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train.py
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from __future__ import division, print_function
import operator
import time
from pprint import pprint
from models.infvae_models import InfVAESocial, InfVAECascades
from utils.preprocess import *
from utils.flags import *
os.environ["CUDA_VISIBLE_DEVICES"] = FLAGS.cuda_device
flags = tf.compat.v1.flags
FLAGS = flags.FLAGS
# Set logs directory parameters.
LOG_DIR = "log/"
OUTPUT_DATA_DIR = "log/output/"
ensure_dir(LOG_DIR)
ensure_dir(OUTPUT_DATA_DIR)
datetime_str = datetime.now().strftime("%Y%m%d_%H%M%S")
today = datetime.today()
log_file = LOG_DIR + '%s_%s_%s_%s.log' % (FLAGS.dataset.split(
"/")[0], str(today.year), str(today.month), str(today.day))
#--
def predict(session, model, feed):
""" Helper function to compute model predictions. """
recall_scores, map_scores, n_samples, top_k, target = \
session.run([model.recall_scores, model.map_scores, model.relevance_scores,
model.top_k_filter, model.targets], feed_dict=feed)
return recall_scores, map_scores, n_samples.shape[0], top_k, target
with ExpLogger("Inf-VAE", log_file=log_file, data_dir=OUTPUT_DATA_DIR) as logger:
# log training parameters
try:
logger.log(FLAGS.flag_values_dict())
except:
logger.log(FLAGS.__flags.items())
''' Load data: the datasets are expected to be pre-processed in an appropriate format. The assumption is that the
users appearing in cascades must also appear in the graph, while the converse may not be true.
Thus, the user indices are created based on the graph. '''
A = load_graph(FLAGS.dataset)
if FLAGS.use_feats:
X = load_feats(FLAGS.dataset)
else:
X = np.eye(A.shape[0])
num_nodes = A.shape[0]
layers_config = list(map(int, FLAGS.vae_layer_config.split(",")))
if num_nodes % FLAGS.vae_batch_size == 0:
num_batches_vae = num_nodes // FLAGS.vae_batch_size
else:
num_batches_vae = num_nodes // FLAGS.vae_batch_size + 1
if FLAGS.graph_AE == 'GCN':
num_batches_vae = 1
train_cascades, train_times = load_cascades(FLAGS.dataset, mode='train')
val_cascades, val_times = load_cascades(FLAGS.dataset, mode='val')
test_cascades, test_times = load_cascades(FLAGS.dataset, mode='test')
# Truncating input data based on max_seq_length.
train_examples, train_examples_times = get_data_set(train_cascades, train_times,
max_len=FLAGS.max_seq_length,
mode='train')
val_examples, val_examples_times = get_data_set(val_cascades, val_times,
max_len=FLAGS.max_seq_length,
mode='val')
test_examples, test_examples_times = get_data_set(test_cascades, test_times,
max_len=FLAGS.max_seq_length,
test_min_percent=FLAGS.test_min_percent,
test_max_percent=FLAGS.test_max_percent,
mode='test')
print("# nodes in graph", num_nodes)
print("# train cascades", len(train_cascades))
print("Init models")
VGAE = InfVAESocial(X.shape[1], A, layers_config, mode='train', feats=X)
CoAtt = InfVAECascades(num_nodes + 1, train_examples, train_examples_times,
val_examples, val_examples_times,
test_examples, test_examples_times,
logging=True, mode='feed')
# Initialize session
config = tf.compat.v1.ConfigProto()
config.gpu_options.allow_growth = True
sess = tf.compat.v1.Session(config=config)
# Init variables
print("Run global var initializer")
sess.run(tf.global_variables_initializer())
print("Starting queue runners")
coord = tf.train.Coordinator()
threads = tf.train.start_queue_runners(sess=sess, coord=coord)
z_vae_embeds = np.zeros([num_nodes + 1, FLAGS.latent_dim])
logger.log("======VAE Pre-train=======")
# Step 0: Pre-training using simple VAE on social network.
for epoch in range(FLAGS.pretrain_epochs):
losses = []
for b in range(0, num_batches_vae):
# Training step
input_feed = VGAE.construct_feed_dict(
v_sender_all=z_vae_embeds,
v_receiver_all=z_vae_embeds,
pre_train=True,
dropout=FLAGS.vae_dropout_rate)
_, vae_embeds, indices, train_loss = sess.run([
VGAE.opt_op, VGAE.z_mean, VGAE.node_indices, VGAE.vae_pre_train_loss
], input_feed)
z_vae_embeds[indices] = vae_embeds
losses.append(train_loss)
epoch_loss = np.mean(losses)
logger.log("Mean VAE loss at epoch: %04d %.5f" % (epoch + 1, epoch_loss))
logger.log("Pre-training completed")
