acronyms.tex

%%%%%%%%%%%%%%%%%%%%%%acronym.tex%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% sample list of acronyms
%
% Use this file as a template for your own input.
%
%%%%%%%%%%%%%%%%%%%%%%%% Springer %%%%%%%%%%%%%%%%%%%%%%%%%%



%%%%%%%%%%%%%%%%%%%%%%%% Acronyms %%%%%%%%%%%%%%%%%%%%%%%%%%

\newacronym{opt}{OPT}{Optical Projection Tomography}
\newacronym{lsfm}{LSFM}{Light Sheet Fluorescence Microscopy}
\newacronym{ir}{IR}{infrared}
\newacronym{nir}{NIR}{near infrared}
\newacronym{nir1}{NIR-I}{first near infrared}
\newacronym{nir2}{NIR-II}{second near infrared}
\newacronym{fbp}{FBP}{filtered backprojection}
\newacronym{da}{DA}{Diffusion Approximation}
\newacronym{bl}{B-L}{Beer-Lambert}
\newacronym{mc}{MC}{Monte Carlo}
\newacronym{ocp}{OCP}{optical clearing potential}
\newacronym{rte}{RTE}{Radiative Transport Equation}
\newacronym{gpu}{GPU}{Graphics Processing Unit}
\newacronym{na}{NA}{numerical aperture}
\newacronym{bpm}{BPM}{beam propagation method}
\newacronym{psf}{PSF}{point spread function}
\newacronym{ls}{LS}{light sheet}
\newacronym{fov}{FOV}{field of view}
\newacronym{dof}{DOF}{depth of field}
\newacronym{mclsfm}{MC-LSFM}{Monte Carlo Light Sheet Fluorescence Microscopy}
\newacronym{spot}{SPOT}{Statistical Projection Optical Tomography}
\newacronym{spim}{SPIM}{Selective/Single Plane Illumination Microscopy}
\newacronym{dslm}{DSLM}{Digitally Scanned Light Sheet Microscopy}
\newacronym{aslm}{ASLM}{Axially Swept Light Sheet Microscopy}
\newacronym{etl}{ETL}{electrically tunable lens}
\newacronym{opm}{OPM}{Oblique Plane Microscopy}
\newacronym{rfs}{RFS}{Remote Focal Scanning}


%%%%%%%%%%%%%%%%%%%%%%%% Glossary %%%%%%%%%%%%%%%%%%%%%%%%%%
\newglossaryentry{intoto}
{
        name=\textit{in toto},
        description={As a whole}
}
\newglossaryentry{invivo}
{
        name=\textit{in vivo},
        description={Whole living organism or cell}
}
%%%%%%%%%%%%%%%%%%%%%%%% Symbols %%%%%%%%%%%%%%%%%%%%%%%%%%
\newglossaryentry{lambda}{
        symbol=[\si{\nano\metre}],
        type=symbols,
        name=$\lambda$,
        description={Wavelength}
    }
\newglossaryentry{mus}{
        symbol=[\si{\per\centi\metre}],
        type=symbols,
        name=$\mu_{s}$,
        description={Scattering Coefficient}
    }
    
\newglossaryentry{musr}{
        symbol=[\si{\per\centi\metre}],
        type=symbols,
        name=$\mu'_{s}$,
        description={Reduced Scattering Coefficient }
    }
    
\newglossaryentry{mua}{
        symbol=[\si{\per\centi\metre}],
        type=symbols,
        name=$\mu_{a}$,
        description={Absorption Coefficient }
    }
    
\newglossaryentry{mutr}{
        symbol=[\si{\per\centi\metre}],
        type=symbols,
        name=$\mu_{tr}$,
        description={Transport Coefficient }
    }
    
\newglossaryentry{mutrr}{
        symbol=[\si{\per\centi\metre}],
        type=symbols,
        name=$\mu'_{tr}$,
        description={Reduced Transport Coefficient}
    }
    
\newglossaryentry{g}{
        type=symbols,
        name={\ensuremath{g}},
        description={Scattering Anisotropy}
    }
    
\newglossaryentry{lsr}{
        symbol=[\si{\centi\metre}],
        type=symbols,
        name={$l'_s$},
        description={Scattering Mean Free Path}
    }
    \newglossaryentry{ltr}{
        symbol=[\si{\centi\metre}],
        type=symbols,
        name={$l^*_{tr}$},
        description={Transport Mean Free Path}
    }
\newglossaryentry{I}{
        symbol=[\si{\watt\per\centi\metre\squared\per\steradian}],
        type=symbols,
        name={$I(\mathbf{r},\hat{\mathbf{s}})$},
        description={Specific Intensity}
    }
\newglossaryentry{Id}{
        symbol=[\si{\watt\per\centi\metre\squared\per\steradian}],
        type=symbols,
        name={$I_{d}(\mathbf{r},\hat{\mathbf{s}})$},
        description={Diffuse Specific Intensity}
    }
\newglossaryentry{Iri}{
        symbol=[\si{\watt\per\centi\metre\squared\per\steradian}],
        type=symbols,
        name={$I_{ri}(\mathbf{r},\hat{\mathbf{s}})$},
        description={Reduced Specific Intensity}
    }
\newglossaryentry{Ur}{
        symbol=[\si{\watt\per\centi\metre\squared}],
        type=symbols,
        name={$U(\mathbf{r})$},
        description={Average Intensity}
    }
    \newglossaryentry{Uri}{
        symbol=[\si{\watt\per\centi\metre\squared}],
        type=symbols,
        name={$U_{ri}(\mathbf{r})$},
        description={Reduced Average Intensity}
    }
\newglossaryentry{Jr}{
        symbol=[\si{\watt\per\centi\metre\squared}],
        type=symbols,
        name={$\mathbf{\text{J}}(\mathbf{r})$},
        description={Total Flux Density}
    }
    \newglossaryentry{Jri}{
        symbol=[\si{\watt\per\centi\metre\squared}],
        type=symbols,
        name={$\mathbf{\text{J}}_{ri}(\mathbf{r})$},
        description={Reduced Total Flux Density}
    }
\newglossaryentry{Udr}{
        symbol=[\si{\watt\per\centi\metre\squared}],
        type=symbols,
        name={$U_{d}(\mathbf{r})$},
        description={Diffuse Average Intensity}
    }
\newglossaryentry{Jdr}{
        symbol=[\si{\watt\per\centi\metre\squared}],
        type=symbols,
        name={$\mathbf{\text{J}}_{d}(\mathbf{r})$},
        description={Diffuse Flux Density}
    }
    \newglossaryentry{D}{
        symbol=[\si{\centi\metre}],
        type=symbols,
        name={$D$},
        description={Diffusion Coefficient}
    }


%\glsxtrnewsymbol[description={scattering coefficient}]{mus}{$\mu_{s}$}
%\glsxtrnewsymbol[description={reduced scattering coefficient}]{musr}{$\mu'_{s}$}
%\glsxtrnewsymbol[description={absorption coefficient}]{mua}{$\mu_{a}$}


%\begin{description}[CABR]
%\item[ABC]{Spelled-out abbreviation and definition}
%\item[CABR]{Spelled-out abbreviation and definition}
%\item[BABI]{Spelled-out abbreviation and definition}

%\end{description}