Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Installation Issue #5

Open
vestalgd opened this issue Aug 19, 2024 · 1 comment
Open

Installation Issue #5

vestalgd opened this issue Aug 19, 2024 · 1 comment

Comments

@vestalgd
Copy link

This is most likely a "me" issue, but I've followed the instructions for installation and I'm currently processing in a Jupyter notebook. I can load data:

data = io.read_input('data/matrix.mtx.gz')

When I execute

df_qc = ddqc.ddqc_metrics(data, return_df_qc=True)

I'm met with this error:

AttributeError Traceback (most recent call last)
Cell In[40], line 1
----> 1 df_qc = ddqc.ddqc_metrics(data, return_df_qc=True)

AttributeError: module 'ddqc' has no attribute 'ddqc_metrics'

Any thoughts on if I mismanaged the install or what could be happening? Thanks!

@vestalgd
Copy link
Author

After looking into this further, I get the following message:

DEPRECATION: Loading egg at /Users/gvestal/miniconda3/lib/python3.12/site-packages/ddqc-0.3.0-py3.12.egg is deprecated. pip 24.3 will enforce this behaviour change. A possible replacement is to use pip for package installation. Discussion can be found at pypa/pip#12330

With the recent pip changes to egg, can ddqc still be installed or do some changed need to be made to install with the wheel application?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant