb1b0_0
anytree 2.8.0 pypi_0 pypi
arrow 1.2.3 py39haa95532_1
astroid 2.14.2 py39haa95532_0
asttokens 2.0.5 pyhd3eb1b0_0
atomicwrites 1.4.0 py_0
attrs 22.1.0 py39haa95532_0
autopep8 1.6.0 pyhd3eb1b0_1
babel 2.11.0 py39haa95532_0
backcall 0.2.0 pyhd3eb1b0_0
bcrypt 3.2.0 py39h2bbff1b_1
beautifulsoup4 4.12.2 py39haa95532_0
binaryornot 0.4.4 pyhd3eb1b0_1
black 23.3.0 py39haa95532_0
bleach 4.1.0 pyhd3eb1b0_0
brotlipy 0.7.0 py39h2bbff1b_1003
ca-certificates 2023.01.10 haa95532_0
catboost 1.2 pypi_0 pypi
certifi 2023.5.7 py39haa95532_0
cffi 1.15.1 py39h2bbff1b_3
chardet 4.0.0 py39haa95532_1003
charset-normalizer 2.0.4 pyhd3eb1b0_0
click 8.0.4 py39haa95532_0
cloudpickle 2.2.1 py39haa95532_0
colorama 0.4.6 py39haa95532_0
comm 0.1.2 py39haa95532_0
contourpy 1.0.7 pypi_0 pypi
cookiecutter 1.7.3 pyhd3eb1b0_0
cryptography 39.0.1 py39h21b164f_0
cycler 0.11.0 pypi_0 pypi
debugpy 1.5.1 py39hd77b12b_0
decorator 5.1.1 pyhd3eb1b0_0
defusedxml 0.7.1 pyhd3eb1b0_0
diff-match-patch 20200713 pyhd3eb1b0_0
dill 0.3.6 py39haa95532_0
docstring-to-markdown 0.11 py39haa95532_0
docutils 0.18.1 py39haa95532_3
entrypoints 0.4 py39haa95532_0
et-xmlfile 1.1.0 pypi_0 pypi
ete3 3.1.3 pypi_0 pypi
exceptiongroup 1.1.1 pypi_0 pypi
executing 0.8.3 pyhd3eb1b0_0
fedot 0.7.0 pypi_0 pypi
flake8 6.0.0 py39haa95532_0
fonttools 4.39.4 pypi_0 pypi
func-timeout 4.3.5 pypi_0 pypi
future 0.18.3 pypi_0 pypi
giflib 5.2.1 h8cc25b3_3
glib 2.69.1 h5dc1a3c_2
gst-plugins-base 1.18.5 h9e645db_0
gstreamer 1.18.5 hd78058f_0
hyperopt 0.2.7 pypi_0 pypi
icu 58.2 ha925a31_3
idna 3.4 py39haa95532_0
imagesize 1.4.1 py39haa95532_0
importlib-metadata 6.0.0 py39haa95532_0
importlib-resources 5.12.0 pypi_0 pypi
importlib_metadata 6.0.0 hd3eb1b0_0
inflection 0.5.1 py39haa95532_0
iniconfig 2.0.0 pypi_0 pypi
intervaltree 3.1.0 pyhd3eb1b0_0
ipykernel 6.19.2 py39hd4e2768_0
ipython 8.12.0 py39haa95532_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
isort 5.9.3 pyhd3eb1b0_0
jaraco.classes 3.2.1 pyhd3eb1b0_0
jedi 0.18.1 py39haa95532_1
jellyfish 0.9.0 py39h2bbff1b_0
jinja2 3.1.2 py39haa95532_0
jinja2-time 0.2.0 pyhd3eb1b0_3
joblib 1.2.0 pypi_0 pypi
jpeg 9e h2bbff1b_1
jsonpickle 3.0.1 pypi_0 pypi
jsonschema 4.17.3 py39haa95532_0
jupyter_client 8.1.0 py39haa95532_0
jupyter_core 5.3.0 py39haa95532_0
jupyterlab_pygments 0.1.2 py_0
keyring 23.13.1 py39haa95532_0
kiwisolver 1.4.4 pypi_0 pypi
krb5 1.19.4 h5b6d351_0
lazy-object-proxy 1.6.0 py39h2bbff1b_0
lerc 3.0 hd77b12b_0
libclang 14.0.6 default_hb5a9fac_1
libclang13 14.0.6 default_h8e68704_1
libdeflate 1.17 h2bbff1b_0
libffi 3.4.4 hd77b12b_0
