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[SPARK-2075][Core] backport for branch-1.2 #3758

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[SPARK-2075][Core] backport for branch-1.2 #3758

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zsxwing
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@zsxwing zsxwing commented Dec 22, 2014

backport #3740 for branch-1.2

@zsxwing zsxwing mentioned this pull request Dec 22, 2014
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SparkQA commented Dec 22, 2014

Test build #24699 has started for PR 3758 at commit b57d440.

  • This patch merges cleanly.

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SparkQA commented Dec 22, 2014

Test build #24699 has finished for PR 3758 at commit b57d440.

  • This patch fails Spark unit tests.
  • This patch merges cleanly.
  • This patch adds no public classes.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/24699/
Test FAILed.

@rxin
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rxin commented Dec 22, 2014

Jenkins, retest this please.

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SparkQA commented Dec 22, 2014

Test build #24700 has started for PR 3758 at commit b57d440.

  • This patch merges cleanly.

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SparkQA commented Dec 22, 2014

Test build #24700 has finished for PR 3758 at commit b57d440.

  • This patch fails Spark unit tests.
  • This patch merges cleanly.
  • This patch adds no public classes.

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Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/SparkPullRequestBuilder/24700/
Test FAILed.

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zsxwing commented Dec 22, 2014

Looks there is some issue in HiveThriftServer2 in the branch-1.2? @liancheng

Exception in thread "main" java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
    at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346)
    at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235)
    at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231)
    at scala.Option.orElse(Option.scala:257)
    at org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231)
    at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229)
    at org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229)
    at org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229)
    at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292)
    at org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276)
    at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248)
    at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91)
    at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90)
    at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
    at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
    at org.apache.spark.sql.SQLContext.<init>(SQLContext.scala:90)
    at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:72)
    at org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51)
    at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56)
    at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358)
    at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75)
    at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
    at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412)
    at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:62)
    at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72)
    at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453)
    at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465)
    at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340)
    ... 26 more
Caused by: java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
    at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1410)
    ... 31 more
Caused by: javax.jdo.JDOFatalInternalException: Unexpected exception caught.
NestedThrowables:
java.lang.reflect.InvocationTargetException
    at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1193)
    at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
    at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
    at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:310)
    at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:339)
    at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:248)
    at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:223)
    at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
    at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
    at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:58)
    at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:67)
    at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:497)
    at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:475)
    at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:523)
    at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:397)
    at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:356)
    at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:54)
    at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:59)
    at org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4944)
    at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:171)
    ... 36 more
Caused by: java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at javax.jdo.JDOHelper$16.run(JDOHelper.java:1965)
    at java.security.AccessController.doPrivileged(Native Method)
    at javax.jdo.JDOHelper.invoke(JDOHelper.java:1960)
    at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1166)
    ... 55 more
Caused by: java.lang.NoSuchFieldError: flushProcess
    at org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:296)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
    at org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
    at org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
    at org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
    at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
    at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.freezeConfiguration(JDOPersistenceManagerFactory.java:775)
    at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.createPersistenceManagerFactory(JDOPersistenceManagerFactory.java:333)
    at org.datanucleus.api.jdo.JDOPersistenceManagerFactory.getPersistenceManagerFactory(JDOPersistenceManagerFactory.java:202)
    ... 63 more

@liancheng
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This is probably caused by SPARK-4914, which is a bug in dev/run-tests and doesn't affect production code. PR #3756 was opened to fix this.

@rxin
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rxin commented Dec 22, 2014

I'm merging this since I really only wanted to check for compilation. Thanks.

asfgit pushed a commit that referenced this pull request Dec 22, 2014
@zsxwing @rxin
[SPARK-2075][Core] backport for branch-1.2
b896963 
backport #3740 for branch-1.2

Author: zsxwing <[email protected]>

Closes #3758 from zsxwing/SPARK-2075-branch-1.2 and squashes the following commits:

b57d440 [zsxwing] SPARK-2075 backport for branch-1.2
@rxin
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rxin commented Dec 22, 2014

Alright I've merged this. Do you mind closing the PR? Github doesn't close it unless the commit is merged into master.

@zsxwing
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zsxwing commented Dec 23, 2014

OK. Closed it.

@zsxwing zsxwing closed this Dec 23, 2014
@zsxwing zsxwing deleted the SPARK-2075-branch-1.2 branch December 23, 2014 02:09
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@zsxwing @SparkQA @AmplabJenkins @rxin @liancheng