# Initial run to get embeddings.
logger.log("Initial run to get embeddings")
for b in range(0, num_batches_vae):
t = time.time()
indices, z_val = sess.run([VGAE.node_indices, VGAE.z_mean])
z_vae_embeds[indices] = z_val
s = time.time()
val_loss_all = []
sender_embeds = np.copy(z_vae_embeds)
receiver_embeds = np.copy(z_vae_embeds)
for epoch in range(FLAGS.epochs):
# Train
# Step 1: VAE on Social Network.
losses = []
input_feed = VGAE.construct_feed_dict(
v_sender_all=sender_embeds,
v_receiver_all=receiver_embeds,
dropout=FLAGS.vae_dropout_rate)
for b in range(0, num_batches_vae):
# Training step
_, vae_embeds, indices, train_loss = sess.run([VGAE.opt_op, VGAE.z_mean, VGAE.node_indices,
VGAE.social_loss], input_feed)
z_vae_embeds[indices] = vae_embeds
losses.append(train_loss)
epoch_loss = np.mean(losses)
logger.log("Mean VAE loss at epoch: %04d %.5f" % (epoch + 1, epoch_loss))
# Step 2: Diffusion Cascades
losses = []
input_feed = CoAtt.construct_feed_dict(z_vae_embeddings=z_vae_embeds)
for b in range(0, CoAtt.num_train_batches):
_, train_loss = sess.run([CoAtt.opt_op, CoAtt.diffusion_loss], input_feed)
losses.append(train_loss)
# re-assign based on updated sender, receiver embeddings.
sender_embeds = sess.run(CoAtt.sender_embeddings)
receiver_embeds = sess.run(CoAtt.receiver_embeddings)
epoch_loss = np.mean(losses)
logger.log("Mean Attention loss at epoch: %04d %.5f" % (epoch + 1, epoch_loss))
# Testing
if epoch % FLAGS.test_freq == 0:
input_feed = VGAE.construct_feed_dict(v_sender_all=sender_embeds,
v_receiver_all=receiver_embeds, dropout=0.)
for _ in range(0, num_batches_vae):
vae_embeds, indices = sess.run([VGAE.z_mean, VGAE.node_indices], input_feed)
z_vae_embeds[indices] = vae_embeds
input_feed = CoAtt.construct_feed_dict(z_vae_embeddings=z_vae_embeds, is_test=True)
total_samples = 0
num_eval_k = len(CoAtt.k_list)
avg_map_scores, avg_recall_scores = [0.] * num_eval_k, [0.] * num_eval_k
all_outputs, all_targets = [], []
for b in range(0, CoAtt.num_test_batches):
recalls, maps, num_samples, decoder_outputs, decoder_targets = predict(
sess, CoAtt, input_feed)
all_outputs.append(decoder_outputs)
all_targets.append(decoder_targets)
avg_map_scores = list(
map(operator.add, map(operator.mul, maps,
[num_samples] * num_eval_k), avg_map_scores))
avg_recall_scores = list(map(operator.add, map(operator.mul, recalls,
[num_samples] * num_eval_k), avg_recall_scores))
total_samples += num_samples
all_outputs = np.vstack(all_outputs)
all_targets = np.vstack(all_targets)
avg_map_scores = list(map(operator.truediv, avg_map_scores, [total_samples] * num_eval_k))
avg_recall_scores = list(map(operator.truediv, avg_recall_scores, [total_samples] * num_eval_k))
metrics = dict()
for k in range(0, num_eval_k):
K = CoAtt.k_list[k]
metrics["MAP@%d" % K] = avg_map_scores[k]
metrics["Recall@%d" % K] = avg_recall_scores[k]
logger.update_record(avg_map_scores[0], (all_outputs, all_targets, metrics))
# Validation
if epoch % FLAGS.val_freq == 0:
input_feed = VGAE.construct_feed_dict(
v_sender_all=sender_embeds, v_receiver_all=receiver_embeds, dropout=0.)
for b in range(0, num_batches_vae):
vae_embeds, indices = sess.run([VGAE.z_mean, VGAE.node_indices], input_feed)
z_vae_embeds[indices] = vae_embeds
losses = []
num_eval_k = len(CoAtt.k_list)
input_feed = CoAtt.construct_feed_dict(z_vae_embeddings=z_vae_embeds, is_val=True)
for b in range(0, CoAtt.num_val_batches):
val_loss = sess.run([CoAtt.diffusion_loss], input_feed)
losses.append(val_loss)
epoch_loss = np.mean(losses)
val_loss_all.append(epoch_loss)
logger.log("Validation Attention loss at epoch: %04d %.5f" % (epoch + 1, epoch_loss))
# early stopping
if len(val_loss_all) >= FLAGS.early_stopping and val_loss_all[-1] > np.mean(
val_loss_all[-(FLAGS.early_stopping + 1):-1]):
logger.log("Early stopping at epoch: %04d" % (epoch + 1))
break
# print evaluation metrics
outputs, targets, metrics = logger.best_data
print("Evaluation metrics on test set:")
pprint(metrics)
# stop queue runners
coord.request_stop()
coord.join(threads)