libiconv 1.16 h2bbff1b_2
libogg 1.3.5 h2bbff1b_1
libpng 1.6.39 h8cc25b3_0
libsodium 1.0.18 h62dcd97_0
libspatialindex 1.9.3 h6c2663c_0
libtiff 4.5.0 h6c2663c_2
libvorbis 1.3.7 he774522_0
libwebp 1.2.4 hbc33d0d_1
libwebp-base 1.2.4 h2bbff1b_1
libxml2 2.10.3 h0ad7f3c_0
libxslt 1.1.37 h2bbff1b_0
lightgbm 3.3.5 pypi_0 pypi
lxml 4.9.2 py39h2bbff1b_0
lz4-c 1.9.4 h2bbff1b_0
markupsafe 2.1.1 py39h2bbff1b_0
matplotlib 3.7.1 pypi_0 pypi
matplotlib-inline 0.1.6 py39haa95532_0
mccabe 0.7.0 pyhd3eb1b0_0
mistune 0.8.4 py39h2bbff1b_1000
more-itertools 8.12.0 pyhd3eb1b0_0
multiprocess 0.70.14 pypi_0 pypi
mypy_extensions 0.4.3 py39haa95532_1
nbclient 0.5.13 py39haa95532_0
nbconvert 6.5.4 py39haa95532_0
nbformat 5.7.0 py39haa95532_0
nest-asyncio 1.5.6 py39haa95532_0
networkx 3.1 pypi_0 pypi
numpy 1.24.3 pypi_0 pypi
numpydoc 1.5.0 py39haa95532_0
openpyxl 3.1.2 pypi_0 pypi
openssl 1.1.1t h2bbff1b_0
packaging 23.0 py39haa95532_0
pandas 2.0.1 pypi_0 pypi
pandocfilters 1.5.0 pyhd3eb1b0_0
paramiko 2.8.1 pyhd3eb1b0_0
parso 0.8.3 pyhd3eb1b0_0
pathspec 0.10.3 py39haa95532_0
patsy 0.5.3 pypi_0 pypi
pcre 8.45 hd77b12b_0
pexpect 4.8.0 pyhd3eb1b0_3
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 9.5.0 pypi_0 pypi
pip 23.0.1 py39haa95532_0
platformdirs 2.5.2 py39haa95532_0
plotly 5.14.1 pypi_0 pypi
pluggy 1.0.0 py39haa95532_1
ply 3.11 py39haa95532_0
poyo 0.5.0 pyhd3eb1b0_0
prompt-toolkit 3.0.36 py39haa95532_0
psutil 5.9.5 pypi_0 pypi
ptyprocess 0.7.0 pyhd3eb1b0_2
pure_eval 0.2.2 pyhd3eb1b0_0
py4j 0.10.9.7 pypi_0 pypi
pyaml 23.5.9 pypi_0 pypi
pycodestyle 2.10.0 py39haa95532_0
pycparser 2.21 pyhd3eb1b0_0
pydocstyle 6.3.0 py39haa95532_0
pyflakes 3.0.1 py39haa95532_0
pygments 2.15.1 py39haa95532_1
pylint 2.16.2 py39haa95532_0
pylint-venv 2.3.0 py39haa95532_0
pyls-spyder 0.4.0 pyhd3eb1b0_0
pynacl 1.5.0 py39h8cc25b3_0
pyopenssl 23.0.0 py39haa95532_0
pyparsing 3.0.9 pypi_0 pypi
pyqt 5.15.7 py39hd77b12b_0
pyqt5-sip 12.11.0 py39hd77b12b_0
pyqtwebengine 5.15.7 py39hd77b12b_0
pyrsistent 0.18.0 py39h196d8e1_0
pysocks 1.7.1 py39haa95532_0
pytest 7.3.1 pypi_0 pypi
python 3.9.16 h6244533_2
python-dateutil 2.8.2 pyhd3eb1b0_0
python-fastjsonschema 2.16.2 py39haa95532_0
python-graphviz 0.20.1 pypi_0 pypi
python-lsp-black 1.2.1 py39haa95532_0
python-lsp-jsonrpc 1.0.0 pyhd3eb1b0_0
python-lsp-server 1.7.2 py39haa95532_0
python-slugify 5.0.2 pyhd3eb1b0_0
pytoolconfig 1.2.5 py39haa95532_1
pytz 2022.7 py39haa95532_0
pyvis 0.2.1 pypi_0 pypi
pywin32 305 py39h2bbff1b_0
pywin32-ctypes 0.2.0 py39haa95532_1000
pyyaml 6.0 py39h2bbff1b_1
pyzmq 25.0.2 py39hd77b12b_0
qdarkstyle 3.0.2 pyhd3eb1b0_0
qstylizer 0.2.2 py39haa95532_0
qt-main 5.15.2 he8e5bd7_8
qt-webengine 5.15.9 hb9a9bb5_5
qtawesome 1.2.2 py39haa95532_0
qtconsole 5.4.2 py39haa95532_0
qtpy 2.2.0 py39haa95532_0
qtwebkit 5.212 h2bbfb41_5
requests 2.29.0 py39haa95532_0
rope 1.7.0 py39haa95532_0
rtree 1.0.1 py39h2eaa2aa_0
salib 1.4.7 pypi_0 pypi
scikit-learn 1.2.2 pypi_0 pypi
scikit-optimize 0.9.0 pypi_0 pypi
scipy 1.10.1 pypi_0 pypi
seaborn 0.12.2 pypi_0 pypi
setuptools 66.0.0 py39haa95532_0
sip 6.6.2 py39hd77b12b_0
six 1.16.0 pyhd3eb1b0_1
snowballstemmer 2.2.0 pyhd3eb1b0_0
sortedcontainers 2.4.0 pyhd3eb1b0_0
soupsieve 2.4 py39haa95532_0
sphinx 5.0.2 py39haa95532_0
sphinxcontrib-applehelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-devhelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-htmlhelp 2.0.0 pyhd3eb1b0_0
sphinxcontrib-jsmath 1.0.1 pyhd3eb1b0_0
sphinxcontrib-qthelp 1.0.3 pyhd3eb1b0_0
sphinxcontrib-serializinghtml 1.1.5 pyhd3eb1b0_0
spyder 5.4.3 py39haa95532_1
spyder-kernels 2.4.3 py39haa95532_0
sqlite 3.41.2 h2bbff1b_0
stack_data 0.2.0 pyhd3eb1b0_0
statsmodels 0.14.0 pypi_0 pypi
tenacity 8.2.2 pypi_0 pypi
testfixtures 7.1.0 pypi_0 pypi
text-unidecode 1.3 pyhd3eb1b0_0
textdistance 4.2.1 pyhd3eb1b0_0
thegolem 0.3.1 pypi_0 pypi
threadpoolctl 3.1.0 pypi_0 pypi
three-merge 0.1.1 pyhd3eb1b0_0
tinycss2 1.2.1 py39haa95532_0
toml 0.10.2 pyhd3eb1b0_0
tomli 2.0.1 py39haa95532_0
tomlkit 0.11.1 py39haa95532_0
tornado 6.2 py39h2bbff1b_0
tqdm 4.65.0 pypi_0 pypi
traitlets 5.7.1 py39haa95532_0
typing 3.7.4.3 pypi_0 pypi
typing-extensions 4.5.0 py39haa95532_0
typing_extensions 4.5.0 py39haa95532_0
tzdata 2023.3 pypi_0 pypi
ujson 5.4.0 py39hd77b12b_0
unidecode 1.2.0 pyhd3eb1b0_0
urllib3 1.26.15 py39haa95532_0
vc 14.2 h21ff451_1
vs2015_runtime 14.27.29016 h5e58377_2
watchdog 2.1.6 py39haa95532_0
wcwidth 0.2.5 pyhd3eb1b0_0
webencodings 0.5.1 py39haa95532_1
whatthepatch 1.0.2 py39haa95532_0
wheel 0.38.4 py39haa95532_0
win_inet_pton 1.1.0 py39haa95532_0
wrapt 1.14.1 py39h2bbff1b_0
xgboost 1.7.5 pypi_0 pypi
xz 5.4.2 h8cc25b3_0
yaml 0.2.5 he774522_0
yapf 0.31.0 pyhd3eb1b0_0
zeromq 4.3.4 hd77b12b_0
zipp 3.11.0 py39haa95532_0
zlib 1.2.13 h8cc25b3_0
zss 1.2.0 pypi_0 pypi
zstd 1.5.5 hd43e919_0

[gkirgizov]

Ах, понял, кажется. Версия федота в pip устарела. Выпущу новый мини-релиз 071.
Думал, проблема на мастере.
Очень хорошо, что заметил.
В общем, интеграционки в CI должны падать от этого.

[irivo]

Все в порядке. После выполнения в среде pip install --upgrade --force-reinstall git+https://github.com/aimclub/FEDOT.git и установки fedot-0.7.1 все работает