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Fix double file prefix; update VCF parsing #66

Merged
merged 9 commits into from
Feb 12, 2024
Merged

Fix double file prefix; update VCF parsing #66

merged 9 commits into from
Feb 12, 2024

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johnlees
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Updated the dependencies, including noodles which required some code changes. VCF header is more careful with chromosome names removing whitespace.

Also prevents .skf.skf file outputs

Closes #64
Closes #65

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codecov bot commented Feb 12, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (df6b0a7) 92.50% compared to head (05b9824) 92.42%.

Additional details and impacted files
@@            Coverage Diff             @@
##           master      #66      +/-   ##
==========================================
- Coverage   92.50%   92.42%   -0.08%     
==========================================
  Files          16       16              
  Lines        2267     2272       +5     
==========================================
+ Hits         2097     2100       +3     
- Misses        170      172       +2     

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@johnlees johnlees merged commit b99a298 into master Feb 12, 2024
8 of 9 checks passed
@johnlees johnlees deleted the weed-skf branch February 12, 2024 17:28
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