You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
When running soapdenovo in my linux system its gives multiple definition of b_ban' usr/bin/ld: standardPregraph/attachPEinfo.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/bubble.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/check.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/compactEdge.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/concatenateEdge.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/connect.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/contig.o:(.bss+0x100): multiple definition of shortrdsfile'; sparsePregraph/global.o:(.bss+0x1e0): first defined here
/usr/bin/ld: standardPregraph/contig.o:(.bss+0x0): multiple definition of graphfile'; sparsePregraph/global.o:(.bss+0xe0): first defined here /usr/bin/ld: standardPregraph/contig.o:(.bss+0x200): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/cutTipPreGraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/cutTip_graph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/cutTip_graph2.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/hashFunction.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/iterate.o:(.bss+0x48): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/kmer.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/kmerhash.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/lib.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/linearEdge.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/loadGraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/loadPath.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/loadPreGraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/localAsm.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/main.o:(.bss+0x32c): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/map.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/mem_manager.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/newhash.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/node2edge.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/orderContig.o:(.bss+0xc): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/output_contig.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/output_pregraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/output_scaffold.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/pregraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlHashCtg.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/prlHashReads.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlRead2Ctg.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/prlRead2path.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlReadFillGap.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/read2edge.o:(.bss+0x0): multiple definition of locks'; sparsePregraph/global.o:(.bss+0x70): first defined here /usr/bin/ld: standardPregraph/read2edge.o:(.bss+0x40): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/read2scaf.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/readInterval.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/readseq1by1.o:(.bss+0x8): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/scaffold.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/searchPath.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/seq.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/splitReps.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: ./sparsePregraph/inc/libbam.a(bam.o): relocation R_X86_64_32 against .rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE
/usr/bin/ld: failed to set dynamic section sizes: bad value
collect2: error: ld returned 1 exit status
make: *** [Makefile:58: SOAPdenovo-63mer] Error 1
The text was updated successfully, but these errors were encountered:
When running soapdenovo in my linux system its gives multiple definition of
b_ban' usr/bin/ld: standardPregraph/attachPEinfo.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/bubble.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/check.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/compactEdge.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/concatenateEdge.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/connect.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/contig.o:(.bss+0x100): multiple definition of
shortrdsfile'; sparsePregraph/global.o:(.bss+0x1e0): first defined here/usr/bin/ld: standardPregraph/contig.o:(.bss+0x0): multiple definition of
graphfile'; sparsePregraph/global.o:(.bss+0xe0): first defined here /usr/bin/ld: standardPregraph/contig.o:(.bss+0x200): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/cutTipPreGraph.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/cutTip_graph.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/cutTip_graph2.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/hashFunction.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/iterate.o:(.bss+0x48): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/kmer.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/kmerhash.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/lib.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/linearEdge.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/loadGraph.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/loadPath.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/loadPreGraph.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/localAsm.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/main.o:(.bss+0x32c): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/map.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/mem_manager.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/newhash.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/node2edge.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/orderContig.o:(.bss+0xc): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/output_contig.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/output_pregraph.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/output_scaffold.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/pregraph.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlHashCtg.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/prlHashReads.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlRead2Ctg.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/prlRead2path.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlReadFillGap.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/read2edge.o:(.bss+0x0): multiple definition of
locks'; sparsePregraph/global.o:(.bss+0x70): first defined here /usr/bin/ld: standardPregraph/read2edge.o:(.bss+0x40): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/read2scaf.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/readInterval.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/readseq1by1.o:(.bss+0x8): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/scaffold.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/searchPath.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/seq.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here/usr/bin/ld: standardPregraph/splitReps.o:(.bss+0x0): multiple definition of
b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: ./sparsePregraph/inc/libbam.a(bam.o): relocation R_X86_64_32 against
.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE/usr/bin/ld: failed to set dynamic section sizes: bad value
collect2: error: ld returned 1 exit status
make: *** [Makefile:58: SOAPdenovo-63mer] Error 1
The text was updated successfully, but these errors were encountered: