diff --git a/Makefile b/Makefile index f34d3938d8..178de6a746 100644 --- a/Makefile +++ b/Makefile @@ -122,7 +122,6 @@ db-container: ## Executes into database container. @echo "Make: Shelling into database container" @echo "===============================================" @export PGPASSWORD=$(DB_ADMIN_PASS) - @ app-container: ## Executes into the app container. @echo "===============================================" diff --git a/api/package-lock.json b/api/package-lock.json index 0cab9949f9..35ff7ff65d 100644 --- a/api/package-lock.json +++ b/api/package-lock.json @@ -2965,7 +2965,7 @@ "encodeurl": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/encodeurl/-/encodeurl-1.0.2.tgz", - "integrity": "sha1-rT/0yG7C0CkyL1oCw6mmBslbP1k=" + "integrity": "sha512-TPJXq8JqFaVYm2CWmPvnP2Iyo4ZSM7/QKcSmuMLDObfpH5fi7RUGmd/rTDf+rut/saiDiQEeVTNgAmJEdAOx0w==" }, "end-of-stream": { "version": "1.4.4", @@ -3097,7 +3097,7 @@ "escape-html": { "version": "1.0.3", "resolved": "https://registry.npmjs.org/escape-html/-/escape-html-1.0.3.tgz", - "integrity": "sha1-Aljq5NPQwJdN4cFpGI7wBR0dGYg=" + "integrity": "sha512-NiSupZ4OeuGwr68lGIeym/ksIZMJodUGOSCZ/FSnTxcrekbvqrgdUxlJOMpijaKZVjAJrWrGs/6Jy8OMuyj9ow==" }, "escape-string-regexp": { "version": "1.0.5", @@ -3371,7 +3371,7 @@ "etag": { "version": "1.8.1", "resolved": "https://registry.npmjs.org/etag/-/etag-1.8.1.tgz", - "integrity": "sha1-Qa4u62XvpiJorr/qg6x9eSmbCIc=" + "integrity": "sha512-aIL5Fx7mawVa300al2BnEE4iNvo1qETxLrPI/o05L7z6go7fCw1J6EQmbK4FmJ2AS7kgVF/KEZWufBfdClMcPg==" }, "events": { "version": "1.1.1", @@ -4003,7 +4003,7 @@ "fresh": { "version": "0.5.2", "resolved": "https://registry.npmjs.org/fresh/-/fresh-0.5.2.tgz", - "integrity": "sha1-PYyt2Q2XZWn6g1qx+OSyOhBWBac=" + "integrity": "sha512-zJ2mQYM18rEFOudeV4GShTGIQ7RbzA7ozbU9I/XBpm7kqgMywgmylMwXHxZJmkVoYkna9d2pVXVXPdYTP9ej8Q==" }, "fromentries": { "version": "1.3.2", @@ -5030,7 +5030,7 @@ "is-dir": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/is-dir/-/is-dir-1.0.0.tgz", - "integrity": "sha1-QdN/SV/MrMBaR3jWboMCTCkro/8=" + "integrity": "sha512-vLwCNpTNkFC5k7SBRxPubhOCryeulkOsSkjbGyZ8eOzZmzMS+hSEO/Kn9ZOVhFNAlRZTFc4ZKql48hESuYUPIQ==" }, "is-extendable": { "version": "0.1.1", @@ -9094,7 +9094,7 @@ "unpipe": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/unpipe/-/unpipe-1.0.0.tgz", - "integrity": "sha1-sr9O6FFKrmFltIF4KdIbLvSZBOw=" + "integrity": "sha512-pjy2bYhSsufwWlKwPc+l3cN7+wuJlK6uz0YdJEOlQDbl6jo/YlPi4mb8agUkVC8BF7V8NuzeyPNqRksA3hztKQ==" }, "unset-value": { "version": "1.0.0", diff --git a/api/src/models/survey-create.test.ts b/api/src/models/survey-create.test.ts index dd24d63f85..2ccdabedb8 100644 --- a/api/src/models/survey-create.test.ts +++ b/api/src/models/survey-create.test.ts @@ -2,7 +2,6 @@ import { expect } from 'chai'; import { describe } from 'mocha'; import { PostAgreementsData, - PostLocationData, PostPartnershipsData, PostPermitData, PostProprietorData, @@ -362,54 +361,6 @@ describe('PostProprietorData', () => { }); }); -describe('PostLocationData', () => { - describe('No values provided', () => { - let data: PostLocationData; - - before(() => { - data = new PostLocationData(null); - }); - - it('sets name', () => { - expect(data.name).to.equal(null); - }); - - it('sets description', () => { - expect(data.description).to.equal(null); - }); - - it('sets geojson', () => { - expect(data.geojson).to.eql([]); - }); - }); - - describe('All values provided with first nations id', () => { - let data: PostLocationData; - - const obj = { - name: 'area name', - description: 'area description', - geojson: [{}] - }; - - before(() => { - data = new PostLocationData(obj); - }); - - it('sets name', () => { - expect(data.name).to.equal(obj.name); - }); - - it('sets description', () => { - expect(data.description).to.equal(obj.description); - }); - - it('sets geojson', () => { - expect(data.geojson).to.eql(obj.geojson); - }); - }); -}); - describe('PostPurposeAndMethodologyData', () => { describe('No values provided', () => { let data: PostPurposeAndMethodologyData; diff --git a/api/src/models/survey-create.ts b/api/src/models/survey-create.ts index 4d1edffe16..2c479174ce 100644 --- a/api/src/models/survey-create.ts +++ b/api/src/models/survey-create.ts @@ -1,6 +1,6 @@ -import { Feature } from 'geojson'; import { SurveyStratum } from '../repositories/site-selection-strategy-repository'; import { PostSurveyBlock } from '../repositories/survey-block-repository'; +import { PostSurveyLocationData } from './survey-update'; export class PostSurveyObject { survey_details: PostSurveyDetailsData; @@ -9,7 +9,7 @@ export class PostSurveyObject { funding_sources: PostFundingSourceData[]; proprietor: PostProprietorData; purpose_and_methodology: PostPurposeAndMethodologyData; - locations: PostLocationData[]; + locations: PostSurveyLocationData[]; agreements: PostAgreementsData; participants: PostParticipationData[]; partnerships: PostPartnershipsData; @@ -29,7 +29,7 @@ export class PostSurveyObject { this.participants = (obj?.participants?.length && obj.participants.map((p: any) => new PostParticipationData(p))) || []; this.partnerships = (obj?.partnerships && new PostPartnershipsData(obj.partnerships)) || null; - this.locations = (obj?.locations && obj.locations.map((p: any) => new PostLocationData(p))) || []; + this.locations = (obj?.locations && obj.locations.map((p: any) => new PostSurveyLocationData(p))) || []; this.site_selection = (obj?.site_selection && new PostSiteSelectionData(obj)) || null; this.blocks = (obj?.blocks && obj.blocks.map((p: any) => p as PostSurveyBlock)) || []; } @@ -120,18 +120,6 @@ export class PostProprietorData { } } -export class PostLocationData { - name: string; - description: string; - geojson: Feature[]; - - constructor(obj?: any) { - this.name = obj?.name || null; - this.description = obj?.description || null; - this.geojson = (obj?.geojson?.length && obj.geojson) || []; - } -} - export class PostPurposeAndMethodologyData { intended_outcome_id: number; additional_details: string; diff --git a/api/src/models/survey-update.test.ts b/api/src/models/survey-update.test.ts index d3e393eca3..7d3a87d5fc 100644 --- a/api/src/models/survey-update.test.ts +++ b/api/src/models/survey-update.test.ts @@ -1,9 +1,9 @@ import { expect } from 'chai'; import { describe } from 'mocha'; import { + PostSurveyLocationData, PutPartnershipsData, PutSurveyDetailsData, - PutSurveyLocationData, PutSurveyObject, PutSurveyPermitData, PutSurveyProprietorData, @@ -410,10 +410,10 @@ describe('PutPurposeAndMethodologyData', () => { describe('PutLocationData', () => { describe('No values provided', () => { - let data: PutSurveyLocationData; + let data: PostSurveyLocationData; before(() => { - data = new PutSurveyLocationData(null); + data = new PostSurveyLocationData(null); }); it('sets name', () => { @@ -421,7 +421,7 @@ describe('PutLocationData', () => { }); it('sets description', () => { - expect(data.description).to.equal(null); + expect(data.description).to.equal(''); }); it('sets geojson', () => { @@ -434,7 +434,7 @@ describe('PutLocationData', () => { }); describe('All values provided with first nations id', () => { - let data: PutSurveyLocationData; + let data: PostSurveyLocationData; const obj = { name: 'area name', @@ -444,7 +444,7 @@ describe('PutLocationData', () => { }; before(() => { - data = new PutSurveyLocationData(obj); + data = new PostSurveyLocationData(obj); }); it('sets name', () => { diff --git a/api/src/models/survey-update.ts b/api/src/models/survey-update.ts index 301fc2a1a0..561efacb8c 100644 --- a/api/src/models/survey-update.ts +++ b/api/src/models/survey-update.ts @@ -9,7 +9,7 @@ export class PutSurveyObject { funding_sources: PutFundingSourceData[]; proprietor: PutSurveyProprietorData; purpose_and_methodology: PutSurveyPurposeAndMethodologyData; - locations: PutSurveyLocationData[]; + locations: PostSurveyLocationData[]; participants: PutSurveyParticipantsData[]; partnerships: PutPartnershipsData; site_selection: PutSiteSelectionData; @@ -26,7 +26,7 @@ export class PutSurveyObject { (obj?.purpose_and_methodology && new PutSurveyPurposeAndMethodologyData(obj.purpose_and_methodology)) || null; this.participants = (obj?.participants?.length && obj.participants.map((p: any) => new PutSurveyParticipantsData(p))) || []; - this.locations = (obj?.locations && obj.locations.map((p: any) => new PutSurveyLocationData(p))) || []; + this.locations = (obj?.locations && obj.locations.map((p: any) => new PostSurveyLocationData(p))) || []; this.partnerships = (obj?.partnerships && new PutPartnershipsData(obj.partnerships)) || null; this.site_selection = (obj?.site_selection && new PutSiteSelectionData(obj)) || null; this.blocks = (obj?.blocks && obj.blocks.map((p: any) => p as PostSurveyBlock)) || []; @@ -150,17 +150,18 @@ export class PutSurveyPurposeAndMethodologyData { } } -export class PutSurveyLocationData { - survey_location_id: number; +// This class is used for both insert and updating a survey location +export class PostSurveyLocationData { + survey_location_id: number | undefined; name: string; description: string; geojson: Feature[]; - revision_count: number; + revision_count: number | undefined; constructor(obj?: any) { this.survey_location_id = obj?.survey_location_id || null; this.name = obj?.name || null; - this.description = obj?.description || null; + this.description = obj?.description || ''; this.geojson = (obj?.geojson?.length && obj.geojson) || []; this.revision_count = obj?.revision_count ?? null; } diff --git a/api/src/paths/funding-sources/index.ts b/api/src/paths/funding-sources/index.ts index da974d9d6e..e126d75a9b 100644 --- a/api/src/paths/funding-sources/index.ts +++ b/api/src/paths/funding-sources/index.ts @@ -6,6 +6,7 @@ import { FundingSource, FundingSourceSupplementaryData } from '../../repositorie import { SystemUser } from '../../repositories/user-repository'; import { authorizeRequestHandler } from '../../request-handlers/security/authorization'; import { FundingSourceService, IFundingSourceSearchParams } from '../../services/funding-source-service'; +import { UserService } from '../../services/user-service'; import { getLogger } from '../../utils/logger'; const defaultLog = getLogger('paths/funding-sources/index'); @@ -121,7 +122,7 @@ export function getFundingSources(): RequestHandler { await connection.commit(); const systemUserObject: SystemUser = req['system_user']; - if (!isAdmin(systemUserObject)) { + if (!UserService.isAdmin(systemUserObject)) { // User is not an admin, strip sensitive fields from response response = removeNonAdminFieldsFromFundingSourcesResponse(response); } @@ -137,19 +138,6 @@ export function getFundingSources(): RequestHandler { }; } -/** - * Checks if the system user is an admin (has an admin level system role). - * - * @param {SystemUser} systemUserObject - * @return {*} {boolean} `true` if the user is an admin, `false` otherwise. - */ -function isAdmin(systemUserObject: SystemUser): boolean { - return ( - systemUserObject.role_names.includes(SYSTEM_ROLE.SYSTEM_ADMIN) || - systemUserObject.role_names.includes(SYSTEM_ROLE.DATA_ADMINISTRATOR) - ); -} - /** * Removes sensitive (admin-only) fields from the funding sources response, returning a new sanitized array. * diff --git a/api/src/paths/project/{projectId}/attachments/{attachmentId}/delete.ts b/api/src/paths/project/{projectId}/attachments/{attachmentId}/delete.ts index 2d643a2b2f..846ec36cd3 100644 --- a/api/src/paths/project/{projectId}/attachments/{attachmentId}/delete.ts +++ b/api/src/paths/project/{projectId}/attachments/{attachmentId}/delete.ts @@ -5,6 +5,7 @@ import { getDBConnection } from '../../../../../database/db'; import { SystemUser } from '../../../../../repositories/user-repository'; import { authorizeRequestHandler } from '../../../../../request-handlers/security/authorization'; import { AttachmentService } from '../../../../../services/attachment-service'; +import { UserService } from '../../../../../services/user-service'; import { getLogger } from '../../../../../utils/logger'; import { attachmentApiDocObject } from '../../../../../utils/shared-api-docs'; @@ -104,15 +105,12 @@ export function deleteAttachment(): RequestHandler { const attachmentService = new AttachmentService(connection); const systemUserObject: SystemUser = req['system_user']; - const isAdmin = - systemUserObject.role_names.includes(SYSTEM_ROLE.SYSTEM_ADMIN) || - systemUserObject.role_names.includes(SYSTEM_ROLE.DATA_ADMINISTRATOR); await attachmentService.handleDeleteProjectAttachment( Number(req.params.projectId), Number(req.params.attachmentId), req.body.attachmentType, - isAdmin + UserService.isAdmin(systemUserObject) ); await connection.commit(); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/attachments/{attachmentId}/delete.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/attachments/{attachmentId}/delete.ts index 393b117676..ea625b0462 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/attachments/{attachmentId}/delete.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/attachments/{attachmentId}/delete.ts @@ -5,6 +5,7 @@ import { getDBConnection } from '../../../../../../../database/db'; import { SystemUser } from '../../../../../../../repositories/user-repository'; import { authorizeRequestHandler } from '../../../../../../../request-handlers/security/authorization'; import { AttachmentService } from '../../../../../../../services/attachment-service'; +import { UserService } from '../../../../../../../services/user-service'; import { getLogger } from '../../../../../../../utils/logger'; import { attachmentApiDocObject } from '../../../../../../../utils/shared-api-docs'; @@ -110,15 +111,12 @@ export function deleteAttachment(): RequestHandler { const attachmentService = new AttachmentService(connection); const systemUserObject: SystemUser = req['system_user']; - const isAdmin = - systemUserObject.role_names.includes(SYSTEM_ROLE.SYSTEM_ADMIN) || - systemUserObject.role_names.includes(SYSTEM_ROLE.DATA_ADMINISTRATOR); await attachmentService.handleDeleteSurveyAttachment( Number(req.params.surveyId), Number(req.params.attachmentId), req.body.attachmentType, - isAdmin + UserService.isAdmin(systemUserObject) ); await connection.commit(); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/get.test.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/get.test.ts similarity index 99% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/get.test.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/get.test.ts index be326f100d..202c81908b 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/get.test.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/get.test.ts @@ -8,16 +8,16 @@ import { MESSAGE_CLASS_NAME, SUBMISSION_MESSAGE_TYPE, SUBMISSION_STATUS_TYPE -} from '../../../../../../../constants/status'; -import * as db from '../../../../../../../database/db'; -import { OccurrenceSubmissionPublish } from '../../../../../../../repositories/history-publish-repository'; +} from '../../../../../../../../constants/status'; +import * as db from '../../../../../../../../database/db'; +import { OccurrenceSubmissionPublish } from '../../../../../../../../repositories/history-publish-repository'; import { IGetLatestSurveyOccurrenceSubmission, SurveyRepository -} from '../../../../../../../repositories/survey-repository'; -import { HistoryPublishService } from '../../../../../../../services/history-publish-service'; -import { SurveyService } from '../../../../../../../services/survey-service'; -import { getMockDBConnection } from '../../../../../../../__mocks__/db'; +} from '../../../../../../../../repositories/survey-repository'; +import { HistoryPublishService } from '../../../../../../../../services/history-publish-service'; +import { SurveyService } from '../../../../../../../../services/survey-service'; +import { getMockDBConnection } from '../../../../../../../../__mocks__/db'; import * as observationSubmission from './get'; chai.use(sinonChai); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/get.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/get.ts similarity index 95% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/get.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/get.ts index 163cb3044a..02d467da67 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/get.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/get.ts @@ -1,14 +1,14 @@ import { RequestHandler } from 'express'; import { Operation } from 'express-openapi'; -import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../../constants/roles'; -import { SUBMISSION_STATUS_TYPE } from '../../../../../../../constants/status'; -import { getDBConnection } from '../../../../../../../database/db'; -import { authorizeRequestHandler } from '../../../../../../../request-handlers/security/authorization'; -import { HistoryPublishService } from '../../../../../../../services/history-publish-service'; -import { IMessageTypeGroup, SurveyService } from '../../../../../../../services/survey-service'; -import { getLogger } from '../../../../../../../utils/logger'; +import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../../../constants/roles'; +import { SUBMISSION_STATUS_TYPE } from '../../../../../../../../constants/status'; +import { getDBConnection } from '../../../../../../../../database/db'; +import { authorizeRequestHandler } from '../../../../../../../../request-handlers/security/authorization'; +import { HistoryPublishService } from '../../../../../../../../services/history-publish-service'; +import { IMessageTypeGroup, SurveyService } from '../../../../../../../../services/survey-service'; +import { getLogger } from '../../../../../../../../utils/logger'; -const defaultLog = getLogger('/api/project/{projectId}/survey/{surveyId}/observation/submission/get'); +const defaultLog = getLogger('/api/project/{projectId}/survey/{surveyId}/dwca/observations/submission/get'); export const GET: Operation = [ authorizeRequestHandler((req) => { diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/upload.test.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/upload.test.ts similarity index 96% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/upload.test.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/upload.test.ts index 3bb88c2db7..25061bfc31 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/upload.test.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/upload.test.ts @@ -2,11 +2,11 @@ import chai, { expect } from 'chai'; import { describe } from 'mocha'; import sinon from 'sinon'; import sinonChai from 'sinon-chai'; -import * as db from '../../../../../../../database/db'; -import { HTTPError } from '../../../../../../../errors/http-error'; -import { SurveyService } from '../../../../../../../services/survey-service'; -import * as file_utils from '../../../../../../../utils/file-utils'; -import { getMockDBConnection, getRequestHandlerMocks } from '../../../../../../../__mocks__/db'; +import * as db from '../../../../../../../../database/db'; +import { HTTPError } from '../../../../../../../../errors/http-error'; +import { SurveyService } from '../../../../../../../../services/survey-service'; +import * as file_utils from '../../../../../../../../utils/file-utils'; +import { getMockDBConnection, getRequestHandlerMocks } from '../../../../../../../../__mocks__/db'; import * as upload from './upload'; chai.use(sinonChai); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/upload.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/upload.ts similarity index 90% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/upload.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/upload.ts index 0c924350ce..2e37a3e294 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/upload.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/upload.ts @@ -1,14 +1,14 @@ import { RequestHandler } from 'express'; import { Operation } from 'express-openapi'; -import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../../constants/roles'; -import { getDBConnection, IDBConnection } from '../../../../../../../database/db'; -import { HTTP400 } from '../../../../../../../errors/http-error'; -import { authorizeRequestHandler } from '../../../../../../../request-handlers/security/authorization'; -import { SurveyService } from '../../../../../../../services/survey-service'; -import { generateS3FileKey, scanFileForVirus, uploadFileToS3 } from '../../../../../../../utils/file-utils'; -import { getLogger } from '../../../../../../../utils/logger'; +import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../../../constants/roles'; +import { getDBConnection, IDBConnection } from '../../../../../../../../database/db'; +import { HTTP400 } from '../../../../../../../../errors/http-error'; +import { authorizeRequestHandler } from '../../../../../../../../request-handlers/security/authorization'; +import { SurveyService } from '../../../../../../../../services/survey-service'; +import { generateS3FileKey, scanFileForVirus, uploadFileToS3 } from '../../../../../../../../utils/file-utils'; +import { getLogger } from '../../../../../../../../utils/logger'; -const defaultLog = getLogger('/api/project/{projectId}/survey/{surveyId}/observation/submission/upload'); +const defaultLog = getLogger('/api/project/{projectId}/survey/{surveyId}/dwca/observations/submission/upload'); export const POST: Operation = [ authorizeRequestHandler((req) => { @@ -109,7 +109,7 @@ export function uploadMedia(): RequestHandler { return async (req, res) => { const rawMediaArray: Express.Multer.File[] = req.files as Express.Multer.File[]; - if (!rawMediaArray || !rawMediaArray.length) { + if (!rawMediaArray?.length) { // no media objects included, skipping media upload step throw new HTTP400('Missing upload data'); } @@ -172,8 +172,8 @@ export function uploadMedia(): RequestHandler { const metadata = { filename: rawMediaFile.originalname, - username: (req['auth_payload'] && req['auth_payload'].preferred_username) || '', - email: (req['auth_payload'] && req['auth_payload'].email) || '' + username: req['auth_payload']?.preferred_username ?? '', + email: req['auth_payload']?.email ?? '' }; await uploadFileToS3(rawMediaFile, inputKey, metadata); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/delete.test.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/delete.test.ts similarity index 87% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/delete.test.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/delete.test.ts index d914bea946..9b77151f14 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/delete.test.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/delete.test.ts @@ -2,9 +2,9 @@ import chai, { expect } from 'chai'; import { describe } from 'mocha'; import sinon from 'sinon'; import sinonChai from 'sinon-chai'; -import * as db from '../../../../../../../../database/db'; -import { OccurrenceService } from '../../../../../../../../services/occurrence-service'; -import { getMockDBConnection } from '../../../../../../../../__mocks__/db'; +import * as db from '../../../../../../../../../database/db'; +import { OccurrenceService } from '../../../../../../../../../services/occurrence-service'; +import { getMockDBConnection } from '../../../../../../../../../__mocks__/db'; import * as delete_submission from './delete'; chai.use(sinonChai); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/delete.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/delete.ts similarity index 85% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/delete.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/delete.ts index 6beefc8c3e..e43201abce 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/delete.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/delete.ts @@ -1,12 +1,14 @@ import { RequestHandler } from 'express'; import { Operation } from 'express-openapi'; -import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../../../constants/roles'; -import { getDBConnection } from '../../../../../../../../database/db'; -import { authorizeRequestHandler } from '../../../../../../../../request-handlers/security/authorization'; -import { OccurrenceService } from '../../../../../../../../services/occurrence-service'; -import { getLogger } from '../../../../../../../../utils/logger'; +import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../../../../constants/roles'; +import { getDBConnection } from '../../../../../../../../../database/db'; +import { authorizeRequestHandler } from '../../../../../../../../../request-handlers/security/authorization'; +import { OccurrenceService } from '../../../../../../../../../services/occurrence-service'; +import { getLogger } from '../../../../../../../../../utils/logger'; -const defaultLog = getLogger('/api/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/delete'); +const defaultLog = getLogger( + '/api/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/delete' +); export const DELETE: Operation = [ authorizeRequestHandler((req) => { diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/getSignedUrl.test.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/getSignedUrl.test.ts similarity index 88% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/getSignedUrl.test.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/getSignedUrl.test.ts index 183d8a5e76..7a650f550c 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/getSignedUrl.test.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/getSignedUrl.test.ts @@ -2,12 +2,12 @@ import chai, { expect } from 'chai'; import { describe } from 'mocha'; import sinon from 'sinon'; import sinonChai from 'sinon-chai'; -import * as db from '../../../../../../../../database/db'; -import { HTTPError } from '../../../../../../../../errors/http-error'; -import { IOccurrenceSubmission } from '../../../../../../../../repositories/occurrence-repository'; -import { OccurrenceService } from '../../../../../../../../services/occurrence-service'; -import * as file_utils from '../../../../../../../../utils/file-utils'; -import { getMockDBConnection } from '../../../../../../../../__mocks__/db'; +import * as db from '../../../../../../../../../database/db'; +import { HTTPError } from '../../../../../../../../../errors/http-error'; +import { IOccurrenceSubmission } from '../../../../../../../../../repositories/occurrence-repository'; +import { OccurrenceService } from '../../../../../../../../../services/occurrence-service'; +import * as file_utils from '../../../../../../../../../utils/file-utils'; +import { getMockDBConnection } from '../../../../../../../../../__mocks__/db'; import * as get_signed_url from './getSignedUrl'; chai.use(sinonChai); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/getSignedUrl.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/getSignedUrl.ts similarity index 83% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/getSignedUrl.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/getSignedUrl.ts index 53d66b1902..b7af8ad131 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/getSignedUrl.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/getSignedUrl.ts @@ -1,16 +1,16 @@ import { RequestHandler } from 'express'; import { Operation } from 'express-openapi'; -import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../../../constants/roles'; -import { getDBConnection } from '../../../../../../../../database/db'; -import { HTTP400 } from '../../../../../../../../errors/http-error'; -import { authorizeRequestHandler } from '../../../../../../../../request-handlers/security/authorization'; -import { OccurrenceService } from '../../../../../../../../services/occurrence-service'; -import { getS3SignedURL } from '../../../../../../../../utils/file-utils'; -import { getLogger } from '../../../../../../../../utils/logger'; -import { attachmentApiDocObject } from '../../../../../../../../utils/shared-api-docs'; +import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../../../../constants/roles'; +import { getDBConnection } from '../../../../../../../../../database/db'; +import { HTTP400 } from '../../../../../../../../../errors/http-error'; +import { authorizeRequestHandler } from '../../../../../../../../../request-handlers/security/authorization'; +import { OccurrenceService } from '../../../../../../../../../services/occurrence-service'; +import { getS3SignedURL } from '../../../../../../../../../utils/file-utils'; +import { getLogger } from '../../../../../../../../../utils/logger'; +import { attachmentApiDocObject } from '../../../../../../../../../utils/shared-api-docs'; const defaultLog = getLogger( - '/api/project/{projectId}/survey/{surveyId}/observation/submission/{submissionId}/getSignedUrl' + '/api/project/{projectId}/survey/{surveyId}/dwca/observations/submission/{submissionId}/getSignedUrl' ); export const GET: Operation = [ diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/index.test.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/index.test.ts similarity index 100% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/index.test.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/observations/index.test.ts diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/index.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/index.ts similarity index 97% rename from api/src/paths/project/{projectId}/survey/{surveyId}/observation/index.ts rename to api/src/paths/project/{projectId}/survey/{surveyId}/observations/index.ts index 3a3dbd1683..43788618bf 100644 --- a/api/src/paths/project/{projectId}/survey/{surveyId}/observation/index.ts +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/index.ts @@ -52,8 +52,7 @@ export const PUT: Operation = [ insertUpdateDeleteSurveyObservations() ]; -const surveyObservationsResponseSchema: SchemaObject = { - title: 'Survey get response object, for view purposes', +export const surveyObservationsResponseSchema: SchemaObject = { type: 'object', nullable: true, required: ['surveyObservations'], @@ -159,7 +158,10 @@ GET.apiDoc = { description: 'Survey Observations get response.', content: { 'application/json': { - schema: { ...surveyObservationsResponseSchema } + schema: { + ...surveyObservationsResponseSchema, + title: 'Survey get response object, for view purposes' + } } } }, diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observations/process.test.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/process.test.ts new file mode 100644 index 0000000000..ee32fe4d0e --- /dev/null +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/process.test.ts @@ -0,0 +1,67 @@ +import chai, { expect } from 'chai'; +import { describe } from 'mocha'; +import sinon from 'sinon'; +import sinonChai from 'sinon-chai'; +import * as db from '../../../../../../database/db'; +import { HTTPError } from '../../../../../../errors/http-error'; +import { ObservationService } from '../../../../../../services/observation-service'; +import { getMockDBConnection, getRequestHandlerMocks } from '../../../../../../__mocks__/db'; +import * as process from './process'; + +chai.use(sinonChai); + +describe('processFile', () => { + afterEach(() => { + sinon.restore(); + }); + + const dbConnectionObj = getMockDBConnection(); + + const mockReq = { + keycloak_token: {}, + params: { + projectId: 1, + surveyId: 2 + }, + body: {} + } as any; + + it('should throw an error if failure occurs', async () => { + sinon.stub(db, 'getDBConnection').returns({ + ...dbConnectionObj, + systemUserId: () => { + return 20; + } + }); + + const expectedError = new Error('Error'); + sinon.stub(ObservationService.prototype, 'processObservationCsvSubmission').rejects(expectedError); + + try { + const result = process.processFile(); + + await result(mockReq, (null as unknown) as any, (null as unknown) as any); + expect.fail(); + } catch (actualError) { + expect((actualError as HTTPError).message).to.equal(expectedError.message); + } + }); + + it('should succeed with valid params', async () => { + const mockGetDBConnection = sinon.stub(db, 'getDBConnection').returns({ + ...dbConnectionObj, + systemUserId: () => { + return 20; + } + }); + sinon.stub(ObservationService.prototype, 'processObservationCsvSubmission').resolves({} as any); + const { mockReq, mockRes, mockNext } = getRequestHandlerMocks(); + const requestHandler = process.processFile(); + + await requestHandler(mockReq, mockRes, mockNext); + + expect(mockGetDBConnection.calledOnce).to.be.true; + expect(mockRes.status).to.be.calledWith(200); + expect(mockRes.json).to.be.calledWith({ surveyObservations: {} }); + }); +}); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observations/process.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/process.ts new file mode 100644 index 0000000000..a92a18df06 --- /dev/null +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/process.ts @@ -0,0 +1,120 @@ +import { RequestHandler } from 'express'; +import { Operation } from 'express-openapi'; +import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../constants/roles'; +import { getDBConnection } from '../../../../../../database/db'; +import { authorizeRequestHandler } from '../../../../../../request-handlers/security/authorization'; +import { ObservationService } from '../../../../../../services/observation-service'; +import { getLogger } from '../../../../../../utils/logger'; +import { surveyObservationsResponseSchema } from './index'; + +const defaultLog = getLogger('/api/project/{projectId}/survey/{surveyId}/observation/process'); + +export const POST: Operation = [ + authorizeRequestHandler((req) => { + return { + or: [ + { + validProjectPermissions: [PROJECT_PERMISSION.COORDINATOR, PROJECT_PERMISSION.COLLABORATOR], + projectId: Number(req.body.project_id), + discriminator: 'ProjectPermission' + }, + { + validSystemRoles: [SYSTEM_ROLE.DATA_ADMINISTRATOR], + discriminator: 'SystemRole' + } + ] + }; + }), + processFile() +]; + +POST.apiDoc = { + description: 'Processes and validates observation CSV submission', + tags: ['survey', 'observation', 'csv'], + security: [ + { + Bearer: [] + } + ], + parameters: [ + { + in: 'path', + name: 'projectId', + required: true + }, + { + in: 'path', + name: 'surveyId', + required: true + } + ], + requestBody: { + description: 'Request body', + content: { + 'application/json': { + schema: { + type: 'object', + required: ['observation_submission_id'], + properties: { + observation_submission_id: { + description: 'The ID of the submission to validate', + type: 'integer' + } + } + } + } + } + }, + responses: { + 200: { + description: 'Validation results of the observation submission', + content: { + 'application/json': { + schema: { + ...surveyObservationsResponseSchema + } + } + } + }, + 400: { + $ref: '#/components/responses/400' + }, + 401: { + $ref: '#/components/responses/401' + }, + 403: { + $ref: '#/components/responses/403' + }, + 500: { + $ref: '#/components/responses/500' + }, + default: { + $ref: '#/components/responses/default' + } + } +}; + +export function processFile(): RequestHandler { + return async (req, res) => { + const submissionId = req.body.observation_submission_id; + + const connection = getDBConnection(req['keycloak_token']); + try { + await connection.open(); + + const observationService = new ObservationService(connection); + + const response = await observationService.processObservationCsvSubmission(submissionId); + + res.status(200).json({ surveyObservations: response }); + + await connection.commit(); + } catch (error) { + defaultLog.error({ label: 'processFile', message: 'error', error }); + await connection.rollback(); + throw error; + } finally { + connection.release(); + } + }; +} diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observations/upload.test.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/upload.test.ts new file mode 100644 index 0000000000..edbca8cde4 --- /dev/null +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/upload.test.ts @@ -0,0 +1,154 @@ +import chai, { expect } from 'chai'; +import { describe } from 'mocha'; +import sinon from 'sinon'; +import sinonChai from 'sinon-chai'; +import * as db from '../../../../../../database/db'; +import { HTTPError } from '../../../../../../errors/http-error'; +import { ObservationService } from '../../../../../../services/observation-service'; +import * as file_utils from '../../../../../../utils/file-utils'; +import { getMockDBConnection } from '../../../../../../__mocks__/db'; +import * as upload from './upload'; + +chai.use(sinonChai); + +describe('uploadMedia', () => { + afterEach(() => { + sinon.restore(); + }); + + const dbConnectionObj = getMockDBConnection(); + + const mockReq = { + keycloak_token: {}, + params: { + projectId: 1, + surveyId: 2 + }, + files: [ + { + fieldname: 'media', + originalname: 'test.csv', + encoding: '7bit', + mimetype: 'text/plain', + size: 340 + } + ], + body: {} + } as any; + + it('should throw an error when files are missing', async () => { + sinon.stub(db, 'getDBConnection').returns(dbConnectionObj); + + try { + const result = upload.uploadMedia(); + + await result({ ...mockReq, files: [] }, (null as unknown) as any, (null as unknown) as any); + expect.fail(); + } catch (actualError) { + expect((actualError as HTTPError).status).to.equal(400); + expect((actualError as HTTPError).message).to.equal('Missing upload data'); + } + }); + + it('should throw an error when file format incorrect', async () => { + sinon.stub(db, 'getDBConnection').returns({ + ...dbConnectionObj, + systemUserId: () => { + return 20; + } + }); + + try { + const result = upload.uploadMedia(); + + await result( + { ...mockReq, files: [{ originalname: 'file.txt' }] }, + (null as unknown) as any, + (null as unknown) as any + ); + expect.fail(); + } catch (actualError) { + expect((actualError as HTTPError).status).to.equal(400); + expect((actualError as HTTPError).message).to.equal('Invalid file type, expected a CSV file.'); + } + }); + + it('should throw an error when file has malicious content', async () => { + sinon.stub(db, 'getDBConnection').returns({ + ...dbConnectionObj, + systemUserId: () => { + return 20; + } + }); + + sinon.stub(file_utils, 'scanFileForVirus').resolves(false); + + try { + const result = upload.uploadMedia(); + + await result(mockReq, (null as unknown) as any, (null as unknown) as any); + expect.fail(); + } catch (actualError) { + expect((actualError as HTTPError).status).to.equal(400); + expect((actualError as HTTPError).message).to.equal('Malicious content detected, upload cancelled'); + } + }); + + it('should throw an error if failure occurs', async () => { + sinon.stub(db, 'getDBConnection').returns({ + ...dbConnectionObj, + systemUserId: () => { + return 20; + } + }); + + sinon.stub(file_utils, 'scanFileForVirus').resolves(true); + + const expectedError = new Error('cannot process request'); + sinon.stub(ObservationService.prototype, 'insertSurveyObservationSubmission').rejects(expectedError); + + try { + const result = upload.uploadMedia(); + + await result(mockReq, (null as unknown) as any, (null as unknown) as any); + expect.fail(); + } catch (actualError) { + expect((actualError as HTTPError).message).to.equal(expectedError.message); + } + }); + + it('should succeed with valid params', async () => { + sinon.stub(db, 'getDBConnection').returns({ + ...dbConnectionObj, + systemUserId: () => { + return 20; + } + }); + + sinon.stub(file_utils, 'scanFileForVirus').resolves(true); + sinon.stub(file_utils, 'uploadFileToS3').resolves(); + + const expectedResponse = { submissionId: 1 }; + + let actualResult: any = null; + const sampleRes = { + status: () => { + return { + json: (response: any) => { + actualResult = response; + } + }; + } + }; + + const upsertSurveyAttachmentStub = sinon + .stub(ObservationService.prototype, 'insertSurveyObservationSubmission') + .resolves({ submission_id: 1, key: 'string' }); + + const result = upload.uploadMedia(); + + await result(mockReq, (sampleRes as unknown) as any, (null as unknown) as any); + expect(actualResult).to.eql(expectedResponse); + expect(upsertSurveyAttachmentStub).to.be.calledOnce; + }); +}); diff --git a/api/src/paths/project/{projectId}/survey/{surveyId}/observations/upload.ts b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/upload.ts new file mode 100644 index 0000000000..e238f3c640 --- /dev/null +++ b/api/src/paths/project/{projectId}/survey/{surveyId}/observations/upload.ts @@ -0,0 +1,170 @@ +import { RequestHandler } from 'express'; +import { Operation } from 'express-openapi'; +import { PROJECT_PERMISSION, SYSTEM_ROLE } from '../../../../../../constants/roles'; +import { getDBConnection } from '../../../../../../database/db'; +import { HTTP400 } from '../../../../../../errors/http-error'; +import { authorizeRequestHandler } from '../../../../../../request-handlers/security/authorization'; +import { ObservationService } from '../../../../../../services/observation-service'; +import { scanFileForVirus, uploadFileToS3 } from '../../../../../../utils/file-utils'; +import { getLogger } from '../../../../../../utils/logger'; + +const defaultLog = getLogger('/api/project/{projectId}/survey/{surveyId}/observation/upload'); + +export const POST: Operation = [ + authorizeRequestHandler((req) => { + return { + or: [ + { + validProjectPermissions: [PROJECT_PERMISSION.COORDINATOR, PROJECT_PERMISSION.COLLABORATOR], + projectId: Number(req.params.projectId), + discriminator: 'ProjectPermission' + }, + { + validSystemRoles: [SYSTEM_ROLE.DATA_ADMINISTRATOR], + discriminator: 'SystemRole' + } + ] + }; + }), + uploadMedia() +]; + +POST.apiDoc = { + description: 'Upload survey observation submission file.', + tags: ['observations'], + security: [ + { + Bearer: [] + } + ], + parameters: [ + { + in: 'path', + name: 'projectId', + required: true + }, + { + in: 'path', + name: 'surveyId', + required: true + } + ], + requestBody: { + description: 'Survey observation submission file to upload', + content: { + 'multipart/form-data': { + schema: { + type: 'object', + properties: { + media: { + description: 'A survey observation submission file.', + type: 'string', + format: 'binary' + } + } + } + } + } + }, + responses: { + 200: { + description: 'Upload OK', + content: { + 'application/json': { + schema: { + type: 'object', + properties: { + submissionId: { + type: 'number' + } + } + } + } + } + }, + 400: { + $ref: '#/components/responses/400' + }, + 401: { + $ref: '#/components/responses/401' + }, + 403: { + $ref: '#/components/responses/403' + }, + 500: { + $ref: '#/components/responses/500' + }, + default: { + $ref: '#/components/responses/default' + } + } +}; + +/** + * Uploads a media file to S3 and inserts a matching record in the `survey_observation_submission` table. + * + * @return {*} {RequestHandler} + */ +export function uploadMedia(): RequestHandler { + return async (req, res) => { + const rawMediaArray: Express.Multer.File[] = req.files as Express.Multer.File[]; + + if (!rawMediaArray?.length) { + // no media objects included, skipping media upload step + throw new HTTP400('Missing upload data'); + } + + if (rawMediaArray.length !== 1) { + // no media objects included + throw new HTTP400('Too many files uploaded, expected 1'); + } + + const connection = getDBConnection(req['keycloak_token']); + + try { + const rawMediaFile = rawMediaArray[0]; + + if (!rawMediaFile?.originalname.endsWith('.csv')) { + throw new HTTP400('Invalid file type, expected a CSV file.'); + } + + await connection.open(); + + // Scan file for viruses using ClamAV + const virusScanResult = await scanFileForVirus(rawMediaFile); + + if (!virusScanResult) { + throw new HTTP400('Malicious content detected, upload cancelled'); + } + + // Insert a new record in the `survey_observation_submission` table + const observationService = new ObservationService(connection); + const { submission_id: submissionId, key } = await observationService.insertSurveyObservationSubmission( + rawMediaFile, + Number(req.params.projectId), + Number(req.params.surveyId) + ); + + // Upload file to S3 + const metadata = { + filename: rawMediaFile.originalname, + username: req['auth_payload']?.preferred_username ?? '', + email: req['auth_payload']?.email ?? '' + }; + + const result = await uploadFileToS3(rawMediaFile, key, metadata); + + defaultLog.debug({ label: 'uploadMedia', message: 'result', result }); + + await connection.commit(); + + return res.status(200).json({ submissionId }); + } catch (error) { + defaultLog.error({ label: 'uploadMedia', message: 'error', error }); + await connection.rollback(); + throw error; + } finally { + connection.release(); + } + }; +} diff --git a/api/src/repositories/administrative-activity-repository.ts b/api/src/repositories/administrative-activity-repository.ts index 0a0dd1dd4c..cca8e70c81 100644 --- a/api/src/repositories/administrative-activity-repository.ts +++ b/api/src/repositories/administrative-activity-repository.ts @@ -5,7 +5,7 @@ import { ADMINISTRATIVE_ACTIVITY_TYPE } from '../constants/administrative-activity'; import { ApiExecuteSQLError } from '../errors/api-error'; -import { jsonSchema } from '../zod-schema/json'; +import { shallowJsonSchema } from '../zod-schema/json'; import { BaseRepository } from './base-repository'; export const IAdministrativeActivityStanding = z.object({ @@ -22,7 +22,7 @@ export const IAdministrativeActivity = z.object({ status: z.number(), status_name: z.string(), description: z.string().nullable(), - data: jsonSchema, + data: shallowJsonSchema, notes: z.string().nullable(), create_date: z.string() }); diff --git a/api/src/repositories/draft-repository.ts b/api/src/repositories/draft-repository.ts index d54373ee64..3efa134ca8 100644 --- a/api/src/repositories/draft-repository.ts +++ b/api/src/repositories/draft-repository.ts @@ -1,13 +1,13 @@ import SQL, { SQLStatement } from 'sql-template-strings'; import { z } from 'zod'; import { ApiExecuteSQLError } from '../errors/api-error'; -import { jsonSchema } from '../zod-schema/json'; +import { shallowJsonSchema } from '../zod-schema/json'; import { BaseRepository } from './base-repository'; export const WebformDraft = z.object({ webform_draft_id: z.number(), name: z.string(), - data: jsonSchema, + data: shallowJsonSchema, create_date: z.string(), update_date: z.string().nullable() }); diff --git a/api/src/repositories/observation-repository.test.ts b/api/src/repositories/observation-repository.test.ts index eff7847481..04e8f91162 100644 --- a/api/src/repositories/observation-repository.test.ts +++ b/api/src/repositories/observation-repository.test.ts @@ -135,4 +135,74 @@ describe('ObservationRepository', () => { expect(response).to.be.eql(mockRows); }); }); + + describe('insertSurveyObservationSubmission', () => { + it('inserts a survey observation submission record', async () => { + const mockQueryResponse = ({ rows: [1] } as unknown) as QueryResult; + + const mockDBConnection = getMockDBConnection({ + sql: sinon.stub().resolves(mockQueryResponse) + }); + + const surveyId = 1; + const submissionId = 2; + const key = 'key'; + const original_filename = 'originalFilename'; + + const repo = new ObservationRepository(mockDBConnection); + + const response = await repo.insertSurveyObservationSubmission(submissionId, key, surveyId, original_filename); + + expect(response).to.equal(1); + }); + }); + + describe('getNextSubmissionId', () => { + it('gets the next submission id', async () => { + const mockQueryResponse = ({ rows: [{ submission_id: 1 }], rowCount: 1 } as unknown) as QueryResult; + + const mockDBConnection = getMockDBConnection({ + sql: sinon.stub().resolves(mockQueryResponse) + }); + + const repo = new ObservationRepository(mockDBConnection); + + const response = await repo.getNextSubmissionId(); + + expect(response).to.equal(1); + }); + }); + + describe('getObservationSubmissionById', () => { + it('gets a submission by ID', async () => { + const mockQueryResponse = ({ rows: [{ submission_id: 5 }], rowCount: 1 } as unknown) as QueryResult; + + const mockDBConnection = getMockDBConnection({ + knex: sinon.stub().resolves(mockQueryResponse) + }); + + const repo = new ObservationRepository(mockDBConnection); + + const response = await repo.getObservationSubmissionById(5); + + expect(response).to.eql({ submission_id: 5 }); + }); + + it('throws an error when no submission is found', async () => { + const mockQueryResponse = ({ rows: [], rowCount: 0 } as unknown) as QueryResult; + + const mockDBConnection = getMockDBConnection({ + knex: sinon.stub().resolves(mockQueryResponse) + }); + + const repo = new ObservationRepository(mockDBConnection); + + try { + await repo.getObservationSubmissionById(5); + expect.fail(); + } catch (error) { + expect((error as Error).message).to.equal('Failed to get observation submission'); + } + }); + }); }); diff --git a/api/src/repositories/observation-repository.ts b/api/src/repositories/observation-repository.ts index 8843051a42..4052b592fd 100644 --- a/api/src/repositories/observation-repository.ts +++ b/api/src/repositories/observation-repository.ts @@ -1,6 +1,8 @@ import SQL from 'sql-template-strings'; import { z } from 'zod'; import { getKnex } from '../database/db'; +import { ApiExecuteSQLError } from '../errors/api-error'; +import { getLogger } from '../utils/logger'; import { BaseRepository } from './base-repository'; /** @@ -10,9 +12,9 @@ export const ObservationRecord = z.object({ survey_observation_id: z.number(), survey_id: z.number(), wldtaxonomic_units_id: z.number(), - survey_sample_site_id: z.number(), - survey_sample_method_id: z.number(), - survey_sample_period_id: z.number(), + survey_sample_site_id: z.number().nullable(), + survey_sample_method_id: z.number().nullable(), + survey_sample_period_id: z.number().nullable(), latitude: z.number(), longitude: z.number(), count: z.number(), @@ -61,6 +63,24 @@ export type UpdateObservation = Pick< | 'survey_sample_period_id' >; +/** + * Interface reflecting survey observations retrieved from the database + */ +export const ObservationSubmissionRecord = z.object({ + submission_id: z.number(), + survey_id: z.number(), + key: z.string(), + original_filename: z.string(), + create_date: z.string(), + create_user: z.number(), + update_date: z.string().nullable(), + update_user: z.number().nullable() +}); + +export type ObservationSubmissionRecord = z.infer; + +const defaultLog = getLogger('repositories/observation-repository'); + export class ObservationRepository extends BaseRepository { /** * Deletes all survey observation records associated with the given survey, except @@ -130,7 +150,7 @@ export class ObservationRepository extends BaseRepository { observation_time ) OVERRIDING SYSTEM VALUE - VALUES + VALUES `; sqlStatement.append( @@ -140,9 +160,9 @@ export class ObservationRepository extends BaseRepository { observation['survey_observation_id'] || 'DEFAULT', surveyId, observation.wldtaxonomic_units_id, - observation.survey_sample_site_id, - observation.survey_sample_method_id, - observation.survey_sample_period_id, + observation.survey_sample_site_id ?? 'NULL', + observation.survey_sample_method_id ?? 'NULL', + observation.survey_sample_period_id ?? 'NULL', observation.count, observation.latitude, observation.longitude, @@ -190,4 +210,75 @@ export class ObservationRepository extends BaseRepository { const response = await this.connection.knex(sqlStatement, ObservationRecord); return response.rows; } + + /** + * Inserts a survey observation submission record into the database and returns the record + * + * @param {number} submission_id + * @param {string} key + * @param {number} survey_id + * @param {string} original_filename + * @return {*} {Promise} + * @memberof ObservationRepository + */ + async insertSurveyObservationSubmission( + submission_id: number, + key: string, + survey_id: number, + original_filename: string + ): Promise { + defaultLog.debug({ label: 'insertSurveyObservationSubmission' }); + const sqlStatement = SQL` + INSERT INTO + survey_observation_submission + (submission_id, key, survey_id, original_filename) + VALUES + (${submission_id}, ${key}, ${survey_id}, ${original_filename}) + RETURNING *;`; + + const response = await this.connection.sql(sqlStatement, ObservationSubmissionRecord); + + return response.rows[0]; + } + + /** + * Retrieves the next submission ID from the survey_observation_submission_seq sequence + * + * @return {*} {Promise} + * @memberof ObservationRepository + */ + async getNextSubmissionId(): Promise { + const sqlStatement = SQL` + SELECT nextval('biohub.survey_observation_submission_id_seq')::integer as submission_id; + `; + const response = await this.connection.sql<{ submission_id: number }>(sqlStatement); + return response.rows[0].submission_id; + } + + /** + * Retrieves the observation submission record by the given submission ID. + * + * @param {number} submissionId + * @return {*} {Promise} + * @memberof ObservationService + */ + async getObservationSubmissionById(submissionId: number): Promise { + const knex = getKnex(); + const sqlStatement = knex + .queryBuilder() + .select('*') + .from('survey_observation_submission') + .where('submission_id', submissionId); + + const response = await this.connection.knex(sqlStatement, ObservationSubmissionRecord); + + if (!response.rowCount) { + throw new ApiExecuteSQLError('Failed to get observation submission', [ + 'ObservationRepository->getObservationSubmissionById', + 'rowCount was null or undefined, expected rowCount = 1' + ]); + } + + return response.rows[0]; + } } diff --git a/api/src/repositories/sample-location-repository.test.ts b/api/src/repositories/sample-location-repository.test.ts index 2b0f17de84..272c00c7d8 100644 --- a/api/src/repositories/sample-location-repository.test.ts +++ b/api/src/repositories/sample-location-repository.test.ts @@ -120,7 +120,6 @@ describe('SampleLocationRepository', () => { } catch (error) { expect(dbConnectionObj.sql).to.have.been.calledOnce; expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to insert sample location'); - expect(dbConnectionObj.sql).to.have.been.calledOnce; } }); }); @@ -151,7 +150,6 @@ describe('SampleLocationRepository', () => { } catch (error) { expect(dbConnectionObj.sql).to.have.been.calledOnce; expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to delete survey block record'); - expect(dbConnectionObj.sql).to.have.been.calledOnce; } }); }); diff --git a/api/src/repositories/sample-method-repository.test.ts b/api/src/repositories/sample-method-repository.test.ts index 67828223d3..e298f1f7a9 100644 --- a/api/src/repositories/sample-method-repository.test.ts +++ b/api/src/repositories/sample-method-repository.test.ts @@ -132,7 +132,6 @@ describe('SampleMethodRepository', () => { } catch (error) { expect(dbConnectionObj.sql).to.have.been.calledOnce; expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to insert sample method'); - expect(dbConnectionObj.sql).to.have.been.calledOnce; } }); }); @@ -163,7 +162,6 @@ describe('SampleMethodRepository', () => { } catch (error) { expect(dbConnectionObj.sql).to.have.been.calledOnce; expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to delete sample method'); - expect(dbConnectionObj.sql).to.have.been.calledOnce; } }); }); diff --git a/api/src/repositories/sample-period-repository.test.ts b/api/src/repositories/sample-period-repository.test.ts index 1b2ad3c9f3..40590eb301 100644 --- a/api/src/repositories/sample-period-repository.test.ts +++ b/api/src/repositories/sample-period-repository.test.ts @@ -116,7 +116,6 @@ describe('SamplePeriodRepository', () => { } catch (error) { expect(dbConnectionObj.sql).to.have.been.calledOnce; expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to insert sample period'); - expect(dbConnectionObj.sql).to.have.been.calledOnce; } }); }); @@ -147,7 +146,6 @@ describe('SamplePeriodRepository', () => { } catch (error) { expect(dbConnectionObj.sql).to.have.been.calledOnce; expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to delete sample period'); - expect(dbConnectionObj.sql).to.have.been.calledOnce; } }); }); diff --git a/api/src/repositories/site-selection-strategy-repository.test.ts b/api/src/repositories/site-selection-strategy-repository.test.ts new file mode 100644 index 0000000000..2b5d7cb0f3 --- /dev/null +++ b/api/src/repositories/site-selection-strategy-repository.test.ts @@ -0,0 +1,318 @@ +import chai, { expect } from 'chai'; +import { describe } from 'mocha'; +import { QueryResult } from 'pg'; +import sinon from 'sinon'; +import sinonChai from 'sinon-chai'; +import { ApiExecuteSQLError } from '../errors/api-error'; +import { getMockDBConnection } from '../__mocks__/db'; +import { + SiteSelectionStrategyRepository, + SurveyStratum, + SurveyStratumRecord +} from './site-selection-strategy-repository'; + +chai.use(sinonChai); + +describe('SiteSelectionStrategyRepository', () => { + afterEach(() => { + sinon.restore(); + }); + + describe('getSiteSelectionDataBySurveyId', () => { + it('should return non-empty data', async () => { + const mockStrategiesRows: { name: string }[] = [{ name: 'strategy1' }, { name: 'strategy2' }]; + const mockStrategiesResponse = ({ rows: mockStrategiesRows, rowCount: 2 } as any) as Promise>; + + const mockStratumsRows: SurveyStratumRecord[] = [ + { + name: 'stratum1', + description: '', + survey_id: 1, + survey_stratum_id: 2, + revision_count: 0, + update_date: '2023-05-20' + }, + { + name: 'stratum2', + description: '', + survey_id: 1, + survey_stratum_id: 2, + revision_count: 0, + update_date: '2023-05-20' + } + ]; + const mockStratumsResponse = ({ rows: mockStratumsRows, rowCount: 2 } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ + knex: sinon.stub().onFirstCall().resolves(mockStrategiesResponse).onSecondCall().resolves(mockStratumsResponse) + }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + + const response = await repo.getSiteSelectionDataBySurveyId(surveyId); + + expect(dbConnectionObj.knex).to.have.been.calledTwice; + expect(response).to.eql({ strategies: ['strategy1', 'strategy2'], stratums: mockStratumsRows }); + }); + + it('should return empty data', async () => { + const mockStrategiesRows: { name: string }[] = []; + const mockStrategiesResponse = ({ rows: mockStrategiesRows, rowCount: 0 } as any) as Promise>; + + const mockStratumsRows: SurveyStratumRecord[] = []; + const mockStratumsResponse = ({ rows: mockStratumsRows, rowCount: 0 } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ + knex: sinon.stub().onFirstCall().resolves(mockStrategiesResponse).onSecondCall().resolves(mockStratumsResponse) + }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + + const response = await repo.getSiteSelectionDataBySurveyId(surveyId); + + expect(dbConnectionObj.knex).to.have.been.calledTwice; + expect(response).to.eql({ strategies: [], stratums: mockStratumsRows }); + }); + }); + + describe('deleteSurveySiteSelectionStrategies', () => { + it('should return non-zero rowCount', async () => { + const mockRows: any[] = [{}]; + const rowCount = 1; + const mockResponse = ({ rows: mockRows, rowCount: rowCount } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + + const response = await repo.deleteSurveySiteSelectionStrategies(surveyId); + + expect(dbConnectionObj.sql).to.have.been.calledOnce; + expect(response).to.equal(rowCount); + }); + + it('should return zero rowCount', async () => { + const mockRows: any[] = []; + const rowCount = 0; + const mockResponse = ({ rows: mockRows, rowCount: rowCount } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + + const response = await repo.deleteSurveySiteSelectionStrategies(surveyId); + + expect(dbConnectionObj.sql).to.have.been.calledOnce; + expect(response).to.equal(rowCount); + }); + }); + + describe('insertSurveySiteSelectionStrategies', () => { + it('should insert a record and return a single row', async () => { + const mockRows: any[] = [{}, {}]; + const mockResponse = ({ rows: mockRows, rowCount: 2 } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + const strategies: string[] = ['strategy1', 'strategy2']; + + const response = await repo.insertSurveySiteSelectionStrategies(surveyId, strategies); + + expect(dbConnectionObj.sql).to.have.been.calledOnce; + expect(response).to.be.undefined; + }); + + it('throws an error if rowCount does not equal strategies length', async () => { + const mockRows: any[] = [{}]; + const mockResponse = ({ rows: mockRows, rowCount: 1 } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + + // strategies length = 2, rowCount = 1 + const strategies: string[] = ['strategy1', 'strategy2']; + + try { + await repo.insertSurveySiteSelectionStrategies(surveyId, strategies); + } catch (error) { + expect(dbConnectionObj.sql).to.have.been.calledOnce; + expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to insert survey site selection strategies'); + } + }); + }); + + describe('deleteSurveyStratums', () => { + it('should delete records and return non-zero rowCount', async () => { + const mockRows: any[] = []; + const rowCount = 3; + const mockResponse = ({ rows: mockRows, rowCount: rowCount } as any) as Promise>; + const dbConnectionObj = getMockDBConnection({ knex: sinon.stub().resolves(mockResponse) }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const stratumIds = [1, 2, 3]; + + const response = await repo.deleteSurveyStratums(stratumIds); + + expect(dbConnectionObj.knex).to.have.been.calledOnce; + expect(response).to.eql(rowCount); + }); + + it('should delete records and return zero rowCount', async () => { + const mockRows: any[] = []; + const rowCount = 0; + const mockResponse = ({ rows: mockRows, rowCount: rowCount } as any) as Promise>; + const dbConnectionObj = getMockDBConnection({ knex: sinon.stub().resolves(mockResponse) }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const stratumIds: number[] = []; + + const response = await repo.deleteSurveyStratums(stratumIds); + + expect(dbConnectionObj.knex).to.have.been.calledOnce; + expect(response).to.eql(rowCount); + }); + }); + + describe('insertSurveyStratums', () => { + it('should insert records and return rows', async () => { + const mockRows: any[] = [{}, {}]; + const mockResponse = ({ rows: mockRows, rowCount: 2 } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ knex: sinon.stub().resolves(mockResponse) }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + const stratums: SurveyStratum[] = [ + { name: 'stratum1', description: '' }, + { name: 'stratum2', description: '' } + ]; + + const response = await repo.insertSurveyStratums(surveyId, stratums); + + expect(dbConnectionObj.knex).to.have.been.calledOnce; + expect(response).to.eql(mockRows); + }); + + it('throws an error if rowCount does not equal stratums length', async () => { + const mockRows: any[] = [{}]; + const rowCount = 1; + const mockResponse = ({ rows: mockRows, rowCount: rowCount } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ knex: sinon.stub().resolves(mockResponse) }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + + // stratums length = 2, rowCount = 1 + const stratums: SurveyStratum[] = [ + { name: 'stratum1', description: '' }, + { name: 'stratum2', description: '' } + ]; + + try { + await repo.insertSurveyStratums(surveyId, stratums); + } catch (error) { + expect(dbConnectionObj.knex).to.have.been.calledOnce; + expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to insert survey stratums'); + } + }); + }); + + describe('updateSurveyStratums', () => { + it('should insert records and return rows', async () => { + const mockRows1: SurveyStratumRecord[] = [ + { + name: 'stratum1', + description: '', + survey_id: 1, + survey_stratum_id: 1, + revision_count: 1, + update_date: '2023-10-23' + } + ]; + const mockRows2: SurveyStratumRecord[] = [ + { + name: 'stratum1', + description: '', + survey_id: 1, + survey_stratum_id: 2, + revision_count: 1, + update_date: '2023-10-23' + } + ]; + const mockResponse1 = ({ rows: mockRows1, rowCount: 1 } as any) as Promise>; + const mockResponse2 = ({ rows: mockRows2, rowCount: 1 } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ + knex: sinon.stub().onFirstCall().resolves(mockResponse1).onSecondCall().resolves(mockResponse2) + }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + const stratums: SurveyStratumRecord[] = [ + { name: 'stratum1', description: '', survey_id: 1, survey_stratum_id: 1, revision_count: 0, update_date: null }, + { name: 'stratum1', description: '', survey_id: 1, survey_stratum_id: 2, revision_count: 0, update_date: null } + ]; + + const response = await repo.updateSurveyStratums(surveyId, stratums); + + expect(dbConnectionObj.knex).to.have.been.calledTwice; + expect(response).to.eql([...mockRows1, ...mockRows2]); + }); + + it('throws an error if rowCount does not equal stratums length', async () => { + const mockRows1: SurveyStratumRecord[] = [ + { + name: 'stratum1', + description: '', + survey_id: 1, + survey_stratum_id: 1, + revision_count: 1, + update_date: '2023-10-23' + } + ]; + const mockResponse1 = ({ rows: mockRows1, rowCount: 1 } as any) as Promise>; + const mockResponse2 = ({ rows: [], rowCount: 0 } as any) as Promise>; + + const dbConnectionObj = getMockDBConnection({ + knex: sinon.stub().onFirstCall().resolves(mockResponse1).onSecondCall().resolves(mockResponse2) + }); + + const repo = new SiteSelectionStrategyRepository(dbConnectionObj); + + const surveyId = 1; + + // stratums length = 2, total rowCount = 1 + const stratums: SurveyStratumRecord[] = [ + { name: 'stratum1', description: '', survey_id: 1, survey_stratum_id: 1, revision_count: 0, update_date: null }, + { name: 'stratum1', description: '', survey_id: 1, survey_stratum_id: 2, revision_count: 0, update_date: null } + ]; + + try { + await repo.updateSurveyStratums(surveyId, stratums); + } catch (error) { + expect(dbConnectionObj.knex).to.have.been.calledTwice; + expect((error as ApiExecuteSQLError).message).to.be.eql('Failed to update survey stratums'); + } + }); + }); +}); diff --git a/api/src/repositories/site-selection-strategy-repository.ts b/api/src/repositories/site-selection-strategy-repository.ts index f0d5443105..f3a0dc05a0 100644 --- a/api/src/repositories/site-selection-strategy-repository.ts +++ b/api/src/repositories/site-selection-strategy-repository.ts @@ -10,6 +10,8 @@ export const SurveyStratum = z.object({ description: z.string() }); +export type SurveyStratum = z.infer; + export const SurveyStratumRecord = z.object({ name: z.string(), description: z.string().nullable(), @@ -21,8 +23,6 @@ export const SurveyStratumRecord = z.object({ export type SurveyStratumRecord = z.infer; -export type SurveyStratum = z.infer; - export const SiteSelectionData = z.object({ strategies: z.array(z.string()), stratums: z.array(SurveyStratumRecord) @@ -56,12 +56,15 @@ export class SiteSelectionStrategyRepository extends BaseRepository { .where('sss.survey_id', surveyId) .leftJoin('site_strategy as ss', 'ss.site_strategy_id', 'sss.site_strategy_id'); - const strategiesResponse = await this.connection.knex<{ name: string }>(strategiesQuery); - const strategies = strategiesResponse.rows.map((row) => row.name); - const stratumsQuery = getKnex().select().from('survey_stratum').where('survey_id', surveyId); - const stratumsResponse = await this.connection.knex(stratumsQuery); + const [strategiesResponse, stratumsResponse] = await Promise.all([ + this.connection.knex(strategiesQuery, z.object({ name: z.string() })), + this.connection.knex(stratumsQuery, SurveyStratumRecord) + ]); + + const strategies = strategiesResponse.rows.map((row) => row.name); + const stratums = stratumsResponse.rows; return { strategies, stratums }; @@ -81,7 +84,7 @@ export class SiteSelectionStrategyRepository extends BaseRepository { DELETE FROM survey_site_strategy WHERE - survey_id = ${surveyId} + survey_id = ${surveyId} RETURNING *; `; @@ -151,10 +154,10 @@ export class SiteSelectionStrategyRepository extends BaseRepository { * Deletes the given survey stratums by ID * * @param {number[]} stratumIds - * @return {*} {Promise} + * @return {*} {Promise} * @memberof SurveyRepository */ - async deleteSurveyStratums(stratumIds: number[]): Promise { + async deleteSurveyStratums(stratumIds: number[]): Promise { defaultLog.debug({ label: 'deleteSurveyStratums', stratumIds }); const deleteQuery = getKnex() @@ -163,7 +166,9 @@ export class SiteSelectionStrategyRepository extends BaseRepository { .whereIn('survey_stratum_id', stratumIds) .returning('*'); - await this.connection.knex(deleteQuery, SurveyStratumRecord); + const response = await this.connection.knex(deleteQuery, SurveyStratumRecord); + + return response.rowCount; } /** @@ -228,17 +233,17 @@ export class SiteSelectionStrategyRepository extends BaseRepository { stratums.map((stratum) => this.connection.knex(makeUpdateQuery(stratum), SurveyStratumRecord)) ); - const records = responses.reduce((acc: SurveyStratumRecord[], queryResult) => { - return [...acc, ...queryResult.rows]; - }, []); + const totalRowCount = responses.reduce((sum, response) => sum + response.rowCount, 0); - if (records.length !== stratums.length) { + if (totalRowCount !== stratums.length) { throw new ApiExecuteSQLError('Failed to update survey stratums', [ 'SurveyRepository->updateSurveyStratums', - `Total rowCount was ${records.length}, expected ${stratums.length} rows` + `Total rowCount was ${totalRowCount}, expected ${stratums.length} rows` ]); } - return records; + return responses.reduce((acc: SurveyStratumRecord[], queryResult) => { + return [...acc, ...queryResult.rows]; + }, []); } } diff --git a/api/src/repositories/survey-location-repository.test.ts b/api/src/repositories/survey-location-repository.test.ts new file mode 100644 index 0000000000..ff04763a3f --- /dev/null +++ b/api/src/repositories/survey-location-repository.test.ts @@ -0,0 +1,119 @@ +import chai, { expect } from 'chai'; +import { QueryResult } from 'pg'; +import sinon from 'sinon'; +import sinonChai from 'sinon-chai'; +import { PostSurveyLocationData } from '../models/survey-update'; +import { getMockDBConnection } from '../__mocks__/db'; +import { SurveyLocationRepository } from './survey-location-repository'; + +chai.use(sinonChai); + +describe('SurveyLocationRepository', () => { + afterEach(() => { + sinon.restore(); + }); + + describe('insertSurveyLocation', () => { + it('should insert a survey location', async () => { + const mockResponse = ({ rows: [], rowCount: 0 } as any) as Promise>; + const dbConnection = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repository = new SurveyLocationRepository(dbConnection); + + const dataObj = { + survey_location_id: 1, + name: 'Updated Test Location', + description: 'Updated Test Description', + geojson: [ + { + type: 'Feature', + geometry: { + type: 'Point', + coordinates: [1, 1] + }, + properties: {} + } + ], + revision_count: 2 + }; + + const data = new PostSurveyLocationData(dataObj); + + await repository.insertSurveyLocation(1, data); + expect(dbConnection.sql).to.have.been.calledOnce; + }); + }); + + describe('updateSurveyLocation', () => { + it('should update a survey location', async () => { + const mockResponse = ({ rows: [], rowCount: 0 } as any) as Promise>; + const dbConnection = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repository = new SurveyLocationRepository(dbConnection); + + const dataObj = { + survey_location_id: 1, + name: 'Updated Test Location', + description: 'Updated Test Description', + geojson: [ + { + type: 'Feature', + geometry: { + type: 'Point', + coordinates: [1, 1] + }, + properties: {} + } + ], + revision_count: 2 + }; + + const data = new PostSurveyLocationData(dataObj); + + await repository.updateSurveyLocation(data); + expect(dbConnection.sql).to.have.been.calledOnce; + }); + }); + + describe('getSurveyLocationsData', () => { + it('should return a list of survey locations', async () => { + const mockSurveyLocation = { survey_location_id: 1, name: 'Test Location', description: 'Test Description' }; + const mockResponse = ({ rows: [mockSurveyLocation], rowCount: 1 } as any) as Promise>; + const dbConnection = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repository = new SurveyLocationRepository(dbConnection); + + const response = await repository.getSurveyLocationsData(1); + + expect(response).to.eql([mockSurveyLocation]); + expect(dbConnection.sql).to.have.been.calledOnce; + }); + }); + + describe('deleteSurveyLocation', () => { + it('should delete a survey location', async () => { + const mockSurveyLocation = { survey_location_id: 1, name: 'Test Location', description: 'Test Description' }; + const mockResponse = ({ rows: [mockSurveyLocation], rowCount: 1 } as any) as Promise>; + const dbConnection = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repository = new SurveyLocationRepository(dbConnection); + const response = await repository.deleteSurveyLocation(1); + + expect(response).to.eql(mockSurveyLocation); + expect(dbConnection.sql).to.have.been.calledOnce; + }); + + it('should throw an error when unable to delete the survey location', async () => { + const mockResponse = ({ rows: [], rowCount: 0 } as any) as Promise>; + const dbConnection = getMockDBConnection({ sql: sinon.stub().resolves(mockResponse) }); + + const repository = new SurveyLocationRepository(dbConnection); + + try { + await repository.deleteSurveyLocation(1); + } catch (error) { + expect(error).to.exist; + } + }); + }); +}); diff --git a/api/src/repositories/survey-location-repository.ts b/api/src/repositories/survey-location-repository.ts index 67616bb327..8445c55d99 100644 --- a/api/src/repositories/survey-location-repository.ts +++ b/api/src/repositories/survey-location-repository.ts @@ -1,9 +1,9 @@ import SQL from 'sql-template-strings'; import { z } from 'zod'; -import { PostLocationData } from '../models/survey-create'; -import { PutSurveyLocationData } from '../models/survey-update'; +import { ApiExecuteSQLError } from '../errors/api-error'; +import { PostSurveyLocationData } from '../models/survey-update'; import { generateGeometryCollectionSQL } from '../utils/spatial-utils'; -import { jsonSchema } from '../zod-schema/json'; +import { shallowJsonSchema } from '../zod-schema/json'; import { BaseRepository } from './base-repository'; export const SurveyLocationRecord = z.object({ @@ -12,7 +12,7 @@ export const SurveyLocationRecord = z.object({ description: z.string(), geometry: z.record(z.any()).nullable(), geography: z.string(), - geojson: jsonSchema, + geojson: shallowJsonSchema, revision_count: z.number() }); @@ -22,10 +22,10 @@ export class SurveyLocationRepository extends BaseRepository { * Creates a survey location for a given survey * * @param {number} surveyId - * @param {PostLocationData} data + * @param {PostSurveyLocationData} data * @memberof SurveyLocationRepository */ - async insertSurveyLocation(surveyId: number, data: PostLocationData): Promise { + async insertSurveyLocation(surveyId: number, data: PostSurveyLocationData): Promise { const sqlStatement = SQL` INSERT INTO survey_location ( survey_id, @@ -51,10 +51,10 @@ export class SurveyLocationRepository extends BaseRepository { /** * Updates survey location data * - * @param {PutSurveyLocationData} data + * @param {PostSurveyLocationData} data * @memberof SurveyLocationRepository */ - async updateSurveyLocation(data: PutSurveyLocationData): Promise { + async updateSurveyLocation(data: PostSurveyLocationData): Promise { const sqlStatement = SQL` UPDATE survey_location @@ -94,4 +94,26 @@ export class SurveyLocationRepository extends BaseRepository { const response = await this.connection.sql(sqlStatement, SurveyLocationRecord); return response.rows; } + + /** + * Deletes a survey location for a given survey location id + * + * @param surveyLocationId + * @returns {*} Promise + * @memberof SurveyLocationRepository + */ + async deleteSurveyLocation(surveyLocationId: number): Promise { + const sql = SQL` + DELETE FROM survey_location WHERE survey_location_id = ${surveyLocationId} RETURNING *;`; + const response = await this.connection.sql(sql, SurveyLocationRecord); + + if (!response?.rowCount) { + throw new ApiExecuteSQLError('Failed to delete survey location record', [ + 'SurveyLocationRepository->deleteSurveyLocation', + 'rows was null or undefined, expected rows != null' + ]); + } + + return response.rows[0]; + } } diff --git a/api/src/services/observation-service.test.ts b/api/src/services/observation-service.test.ts index 58ce16e23f..51ff8a838f 100644 --- a/api/src/services/observation-service.test.ts +++ b/api/src/services/observation-service.test.ts @@ -7,6 +7,7 @@ import { ObservationRepository, UpdateObservation } from '../repositories/observation-repository'; +import * as file_utils from '../utils/file-utils'; import { getMockDBConnection } from '../__mocks__/db'; import { ObservationService } from './observation-service'; @@ -163,4 +164,51 @@ describe('ObservationService', () => { expect(response).to.eql(mockGetResponse); }); }); + + describe('insertSurveyObservationSubmission', () => { + it('Inserts a survey observation submission record into the database', async () => { + const mockDBConnection = getMockDBConnection(); + const submission_id = 1; + const key = 'key'; + const survey_id = 1; + const original_filename = 'originalFilename'; + const mockFile = { originalname: original_filename } as Express.Multer.File; + const projectId = 1; + + const mockInsertResponse = { + submission_id, + key, + survey_id, + original_filename, + create_date: '2023-04-04', + create_user: 1, + update_date: null, + update_user: null + }; + const getNextSubmissionIdStub = sinon + .stub(ObservationRepository.prototype, 'getNextSubmissionId') + .resolves(submission_id); + const generateS3FileKeyStub = sinon.stub(file_utils, 'generateS3FileKey').returns(key); + const insertSurveyObservationSubmissionStub = sinon + .stub(ObservationRepository.prototype, 'insertSurveyObservationSubmission') + .resolves(mockInsertResponse); + + const observationService = new ObservationService(mockDBConnection); + + const response = await observationService.insertSurveyObservationSubmission(mockFile, projectId, survey_id); + + expect(getNextSubmissionIdStub).to.be.calledOnce; + expect(generateS3FileKeyStub).to.be.calledOnce; + expect(insertSurveyObservationSubmissionStub).to.be.calledOnceWith( + submission_id, + key, + survey_id, + original_filename + ); + expect(response).to.eql({ + submission_id, + key + }); + }); + }); }); diff --git a/api/src/services/observation-service.ts b/api/src/services/observation-service.ts index dc68a6bf2b..04b0995d72 100644 --- a/api/src/services/observation-service.ts +++ b/api/src/services/observation-service.ts @@ -1,12 +1,35 @@ +import xlsx from 'xlsx'; import { IDBConnection } from '../database/db'; import { InsertObservation, ObservationRecord, ObservationRepository, + ObservationSubmissionRecord, UpdateObservation } from '../repositories/observation-repository'; +import { generateS3FileKey, getFileFromS3 } from '../utils/file-utils'; +import { getLogger } from '../utils/logger'; +import { parseS3File } from '../utils/media/media-utils'; +import { + constructWorksheets, + constructXLSXWorkbook, + getWorksheetRowObjects, + validateWorksheetColumnTypes, + validateWorksheetHeaders +} from '../utils/xlsx-utils/worksheet-utils'; import { DBService } from './db-service'; +const defaultLog = getLogger('services/observation-service'); + +export interface IXLSXCSVValidator { + columnNames: string[]; + columnTypes: string[]; +} + +const observationCSVColumnValidator = { + columnNames: ['SPECIES_TAXONOMIC_ID', 'COUNT', 'DATE', 'TIME', 'LATITUDE', 'LONGITUDE'], + columnTypes: ['number', 'number', 'date', 'string', 'number', 'number'] +}; export class ObservationService extends DBService { observationRepository: ObservationRepository; @@ -15,6 +38,27 @@ export class ObservationService extends DBService { this.observationRepository = new ObservationRepository(connection); } + /** + * Validates the given CSV file against the given column validator + * + * @param {MediaFile} file + * @return {*} {boolean} + * @memberof ObservationService + */ + validateCsvFile(xlsxWorksheets: xlsx.WorkSheet, columnValidator: IXLSXCSVValidator): boolean { + // Validate the worksheet headers + if (!validateWorksheetHeaders(xlsxWorksheets['Sheet1'], columnValidator.columnNames)) { + return false; + } + + // Validate the worksheet column types + if (!validateWorksheetColumnTypes(xlsxWorksheets['Sheet1'], columnValidator.columnTypes)) { + return false; + } + + return true; + } + /** * Performs an upsert for all observation records belonging to the given survey, while removing * any records associated for the survey that aren't included in the given records, then @@ -50,4 +94,107 @@ export class ObservationService extends DBService { async getSurveyObservations(surveyId: number): Promise { return this.observationRepository.getSurveyObservations(surveyId); } + + /** + * Inserts a survey observation submission record into the database and returns the key + * + * @param {Express.Multer.File} file + * @param {number} projectId + * @param {number} surveyId + * @return {*} {Promise<{ key: string }>} + * @memberof ObservationService + */ + async insertSurveyObservationSubmission( + file: Express.Multer.File, + projectId: number, + surveyId: number + ): Promise<{ submission_id: number; key: string }> { + const submissionId = await this.observationRepository.getNextSubmissionId(); + + const key = generateS3FileKey({ + projectId, + surveyId, + submissionId, + fileName: file.originalname + }); + + const insertResult = await this.observationRepository.insertSurveyObservationSubmission( + submissionId, + key, + surveyId, + file.originalname + ); + + return { submission_id: insertResult.submission_id, key }; + } + + /** + * Retrieves the observation submission record by the given submission ID. + * + * @param {number} submissionId + * @return {*} {Promise} + * @memberof ObservationService + */ + async getObservationSubmissionById(submissionId: number): Promise { + return this.observationRepository.getObservationSubmissionById(submissionId); + } + + /** + * Processes a observation upload submission. This method receives an ID belonging to an + * observation submission, gets the CSV file associated with the submission, and appends + * all of the records in the CSV file to the observations for the survey. If the CSV + * file fails validation, this method fails. + * + * @param {number} submissionId + * @return {*} {Promise} + * @memberof ObservationService + */ + async processObservationCsvSubmission(submissionId: number): Promise { + defaultLog.debug({ label: 'processObservationCsvSubmission', submissionId }); + + // Step 1. Retrieve the observation submission record + const submission = await this.getObservationSubmissionById(submissionId); + const surveyId = submission.survey_id; + + // Step 2. Retrieve the S3 object containing the uploaded CSV file + const s3Object = await getFileFromS3(submission.key); + + // Step 3. Get the contents of the S3 object + const mediaFile = parseS3File(s3Object); + + // Step 4. Validate the CSV file + if (mediaFile.mimetype !== 'text/csv') { + throw new Error('Failed to process file for importing observations. Invalid CSV file.'); + } + + // Construct the XLSX workbook + const xlsxWorkBook = constructXLSXWorkbook(mediaFile); + + // Construct the worksheets + const xlsxWorksheets = constructWorksheets(xlsxWorkBook); + + if (!this.validateCsvFile(xlsxWorksheets, observationCSVColumnValidator)) { + throw new Error('Failed to process file for importing observations. Invalid CSV file.'); + } + + // Get the worksheet row objects + const worksheetRowObjects = getWorksheetRowObjects(xlsxWorksheets['Sheet1']); + + // Step 5. Merge all the table rows into an array of ObservationInsert[] + const insertRows: InsertObservation[] = worksheetRowObjects.map((row) => ({ + survey_id: surveyId, + wldtaxonomic_units_id: row['SPECIES_TAXONOMIC_ID'], + survey_sample_site_id: null, + survey_sample_method_id: null, + survey_sample_period_id: null, + latitude: row['LATITUDE'], + longitude: row['LONGITUDE'], + count: row['COUNT'], + observation_time: row['TIME'], + observation_date: row['DATE'] + })); + + // Step 6. Insert new rows and return them + return this.observationRepository.insertUpdateSurveyObservations(surveyId, insertRows); + } } diff --git a/api/src/services/survey-location-service.test.ts b/api/src/services/survey-location-service.test.ts new file mode 100644 index 0000000000..b6d1cbf5cd --- /dev/null +++ b/api/src/services/survey-location-service.test.ts @@ -0,0 +1,94 @@ +import chai, { expect } from 'chai'; +import sinon from 'sinon'; +import sinonChai from 'sinon-chai'; +import { PostSurveyLocationData } from '../models/survey-update'; +import { SurveyLocationRecord, SurveyLocationRepository } from '../repositories/survey-location-repository'; +import { getMockDBConnection } from '../__mocks__/db'; +import { SurveyLocationService } from './survey-location-service'; + +chai.use(sinonChai); + +describe('SurveyLocationService', () => { + afterEach(() => { + sinon.restore(); + }); + + const dataObj = { + survey_location_id: 1, + name: 'Updated Test Location', + description: 'Updated Test Description', + geojson: [ + { + type: 'Feature', + geometry: { + type: 'Point', + coordinates: [1, 1] + }, + properties: {} + } + ], + revision_count: 2 + }; + + const data = new PostSurveyLocationData(dataObj); + + describe('insertSurveyLocation', () => { + it('inserts survey location and returns void', async () => { + const dbConnection = getMockDBConnection(); + const service = new SurveyLocationService(dbConnection); + + const repoStub = sinon.stub(SurveyLocationRepository.prototype, 'insertSurveyLocation').resolves(); + + const response = await service.insertSurveyLocation(1, data); + + expect(repoStub).to.be.calledOnce; + expect(response).to.be.undefined; + }); + }); + + describe('updateSurveyLocation', () => { + it('updates survey location and returns void', async () => { + const dbConnection = getMockDBConnection(); + const service = new SurveyLocationService(dbConnection); + + const repoStub = sinon.stub(SurveyLocationRepository.prototype, 'updateSurveyLocation').resolves(); + + const response = await service.updateSurveyLocation(data); + + expect(repoStub).to.be.calledOnce; + expect(response).to.be.undefined; + }); + }); + + describe('getSurveyLocationsData', () => { + it('returns list of survey locations', async () => { + const dbConnection = getMockDBConnection(); + const service = new SurveyLocationService(dbConnection); + + const repoStub = sinon + .stub(SurveyLocationRepository.prototype, 'getSurveyLocationsData') + .resolves([{} as SurveyLocationRecord]); + + const response = await service.getSurveyLocationsData(1); + + expect(repoStub).to.be.calledOnce; + expect(response).to.eql([{}]); + }); + }); + + describe('deleteSurveyLocation', () => { + it('deletes survey location and returns record', async () => { + const dbConnection = getMockDBConnection(); + const service = new SurveyLocationService(dbConnection); + + const repoStub = sinon + .stub(SurveyLocationRepository.prototype, 'deleteSurveyLocation') + .resolves({} as SurveyLocationRecord); + + const response = await service.deleteSurveyLocation(1); + + expect(repoStub).to.be.calledOnce; + expect(response).to.eql({}); + }); + }); +}); diff --git a/api/src/services/survey-location-service.ts b/api/src/services/survey-location-service.ts index 296794a042..5de35c1a19 100644 --- a/api/src/services/survey-location-service.ts +++ b/api/src/services/survey-location-service.ts @@ -1,6 +1,5 @@ import { IDBConnection } from '../database/db'; -import { PostLocationData } from '../models/survey-create'; -import { PutSurveyLocationData } from '../models/survey-update'; +import { PostSurveyLocationData } from '../models/survey-update'; import { SurveyLocationRecord, SurveyLocationRepository } from '../repositories/survey-location-repository'; import { DBService } from './db-service'; @@ -30,22 +29,22 @@ export class SurveyLocationService extends DBService { * Insert a new survey location record. * * @param {number} surveyId - * @param {PostLocationData} data + * @param {PostSurveyLocationData} data * @return {*} {Promise} * @memberof SurveyLocationService */ - async insertSurveyLocation(surveyId: number, data: PostLocationData): Promise { + async insertSurveyLocation(surveyId: number, data: PostSurveyLocationData): Promise { return this.surveyLocationRepository.insertSurveyLocation(surveyId, data); } /** * Update an existing survey location record. * - * @param {PutSurveyLocationData} data + * @param {PostSurveyLocationData} data * @return {*} {Promise} * @memberof SurveyLocationService */ - async updateSurveyLocation(data: PutSurveyLocationData): Promise { + async updateSurveyLocation(data: PostSurveyLocationData): Promise { return this.surveyLocationRepository.updateSurveyLocation(data); } /** @@ -58,4 +57,15 @@ export class SurveyLocationService extends DBService { async getSurveyLocationsData(surveyId: number): Promise { return this.surveyLocationRepository.getSurveyLocationsData(surveyId); } + + /** + * Deletes a survey location for a given survey location id + * + * @param surveyLocationId + * @returns {*} Promise + * @memberof SurveyLocationService + */ + async deleteSurveyLocation(surveyLocationId: number): Promise { + return this.surveyLocationRepository.deleteSurveyLocation(surveyLocationId); + } } diff --git a/api/src/services/survey-service.test.ts b/api/src/services/survey-service.test.ts index c076835879..3ba2b3cf0b 100644 --- a/api/src/services/survey-service.test.ts +++ b/api/src/services/survey-service.test.ts @@ -7,7 +7,7 @@ import { MESSAGE_CLASS_NAME, SUBMISSION_MESSAGE_TYPE, SUBMISSION_STATUS_TYPE } f import { ApiExecuteSQLError, ApiGeneralError } from '../errors/api-error'; import { GetReportAttachmentsData } from '../models/project-view'; import { PostProprietorData, PostSurveyObject } from '../models/survey-create'; -import { PutSurveyObject, PutSurveyPermitData } from '../models/survey-update'; +import { PostSurveyLocationData, PutSurveyObject, PutSurveyPermitData } from '../models/survey-update'; import { GetAncillarySpeciesData, GetAttachmentsData, @@ -35,6 +35,7 @@ import { PermitService } from './permit-service'; import { PlatformService } from './platform-service'; import { SiteSelectionStrategyService } from './site-selection-strategy-service'; import { SurveyBlockService } from './survey-block-service'; +import { SurveyLocationService } from './survey-location-service'; import { SurveyParticipationService } from './survey-participation-service'; import { SurveyService } from './survey-service'; import { TaxonomyService } from './taxonomy-service'; @@ -149,6 +150,9 @@ describe('SurveyService', () => { const updateSurveyStratumsStub = sinon .stub(SiteSelectionStrategyService.prototype, 'updateSurveyStratums') .resolves(); + const insertUpdateDeleteSurveyLocationStub = sinon + .stub(SurveyService.prototype, 'insertUpdateDeleteSurveyLocation') + .resolves(); const surveyService = new SurveyService(dbConnectionObj); @@ -166,6 +170,7 @@ describe('SurveyService', () => { expect(insertRegionStub).not.to.have.been.called; expect(upsertSurveyParticipantDataStub).not.to.have.been.called; expect(updateSurveyStratumsStub).not.to.have.been.called; + expect(insertUpdateDeleteSurveyLocationStub).not.to.have.been.called; }); it('updates everything when all data provided', async () => { @@ -194,6 +199,9 @@ describe('SurveyService', () => { const replaceSiteStrategiesStub = sinon .stub(SiteSelectionStrategyService.prototype, 'replaceSurveySiteSelectionStrategies') .resolves(); + const insertUpdateDeleteSurveyLocationStub = sinon + .stub(SurveyService.prototype, 'insertUpdateDeleteSurveyLocation') + .resolves(); const surveyService = new SurveyService(dbConnectionObj); @@ -205,7 +213,7 @@ describe('SurveyService', () => { funding_sources: [{}], proprietor: {}, purpose_and_methodology: {}, - locations: [], + locations: [{}], participants: [{}], site_selection: { stratums: [], strategies: [] }, blocks: [{}] @@ -224,6 +232,7 @@ describe('SurveyService', () => { expect(upsertBlocks).to.have.been.calledOnce; expect(replaceSurveyStratumsStub).to.have.been.calledOnce; expect(replaceSiteStrategiesStub).to.have.been.calledOnce; + expect(insertUpdateDeleteSurveyLocationStub).to.have.been.calledOnce; }); }); @@ -1347,6 +1356,82 @@ describe('SurveyService', () => { expect(response).to.eql(PublishStatus.UNSUBMITTED); }); }); + + describe('insertUpdateDeleteSurveyLocation', () => { + afterEach(() => { + sinon.restore(); + }); + + it('passes correct data to insert, update, and delete methods', async () => { + const dbConnection = getMockDBConnection(); + const service = new SurveyService(dbConnection); + const existingLocations = [ + { survey_location_id: 30, name: 'Location 1' }, + { survey_location_id: 31, name: 'Location 2' } + ] as SurveyLocationRecord[]; + + const getSurveyLocationsDataStub = sinon.stub(service, 'getSurveyLocationsData').resolves(existingLocations); + + const inputData = [ + { survey_location_id: 30, name: 'Updated Location 1' }, + { name: 'New Location' } + ] as PostSurveyLocationData[]; + + const insertSurveyLocationsStub = sinon.stub(service, 'insertSurveyLocations').resolves(); + const updateSurveyLocationStub = sinon.stub(service, 'updateSurveyLocation').resolves(); + const deleteSurveyLocationStub = sinon.stub(service, 'deleteSurveyLocation').resolves(existingLocations[1]); + + await service.insertUpdateDeleteSurveyLocation(20, inputData); + + expect(getSurveyLocationsDataStub).to.be.calledOnceWith(20); + + expect(insertSurveyLocationsStub).to.be.calledOnceWith(20, { name: 'New Location' }); + + expect(updateSurveyLocationStub).to.be.calledOnceWith({ + survey_location_id: 30, + name: 'Updated Location 1' + }); + + expect(deleteSurveyLocationStub).to.be.calledOnceWith(31); + }); + }); + + describe('deleteSurveyLocation', () => { + afterEach(() => { + sinon.restore(); + }); + + it('calls the deleteSurveyLocation method of SurveyLocationService with correct arguments', async () => { + const dbConnection = getMockDBConnection(); + const service = new SurveyService(dbConnection); + const surveyLocationServiceStub = sinon + .stub(SurveyLocationService.prototype, 'deleteSurveyLocation') + .resolves({ survey_location_id: 30, name: 'Location 1' } as SurveyLocationRecord); + + const response = await service.deleteSurveyLocation(30); + + expect(surveyLocationServiceStub).to.be.calledOnceWith(30); + expect(response).to.eql({ survey_location_id: 30, name: 'Location 1' }); + }); + }); + + describe('updateSurveyLocation', () => { + afterEach(() => { + sinon.restore(); + }); + + it('calls the updateSurveyLocation method of SurveyLocationService with correct arguments', async () => { + const dbConnection = getMockDBConnection(); + const service = new SurveyService(dbConnection); + const surveyLocationServiceStub = sinon.stub(SurveyLocationService.prototype, 'updateSurveyLocation').resolves(); + + const input = { survey_location_id: 30, name: 'Updated Location 1' } as PostSurveyLocationData; + + await service.updateSurveyLocation(input); + + expect(surveyLocationServiceStub).to.be.calledOnceWith(input); + }); + }); }); /* diff --git a/api/src/services/survey-service.ts b/api/src/services/survey-service.ts index b7b7c3d5f3..be73181922 100644 --- a/api/src/services/survey-service.ts +++ b/api/src/services/survey-service.ts @@ -1,8 +1,8 @@ import { Feature } from 'geojson'; import { MESSAGE_CLASS_NAME, SUBMISSION_MESSAGE_TYPE, SUBMISSION_STATUS_TYPE } from '../constants/status'; import { IDBConnection } from '../database/db'; -import { PostLocationData, PostProprietorData, PostSurveyObject } from '../models/survey-create'; -import { PutPartnershipsData, PutSurveyLocationData, PutSurveyObject } from '../models/survey-update'; +import { PostProprietorData, PostSurveyObject } from '../models/survey-create'; +import { PostSurveyLocationData, PutPartnershipsData, PutSurveyObject } from '../models/survey-update'; import { GetAncillarySpeciesData, GetAttachmentsData, @@ -494,7 +494,7 @@ export class SurveyService extends DBService { * @return {*} {Promise} * @memberof SurveyService */ - async insertSurveyLocations(surveyId: number, data: PostLocationData): Promise { + async insertSurveyLocations(surveyId: number, data: PostSurveyLocationData): Promise { const service = new SurveyLocationService(this.connection); return service.insertSurveyLocation(surveyId, data); } @@ -714,8 +714,8 @@ export class SurveyService extends DBService { promises.push(this.updateSurveyProprietorData(surveyId, putSurveyData)); } - if (putSurveyData?.locations) { - promises.push(Promise.all(putSurveyData.locations.map((item) => this.updateSurveyLocation(item)))); + if (putSurveyData?.locations.length) { + promises.push(this.insertUpdateDeleteSurveyLocation(surveyId, putSurveyData.locations)); } if (putSurveyData?.participants.length) { @@ -750,7 +750,51 @@ export class SurveyService extends DBService { await Promise.all(promises); } - async updateSurveyLocation(data: PutSurveyLocationData): Promise { + /** + * Handles the create, update and deletion of survey locations based on the given data. + * + * @param {number} surveyId + * @param {PostSurveyLocationData} data + * @returns {*} {Promise} + */ + async insertUpdateDeleteSurveyLocation(surveyId: number, data: PostSurveyLocationData[]): Promise { + const existingLocations = await this.getSurveyLocationsData(surveyId); + // compare existing locations with passed in locations + // any locations not found in both arrays will be deleted + const deletes = existingLocations.filter( + (existing) => !data.find((incoming) => incoming?.survey_location_id === existing.survey_location_id) + ); + const deletePromises = deletes.map((item) => this.deleteSurveyLocation(item.survey_location_id)); + + const inserts = data.filter((item) => !item.survey_location_id); + const insertPromises = inserts.map((item) => this.insertSurveyLocations(surveyId, item)); + + const updates = data.filter((item) => item.survey_location_id); + const updatePromises = updates.map((item) => this.updateSurveyLocation(item)); + + return Promise.all([insertPromises, updatePromises, deletePromises]); + } + + /** + * Deletes a survey location for the given id. Returns the deleted record + * + * @param {number} surveyLocationId Id of the record to delete + * @returns {*} {Promise} The deleted record + * @memberof SurveyService + */ + async deleteSurveyLocation(surveyLocationId: number): Promise { + const surveyLocationService = new SurveyLocationService(this.connection); + return surveyLocationService.deleteSurveyLocation(surveyLocationId); + } + + /** + * Updates Survey Locations based on the data provided + * + * @param {PostSurveyLocationData} data + * @returns {*} {Promise} + * @memberof SurveyService + */ + async updateSurveyLocation(data: PostSurveyLocationData): Promise { const surveyLocationService = new SurveyLocationService(this.connection); return surveyLocationService.updateSurveyLocation(data); } diff --git a/api/src/services/user-service.ts b/api/src/services/user-service.ts index 9a6460a144..01b6268b43 100644 --- a/api/src/services/user-service.ts +++ b/api/src/services/user-service.ts @@ -1,3 +1,4 @@ +import { SYSTEM_ROLE } from '../constants/roles'; import { IDBConnection } from '../database/db'; import { ApiExecuteSQLError } from '../errors/api-error'; import { SystemUser, UserRepository, UserSearchCriteria } from '../repositories/user-repository'; @@ -15,6 +16,19 @@ export class UserService extends DBService { this.userRepository = new UserRepository(connection); } + /** + * Checks if the given system user is an admin (has an admin level system role). + * + * @param {SystemUser} systemUser + * @return {*} {boolean} `true` if the user is an admin, `false` otherwise. + */ + static isAdmin(systemUser: SystemUser): boolean { + return ( + systemUser.role_names.includes(SYSTEM_ROLE.SYSTEM_ADMIN) || + systemUser.role_names.includes(SYSTEM_ROLE.DATA_ADMINISTRATOR) + ); + } + /** * Fetch a single system user by their system user ID. * diff --git a/api/src/utils/xlsx-utils/cell-utils.ts b/api/src/utils/xlsx-utils/cell-utils.ts new file mode 100644 index 0000000000..b225b80590 --- /dev/null +++ b/api/src/utils/xlsx-utils/cell-utils.ts @@ -0,0 +1,115 @@ +import dayjs from 'dayjs'; +import { CellObject } from 'xlsx'; +import { safeTrim } from '../string-utils'; + +/** + * Trims whitespace from the value of a string type cell. + * Trims whitespace from the formatted text value of a cell, if present. + * + * @export + * @param {CellObject} cell + * @return {*} + */ +export function trimCellWhitespace(cell: CellObject) { + if (isStringCell(cell)) { + // check and clean raw strings + cell.v = safeTrim(cell.v); + } + + if (cell.w) { + // check and clean formatted strings + cell.w = safeTrim(cell.w); + } + + return cell; +} + +/** + * Attempts to update the cells value with a formatted date or time value if the cell is a date type cell that has a + * date or time format. + * + * @see https://docs.sheetjs.com/docs/csf/cell for details on cell fields + * @export + * @param {CellObject} cell + * @return {*} + */ +export function replaceCellDates(cell: CellObject) { + if (!isDateCell(cell)) { + return cell; + } + + const cellDate = dayjs(cell.v as any); + + if (!cellDate.isValid()) { + return cell; + } + + if (isDateFormatCell(cell)) { + const DateFormat = 'YYYY-MM-DD'; + cell.v = cellDate.format(DateFormat); + return cell; + } + + if (isTimeFormatCell(cell)) { + const TimeFormat = 'HH:mm'; + cell.v = cellDate.format(TimeFormat); + return cell; + } + + return cell; +} + +/** + * Checks if the cell has type string. + * + * @export + * @param {CellObject} cell + * @return {*} {boolean} `true` if the cell has type string, `false` otherwise. + */ +export function isStringCell(cell: CellObject): boolean { + return cell.t === 's'; +} + +/** + * Checks if the cell has type date. + * + * @export + * @param {CellObject} cell + * @return {*} {boolean} `true` if the cell has type date, `false` otherwise. + */ +export function isDateCell(cell: CellObject): boolean { + return cell.t === 'd'; +} + +/** + * Checks if the cell has a format, and if the format is likely a date format. + * + * @export + * @param {CellObject} cell + * @return {*} {boolean} `true` if the cell has a date format, `false` otherwise. + */ +export function isDateFormatCell(cell: CellObject): boolean { + if (!cell.z) { + return false; + } + + // format contains `d` and/or `y` which are values only used in date formats + return String(cell.z).includes('d') || String(cell.z).includes('y'); +} + +/** + * Checks if the cell has a format, and if the format is likely a time format. + * + * @export + * @param {CellObject} cell + * @return {*} {boolean} `true` if the cell has a time format, `false` otherwise. + */ +export function isTimeFormatCell(cell: CellObject): boolean { + if (!cell.z) { + // Not a date cell and/or has no date format + return false; + } + + // format contains `h` and/or `ss` which are values only used in time formats, or date formats that include time + return String(cell.z).includes('h') || String(cell.z).includes('ss'); +} diff --git a/api/src/utils/xlsx-utils/worksheet-utils.ts b/api/src/utils/xlsx-utils/worksheet-utils.ts new file mode 100644 index 0000000000..0d18554327 --- /dev/null +++ b/api/src/utils/xlsx-utils/worksheet-utils.ts @@ -0,0 +1,267 @@ +import moment from 'moment'; +import xlsx, { CellObject } from 'xlsx'; +import { MediaFile } from '../media/media-file'; +import { safeToLowerCase, safeTrim } from '../string-utils'; +import { replaceCellDates, trimCellWhitespace } from './cell-utils'; + +/** + * Returns true if the given cell is a date type cell. + * + * @export + * @param {MediaFile} file + * @param {xlsx.ParsingOptions} [options] + * @return {*} {xlsx.WorkBook} + */ +export function constructXLSXWorkbook(file: MediaFile, options?: xlsx.ParsingOptions): xlsx.WorkBook { + return xlsx.read(file.buffer, { cellDates: true, cellNF: true, cellHTML: false, ...options }); +} + +/** + * Constructs a CSVWorksheets from the given workbook + * + * @export + * @param {xlsx.WorkBook} workbook + * @return {*} {CSVWorksheets} + */ +export function constructWorksheets(workbook: xlsx.WorkBook): xlsx.WorkSheet { + const worksheets: xlsx.WorkSheet = {}; + + Object.entries(workbook.Sheets).forEach(([key, value]) => { + worksheets[key] = value; + }); + + return worksheets; +} + +/** + * Get the headers for the given worksheet. + * + * @export + * @param {xlsx.WorkSheet} worksheet + * @return {*} {string[]} + */ +export function getWorksheetHeaders(worksheet: xlsx.WorkSheet): string[] { + const originalRange = getWorksheetRange(worksheet); + + if (!originalRange) { + return []; + } + const customRange: xlsx.Range = { ...originalRange, e: { ...originalRange.e, r: 0 } }; + + const aoaHeaders: any[][] = xlsx.utils.sheet_to_json(worksheet, { + header: 1, + blankrows: false, + range: customRange + }); + + let headers = []; + + if (aoaHeaders.length > 0) { + // Parse the headers array from the array of arrays produced by calling `xlsx.utils.sheet_to_json` + headers = aoaHeaders[0].map(safeTrim); + } + + return headers; +} + +/** + * Get the headers for the given worksheet, with all values converted to lowercase. + * + * @export + * @param {xlsx.WorkSheet} worksheet + * @return {*} {string[]} + */ +export function getHeadersLowerCase(worksheet: xlsx.WorkSheet): string[] { + return getWorksheetHeaders(worksheet).map(safeToLowerCase); +} + +/** + * Get the index of the given header name. + * + * @export + * @param {xlsx.WorkSheet} worksheet + * @param {string} headerName + * @return {*} {number} + */ +export function getHeaderIndex(worksheet: xlsx.WorkSheet, headerName: string): number { + return getWorksheetHeaders(worksheet).indexOf(headerName); +} + +/** + * Return an array of row value arrays. + * + * @export + * @param {xlsx.WorkSheet} worksheet + * @return {*} {string[][]} + */ +export function getWorksheetRows(worksheet: xlsx.WorkSheet): string[][] { + const originalRange = getWorksheetRange(worksheet); + + if (!originalRange) { + return []; + } + + const rowsToReturn: string[][] = []; + + for (let i = 1; i <= originalRange.e.r; i++) { + const row = new Array(getWorksheetHeaders(worksheet).length); + let rowHasValues = false; + + for (let j = 0; j <= originalRange.e.c; j++) { + const cellAddress = { c: j, r: i }; + const cellRef = xlsx.utils.encode_cell(cellAddress); + const cell = worksheet[cellRef]; + + if (!cell) { + continue; + } + + row[j] = trimCellWhitespace(replaceCellDates(cell)).v; + + rowHasValues = true; + } + + if (row.length && rowHasValues) { + rowsToReturn.push(row); + } + } + + return rowsToReturn; +} + +/** + * Return an array of row value arrays. + * + * @export + * @param {xlsx.WorkSheet} worksheet + * @return {*} {Record[]} + */ +export function getWorksheetRowObjects(worksheet: xlsx.WorkSheet): Record[] { + const ref = worksheet['!ref']; + + if (!ref) { + return []; + } + + const rowObjectsArray: Record[] = []; + const rows = getWorksheetRows(worksheet); + const headers = getWorksheetHeaders(worksheet); + + rows.forEach((row: string[]) => { + const rowObject = {}; + + headers.forEach((header: string, index: number) => { + rowObject[header] = row[index]; + }); + + rowObjectsArray.push(rowObject); + }); + + return rowObjectsArray; +} + +/** + * Return boolean indicating whether the worksheet has the expected headers. + * + * @export + * @param {xlsx.WorkSheet} worksheet + * @param {string[]} expectedHeaders + * @return {*} {boolean} + */ +export function validateWorksheetHeaders(worksheet: xlsx.WorkSheet, expectedHeaders: string[]): boolean { + const worksheetHeaders = getWorksheetHeaders(worksheet); + + if (worksheetHeaders.length !== expectedHeaders.length) { + return false; + } + + return expectedHeaders.every((header) => worksheetHeaders.includes(header)); +} + +/** + * Return boolean indicating whether the worksheet has correct column types. + * + * @export + * @param {xlsx.WorkSheet} worksheet + * @param {string[]} rowValueTypes + * @return {*} {boolean} + */ +export function validateWorksheetColumnTypes(worksheet: xlsx.WorkSheet, rowValueTypes: string[]): boolean { + const worksheetRows = getWorksheetRows(worksheet); + + return worksheetRows.every((row) => { + if (row.length !== rowValueTypes.length) { + return false; + } + + return Object.values(row).every((value, index) => { + const type = typeof value; + + if (rowValueTypes[index] === 'date') { + return moment(value).isValid(); + } + + return rowValueTypes[index] === type; + }); + }); +} + +/** + * Get a worksheet by name. + * + * @export + * @param {xlsx.WorkBook} workbook + * @param {string} sheetName + * @return {*} {xlsx.WorkSheet} + */ +export function getWorksheetByName(workbook: xlsx.WorkBook, sheetName: string): xlsx.WorkSheet { + return workbook.Sheets[sheetName]; +} + +/** + * Get a worksheets decoded range object, or return undefined if the worksheet is missing range information. + * + * @export + * @param {xlsx.WorkSheet} worksheet + * @return {*} {(xlsx.Range | undefined)} + */ +export function getWorksheetRange(worksheet: xlsx.WorkSheet): xlsx.Range | undefined { + const ref = worksheet['!ref']; + + if (!ref) { + return undefined; + } + + return xlsx.utils.decode_range(ref); +} +/** + * Iterates over the cells in the worksheet and: + * - Trims whitespace from cell values. + * - Converts `Date` objects to ISO strings. + * + * https://stackoverflow.com/questions/61789174/how-can-i-remove-all-the-spaces-in-the-cells-of-excelsheet-using-nodejs-code + * @param worksheet + */ +export function prepareWorksheetCells(worksheet: xlsx.WorkSheet) { + const range = getWorksheetRange(worksheet); + + if (!range) { + return undefined; + } + + for (let r = range.s.r; r < range.e.r; r++) { + for (let c = range.s.c; c < range.e.c; c++) { + const coord = xlsx.utils.encode_cell({ r, c }); + let cell: CellObject = worksheet[coord]; + + if (!cell || !cell.v) { + // Cell is null or has no raw value + continue; + } + + cell = replaceCellDates(cell); + + cell = trimCellWhitespace(cell); + } + } +} diff --git a/api/src/zod-schema/json.ts b/api/src/zod-schema/json.ts index 4b101baa54..01f8613f8c 100644 --- a/api/src/zod-schema/json.ts +++ b/api/src/zod-schema/json.ts @@ -1,9 +1,15 @@ import * as z from 'zod'; // Defines a Zod Schema for a valid JSON value +// Not safe of massive JSON object. Causes a Heap out of memory error const literalSchema = z.union([z.string(), z.number(), z.boolean(), z.null()]); type Literal = z.infer; type Json = Literal | { [key: string]: Json } | Json[]; export const jsonSchema: z.ZodType = z.lazy(() => z.union([literalSchema, z.array(jsonSchema), z.record(jsonSchema)]) ); + +// Defines a Zod Schema for a shallow JSON value +export const shallowJsonSchema: z.ZodType = z.lazy(() => + z.union([literalSchema, z.array(z.any()), z.record(z.string()), z.record(z.any())]) +); diff --git a/app/package-lock.json b/app/package-lock.json index 320cefe5b6..8dab179568 100644 --- a/app/package-lock.json +++ b/app/package-lock.json @@ -2894,9 +2894,9 @@ } }, "@react-leaflet/core": { - "version": "1.0.2", - "resolved": "https://registry.npmjs.org/@react-leaflet/core/-/core-1.0.2.tgz", - "integrity": "sha512-QbleYZTMcgujAEyWGki8Lx6cXQqWkNtQlqf5c7NImlIp8bKW66bFpez/6EVatW7+p9WKBOEOVci/9W7WW70EZg==" + "version": "2.1.0", + "resolved": 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"https://registry.npmjs.org/topojson-client/-/topojson-client-3.1.0.tgz", + "integrity": "sha512-605uxS6bcYxGXw9qi62XyrV6Q3xwbndjachmNxu8HWTtVPxZfEJN9fd/SZS1Q54Sn2y0TMyMxFj/cJINqGHrKw==", + "requires": { + "commander": "2" + }, + "dependencies": { + "commander": { + "version": "2.20.3", + "resolved": "https://registry.npmjs.org/commander/-/commander-2.20.3.tgz", + "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==" + } + } + }, + "topojson-server": { + "version": "3.0.1", + "resolved": "https://registry.npmjs.org/topojson-server/-/topojson-server-3.0.1.tgz", + "integrity": "sha512-/VS9j/ffKr2XAOjlZ9CgyyeLmgJ9dMwq6Y0YEON8O7p/tGGk+dCWnrE03zEdu7i4L7YsFZLEPZPzCvcB7lEEXw==", + "requires": { + "commander": "2" + }, + "dependencies": { + "commander": { + "version": "2.20.3", + "resolved": "https://registry.npmjs.org/commander/-/commander-2.20.3.tgz", + "integrity": "sha512-GpVkmM8vF2vQUkj2LvZmD35JxeJOLCwJ9cUkugyk2nuhbv3+mJvpLYYt+0+USMxE+oj+ey/lJEnhZw75x/OMcQ==" + } + } + }, "toposort": { "version": "2.0.2", "resolved": "https://registry.npmjs.org/toposort/-/toposort-2.0.2.tgz", - "integrity": "sha1-riF2gXXRVZ1IvvNUILL0li8JwzA=" + "integrity": "sha512-0a5EOkAUp8D4moMi2W8ZF8jcga7BgZd91O/yabJCFY8az+XSzeGyTKs0Aoo897iV1Nj6guFq8orWDS96z91oGg==" }, "tough-cookie": { "version": "2.5.0", @@ -16966,7 +18502,7 @@ "trim-newlines": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/trim-newlines/-/trim-newlines-1.0.0.tgz", - "integrity": "sha1-WIeWa7WCpFA6QetST301ARgVphM=" + "integrity": "sha512-Nm4cF79FhSTzrLKGDMi3I4utBtFv8qKy4sq1enftf2gMdpqI8oVQTAfySkTz5r49giVzDj88SVZXP4CeYQwjaw==" }, "true-case-path": { "version": "1.0.3", @@ -17042,15 +18578,20 @@ "tunnel-agent": { "version": "0.6.0", "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz", - "integrity": "sha1-J6XeoGs2sEoKmWZ3SykIaPD8QP0=", + "integrity": "sha512-McnNiV1l8RYeY8tBgEpuodCC1mLUdbSN+CYBL7kJsJNInOP8UjDDEwdk6Mw60vdLLrr5NHKZhMAOSrR2NZuQ+w==", "requires": { "safe-buffer": "^5.0.1" } }, + "turf-jsts": { + "version": "1.2.3", + "resolved": "https://registry.npmjs.org/turf-jsts/-/turf-jsts-1.2.3.tgz", + "integrity": "sha512-Ja03QIJlPuHt4IQ2FfGex4F4JAr8m3jpaHbFbQrgwr7s7L6U8ocrHiF3J1+wf9jzhGKxvDeaCAnGDot8OjGFyA==" + }, "tweetnacl": { "version": "0.14.5", "resolved": "https://registry.npmjs.org/tweetnacl/-/tweetnacl-0.14.5.tgz", - "integrity": "sha1-WuaBd/GS1EViadEIr6k/+HQ/T2Q=" + "integrity": "sha512-KXXFFdAbFXY4geFIwoyNK+f5Z1b7swfXABfL7HXCmoIWMKU3dmS26672A4EeQtDzLKy7SXmfBu51JolvEKwtGA==" }, "type-check": { "version": "0.4.0", @@ -17201,7 +18742,7 @@ "unpipe": { "version": "1.0.0", "resolved": "https://registry.npmjs.org/unpipe/-/unpipe-1.0.0.tgz", - "integrity": "sha1-sr9O6FFKrmFltIF4KdIbLvSZBOw=" + "integrity": "sha512-pjy2bYhSsufwWlKwPc+l3cN7+wuJlK6uz0YdJEOlQDbl6jo/YlPi4mb8agUkVC8BF7V8NuzeyPNqRksA3hztKQ==" }, "unquote": { "version": "1.1.1", @@ -17258,7 +18799,7 @@ "util-deprecate": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz", - "integrity": "sha1-RQ1Nyfpw3nMnYvvS1KKJgUGaDM8=" + "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==" }, "util.promisify": { "version": "1.0.1", @@ -17281,7 +18822,7 @@ "utils-merge": { "version": "1.0.1", "resolved": "https://registry.npmjs.org/utils-merge/-/utils-merge-1.0.1.tgz", - "integrity": "sha1-n5VxD1CiZ5R7LMwSR0HBAoQn5xM=" + "integrity": "sha512-pMZTvIkT1d+TFGvDOqodOclx0QWkkgi6Tdoa8gC8ffGAAqz9pzPTZWAybbsHHoED/ztMtkv/VoYTYyShUn81hA==" }, "uuid": { "version": "8.3.2", @@ -17316,12 +18857,12 @@ "vary": { "version": "1.1.2", "resolved": "https://registry.npmjs.org/vary/-/vary-1.1.2.tgz", - "integrity": "sha1-IpnwLG3tMNSllhsLn3RSShj2NPw=" + "integrity": "sha512-BNGbWLfd0eUPabhkXUVm0j8uuvREyTh5ovRa/dyow/BqAbZJyC+5fU+IzQOzmAKzYqYRAISoRhdQr3eIZ/PXqg==" }, "verror": { "version": "1.10.0", "resolved": "https://registry.npmjs.org/verror/-/verror-1.10.0.tgz", - "integrity": "sha1-OhBcoXBTr1XW4nDB+CiGguGNpAA=", + "integrity": "sha512-ZZKSmDAEFOijERBLkmYfJ+vmk3w+7hOLYDNkRCuRuMJGEmqYNCNLyBBFwWKVMhfwaEF3WOd0Zlw86U/WC/+nYw==", "requires": { "assert-plus": "^1.0.0", "core-util-is": "1.0.2", @@ -18025,7 +19566,7 @@ "is-fullwidth-code-point": { "version": "2.0.0", "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-2.0.0.tgz", - "integrity": "sha1-o7MKXE8ZkYMWeqq5O+764937ZU8=" + "integrity": "sha512-VHskAKYM8RfSFXwee5t5cbN5PZeq1Wrh6qd5bkyiXIf6UQcN6w/A0eXM9r6t8d+GYOh+o6ZhiEnb88LN/Y8m2w==" }, "string-width": { "version": "3.1.0", @@ -18050,7 +19591,7 @@ "wrappy": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", - "integrity": "sha1-tSQ9jz7BqjXxNkYFvA0QNuMKtp8=" + "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==" }, "write-file-atomic": { "version": "4.0.2", @@ -18071,7 +19612,7 @@ "xml": { "version": "1.0.1", "resolved": "https://registry.npmjs.org/xml/-/xml-1.0.1.tgz", - "integrity": "sha1-eLpyAgApxbyHuKgaPPzXS0ovweU=", + "integrity": "sha512-huCv9IH9Tcf95zuYCsQraZtWnJvBtLVE0QHMOs8bWyZAFZNDcYjsPq1nEx8jKA9y+Beo9v+7OBPRisQTjinQMw==", "dev": true }, "xml-name-validator": { @@ -18134,7 +19675,7 @@ "is-fullwidth-code-point": { "version": "2.0.0", "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-2.0.0.tgz", - "integrity": "sha1-o7MKXE8ZkYMWeqq5O+764937ZU8=" + "integrity": "sha512-VHskAKYM8RfSFXwee5t5cbN5PZeq1Wrh6qd5bkyiXIf6UQcN6w/A0eXM9r6t8d+GYOh+o6ZhiEnb88LN/Y8m2w==" }, "string-width": { "version": "3.1.0", diff --git a/app/package.json b/app/package.json index 26af7df256..658f1aeb06 100644 --- a/app/package.json +++ b/app/package.json @@ -40,21 +40,22 @@ "@mui/x-data-grid-pro": "^6.12.1", "@mui/x-date-pickers": "^6.11.0", "@react-keycloak/web": "^3.4.0", - "@react-leaflet/core": "~1.0.2", + "@react-leaflet/core": "~2.1.0", "@tmcw/togeojson": "~4.2.0", "@turf/bbox": "~6.3.0", "@turf/boolean-equal": "~6.3.0", "@turf/center-of-mass": "~6.5.0", "@turf/centroid": "~6.4.0", + "@turf/turf": "^6.5.0", "axios": "~0.21.4", "clsx": "~1.2.1", "express": "~4.17.1", "formik": "~2.4.1", "keycloak-js": "^21.1.1", - "leaflet": "~1.7.1", + "leaflet": "~1.9.4", "leaflet-draw": "~1.0.4", "leaflet-fullscreen": "~1.0.2", - "leaflet.locatecontrol": "~0.76.0", + "leaflet.locatecontrol": "~0.79.0", "lodash-es": "~4.17.21", "moment": "~2.29.4", "node-sass": "~4.14.1", @@ -63,8 +64,8 @@ "react": "^17.0.2", "react-dom": "^17.0.2", "react-dropzone": "~11.3.2", - "react-leaflet": "~3.1.0", - "react-leaflet-cluster": "~1.0.3", + "react-leaflet": "~4.2.1", + "react-leaflet-cluster": "~2.1.0", "react-number-format": "~4.5.2", "react-router": "^5.3.3", "react-router-dom": "^5.3.3", @@ -83,9 +84,9 @@ "@testing-library/user-event": "~12.8.3", "@types/geojson": "~7946.0.7", "@types/jest": "~29.5.2", - "@types/leaflet": "^1.8.0", - "@types/leaflet-draw": "^1.0.5", - "@types/leaflet-fullscreen": "~1.0.6", + "@types/leaflet": "^1.9.7", + "@types/leaflet-draw": "^1.0.9", + "@types/leaflet-fullscreen": "~1.0.8", "@types/lodash-es": "~4.17.4", "@types/node": "~14.14.31", "@types/node-sass": "~4.11.2", @@ -93,7 +94,7 @@ "@types/qs": "~6.9.5", "@types/react": "^18.0.17", "@types/react-dom": "^18.0.6", - "@types/react-leaflet": "~2.8.2", + "@types/react-leaflet": "~3.0.0", "@types/react-router": "^5.1.20", "@types/react-router-dom": "^5.3.3", "@types/react-window": "~1.8.2", diff --git a/app/src/components/boundary/InferredLocationDetails.tsx b/app/src/components/boundary/InferredLocationDetails.tsx index d403f0634c..ec8fc9c834 100644 --- a/app/src/components/boundary/InferredLocationDetails.tsx +++ b/app/src/components/boundary/InferredLocationDetails.tsx @@ -1,41 +1,5 @@ -import { Theme } from '@mui/material'; import Box from '@mui/material/Box'; -import { grey } from '@mui/material/colors'; -import Divider from '@mui/material/Divider'; import Typography from '@mui/material/Typography'; -import { makeStyles } from '@mui/styles'; -import React from 'react'; - -const useStyles = makeStyles((theme: Theme) => ({ - boundaryGroup: { - clear: 'both', - overflow: 'hidden', - '&:first-child': { - marginTop: 0 - } - }, - boundaryList: { - margin: 0, - padding: 0, - listStyleType: 'none', - '& li': { - display: 'inline-block', - float: 'left' - }, - '& li + li': { - marginLeft: theme.spacing(1) - } - }, - metaSectionHeader: { - color: grey[600], - fontWeight: 700, - textTransform: 'uppercase', - '& + hr': { - marginTop: theme.spacing(0.75), - marginBottom: theme.spacing(0.75) - } - } -})); export interface IInferredLayers { parks: string[]; @@ -48,30 +12,32 @@ export interface IInferredLocationDetailsProps { layers: IInferredLayers; } -const InferredLocationDetails: React.FC = (props) => { - const classes = useStyles(); - const displayInferredLayersInfo = (data: any[], type: string) => { - if (!data.length) { +const InferredLocationDetails = (props: IInferredLocationDetailsProps) => { + const displayInferredLayersInfo = (layerNames: string[], type: string) => { + if (!layerNames.length) { return; } return ( - <> - - - {type} ({data.length}) - - - - {data.map((item: string, index: number) => ( - - {item} - {index < data.length - 1 && ', '} - - ))} - + + + {type} ({layerNames.length}) + + + {layerNames.map((name: string, index: number) => ( + + {name} + {index < layerNames.length - 1 && ', '} + + ))} - + ); }; diff --git a/app/src/components/boundary/MapBoundary.tsx b/app/src/components/boundary/MapBoundary.tsx index b445552f49..80fc6cd100 100644 --- a/app/src/components/boundary/MapBoundary.tsx +++ b/app/src/components/boundary/MapBoundary.tsx @@ -14,7 +14,6 @@ import { makeStyles } from '@mui/styles'; import InferredLocationDetails, { IInferredLayers } from 'components/boundary/InferredLocationDetails'; import ComponentDialog from 'components/dialog/ComponentDialog'; import FileUpload from 'components/file-upload/FileUpload'; -import { IUploadHandler } from 'components/file-upload/FileUploadItem'; import MapContainer from 'components/map/MapContainer'; import { ProjectSurveyAttachmentValidExtensions } from 'constants/attachments'; import { FormikContextType } from 'formik'; @@ -22,12 +21,7 @@ import { Feature } from 'geojson'; import { LatLngBoundsExpression } from 'leaflet'; import get from 'lodash-es/get'; import { useEffect, useState } from 'react'; -import { - calculateUpdatedMapBounds, - handleGPXUpload, - handleKMLUpload, - handleShapeFileUpload -} from 'utils/mapBoundaryUploadHelpers'; +import { boundaryUploadHelper, calculateUpdatedMapBounds } from 'utils/mapBoundaryUploadHelpers'; const useStyles = makeStyles(() => ({ zoomToBoundaryExtentBtn: { @@ -67,7 +61,7 @@ const MapBoundary = (props: IMapBoundaryProps) => { const { name, title, mapId, bounds, formikProps } = props; - const { values, errors, setFieldValue } = formikProps; + const { values, errors, setFieldValue, setFieldError } = formikProps; const [openUploadBoundary, setOpenUploadBoundary] = useState(false); const [shouldUpdateBounds, setShouldUpdateBounds] = useState(false); @@ -84,18 +78,6 @@ const MapBoundary = (props: IMapBoundaryProps) => { setShouldUpdateBounds(false); }, [updatedBounds]); - const boundaryUploadHandler = (): IUploadHandler => { - return async (file) => { - if (file?.type.includes('zip') || file?.name.includes('.zip')) { - handleShapeFileUpload(file, name, formikProps); - } else if (file?.type.includes('gpx') || file?.name.includes('.gpx')) { - await handleGPXUpload(file, name, formikProps); - } else if (file?.type.includes('kml') || file?.name.includes('.kml')) { - await handleKMLUpload(file, name, formikProps); - } - }; - }; - return ( <> { If importing a shapefile, it must be configured with a valid projection. { + setFieldValue(name, [...features]); + }, + onFailure: (message) => { + setFieldError(name, message); + } + })} dropZoneProps={{ acceptedFileExtensions: ProjectSurveyAttachmentValidExtensions.SPATIAL }} diff --git a/app/src/components/data-grid/autocomplete/AsyncAutocompleteDataGridEditCell.tsx b/app/src/components/data-grid/autocomplete/AsyncAutocompleteDataGridEditCell.tsx index 68d4a2c653..8f63ee2e48 100644 --- a/app/src/components/data-grid/autocomplete/AsyncAutocompleteDataGridEditCell.tsx +++ b/app/src/components/data-grid/autocomplete/AsyncAutocompleteDataGridEditCell.tsx @@ -1,5 +1,3 @@ -import { mdiMagnify } from '@mdi/js'; -import Icon from '@mdi/react'; import Autocomplete, { createFilterOptions } from '@mui/material/Autocomplete'; import Box from '@mui/material/Box'; import CircularProgress from '@mui/material/CircularProgress'; @@ -170,16 +168,11 @@ const AsyncAutocompleteDataGridEditCell = ( - - - ), endAdornment: ( <> {isLoading ? : null} diff --git a/app/src/components/data-grid/autocomplete/AutocompleteDataGridEditCell.tsx b/app/src/components/data-grid/autocomplete/AutocompleteDataGridEditCell.tsx index 4adc182dca..6b2b257fbe 100644 --- a/app/src/components/data-grid/autocomplete/AutocompleteDataGridEditCell.tsx +++ b/app/src/components/data-grid/autocomplete/AutocompleteDataGridEditCell.tsx @@ -98,8 +98,8 @@ const AutocompleteDataGridEditCell = ( ) => { const { dataGridProps, options } = props; - return <>{options.find((item) => item.value === dataGridProps.value)?.label ?? ''}; + return ( + + {options.find((item) => item.value === dataGridProps.value)?.label ?? ''} + + ); }; export default AutocompleteDataGridViewCell; diff --git a/app/src/components/data-grid/taxonomy/TaxonomyDataGridEditCell.tsx b/app/src/components/data-grid/taxonomy/TaxonomyDataGridEditCell.tsx index 0454267711..1a29caee51 100644 --- a/app/src/components/data-grid/taxonomy/TaxonomyDataGridEditCell.tsx +++ b/app/src/components/data-grid/taxonomy/TaxonomyDataGridEditCell.tsx @@ -27,7 +27,17 @@ const TaxonomyDataGridEditCell = | null> => { - const response = await biohubApi.taxonomy.getSpeciesFromIds([Number(speciesId)]); + if (!speciesId) { + return null; + } + + const id = Number(speciesId); + + if (isNaN(id)) { + return null; + } + + const response = await biohubApi.taxonomy.getSpeciesFromIds([id]); if (response.searchResponse.length !== 1) { return null; @@ -43,6 +53,11 @@ const TaxonomyDataGridEditCell = []) => void ) => { + if (!searchTerm) { + onSearchResults([]); + return; + } + const response = await biohubApi.taxonomy.searchSpecies(searchTerm); const options = response.searchResponse.map((item) => ({ value: parseInt(item.id) as ValueType, diff --git a/app/src/components/data-grid/taxonomy/TaxonomyDataGridViewCell.tsx b/app/src/components/data-grid/taxonomy/TaxonomyDataGridViewCell.tsx index c08f148a2a..dbe30f1d2d 100644 --- a/app/src/components/data-grid/taxonomy/TaxonomyDataGridViewCell.tsx +++ b/app/src/components/data-grid/taxonomy/TaxonomyDataGridViewCell.tsx @@ -1,3 +1,4 @@ +import Typography from '@mui/material/Typography'; import { GridRenderCellParams, GridValidRowModel } from '@mui/x-data-grid'; import { useBiohubApi } from 'hooks/useBioHubApi'; import useDataLoader from 'hooks/useDataLoader'; @@ -20,7 +21,19 @@ const TaxonomyDataGridViewCell = ( const biohubApi = useBiohubApi(); - const taxonomyDataLoader = useDataLoader(() => biohubApi.taxonomy.getSpeciesFromIds([Number(dataGridProps.value)])); + const taxonomyDataLoader = useDataLoader(async () => { + if (!dataGridProps.value) { + return { searchResponse: [] }; + } + + const id = Number(dataGridProps.value); + + if (isNaN(id)) { + return { searchResponse: [] }; + } + + return biohubApi.taxonomy.getSpeciesFromIds([Number(dataGridProps.value)]); + }); taxonomyDataLoader.load(); @@ -32,7 +45,14 @@ const TaxonomyDataGridViewCell = ( return null; } - return <>{taxonomyDataLoader.data?.searchResponse[0].label}; + return ( + + {taxonomyDataLoader.data?.searchResponse[0].label} + + ); }; export default TaxonomyDataGridViewCell; diff --git a/app/src/components/dialog/ComponentDialog.tsx b/app/src/components/dialog/ComponentDialog.tsx index d9299114a3..7fe712a50a 100644 --- a/app/src/components/dialog/ComponentDialog.tsx +++ b/app/src/components/dialog/ComponentDialog.tsx @@ -1,13 +1,13 @@ -import Button from '@mui/material/Button'; +import { LoadingButton } from '@mui/lab'; import Dialog, { DialogProps } from '@mui/material/Dialog'; import DialogActions from '@mui/material/DialogActions'; import DialogContent from '@mui/material/DialogContent'; import DialogTitle from '@mui/material/DialogTitle'; import useTheme from '@mui/material/styles/useTheme'; import useMediaQuery from '@mui/material/useMediaQuery'; -import React, { PropsWithChildren } from 'react'; +import { PropsWithChildren } from 'react'; -export interface IComponentDialogProps { +export type IComponentDialogProps = PropsWithChildren<{ /** * The dialog window title text. * @@ -43,7 +43,12 @@ export interface IComponentDialogProps { * @memberof IComponentDialogProps */ dialogProps?: Partial; -} + + /** + * A boolean tracking if work is being done and a loading spinner needs to be displayed + */ + isLoading?: boolean; +}>; /** * A dialog to wrap any component(s) that need to be displayed as a modal. @@ -53,7 +58,7 @@ export interface IComponentDialogProps { * @param {*} props * @return {*} */ -const ComponentDialog: React.FC> = (props) => { +const ComponentDialog = (props: IComponentDialogProps) => { const theme = useTheme(); const fullScreen = useMediaQuery(theme.breakpoints.down('sm')); @@ -73,9 +78,9 @@ const ComponentDialog: React.FC> = (pro {props.dialogTitle} {props.children} - + ); diff --git a/app/src/components/dialog/FileUploadDialog.tsx b/app/src/components/dialog/FileUploadDialog.tsx new file mode 100644 index 0000000000..7817101916 --- /dev/null +++ b/app/src/components/dialog/FileUploadDialog.tsx @@ -0,0 +1,81 @@ +import { LoadingButton } from '@mui/lab'; +import Button from '@mui/material/Button'; +import Dialog from '@mui/material/Dialog'; +import DialogActions from '@mui/material/DialogActions'; +import DialogContent from '@mui/material/DialogContent'; +import DialogTitle from '@mui/material/DialogTitle'; +import useTheme from '@mui/material/styles/useTheme'; +import useMediaQuery from '@mui/material/useMediaQuery'; +import FileUpload, { IFileUploadProps } from 'components/file-upload/FileUpload'; +import { IFileHandler, ISubtextProps, UploadFileStatus } from 'components/file-upload/FileUploadItem'; +import { useState } from 'react'; +import { getFormattedFileSize } from 'utils/Utils'; +import { IComponentDialogProps } from './ComponentDialog'; + +interface IFileUploadDialogProps extends IComponentDialogProps { + uploadButtonLabel?: string; + onUpload: (file: File) => Promise; + FileUploadProps: Partial; +} + +const SubtextComponent = (props: ISubtextProps) => ( + <>{props.status === UploadFileStatus.STAGED ? getFormattedFileSize(props.file.size) : props.error ?? props.status} +); + +const FileUploadDialog = (props: IFileUploadDialogProps) => { + const theme = useTheme(); + const fullScreen = useMediaQuery(theme.breakpoints.down('sm')); + const [currentFile, setCurrentFile] = useState(null); + const [uploading, setUploading] = useState(false); + + const fileHandler: IFileHandler = (file: File | null) => { + setCurrentFile(file); + }; + + const handleUpload = () => { + if (!currentFile) { + return; + } + + setUploading(true); + props.onUpload(currentFile).finally(() => setUploading(false)); + }; + + return ( + + {props.dialogTitle} + + {props.children} + + + + handleUpload()} + color="primary" + variant="contained" + autoFocus> + {props.uploadButtonLabel ? props.uploadButtonLabel : 'Import'} + + + + + ); +}; + +export default FileUploadDialog; diff --git a/app/src/components/map/DatasetPopup.tsx b/app/src/components/map/DatasetPopup.tsx index 96db876a56..71845b184e 100644 --- a/app/src/components/map/DatasetPopup.tsx +++ b/app/src/components/map/DatasetPopup.tsx @@ -54,7 +54,7 @@ const DatasetPopup: React.FC { - return api.observation.getSpatialMetadata(submissionSpatialComponentIds); + return api.dwca.getSpatialMetadata(submissionSpatialComponentIds); }); dataLoader.load(); diff --git a/app/src/components/map/FeaturePopup.tsx b/app/src/components/map/FeaturePopup.tsx index 697996e43b..9f4c66d612 100644 --- a/app/src/components/map/FeaturePopup.tsx +++ b/app/src/components/map/FeaturePopup.tsx @@ -126,7 +126,7 @@ const FeaturePopup: React.FC { - return api.observation.getSpatialMetadata(submissionSpatialComponentIds); + return api.dwca.getSpatialMetadata(submissionSpatialComponentIds); }); metadataLoader.load(); diff --git a/app/src/components/map/MapContainer.tsx b/app/src/components/map/MapContainer.tsx index 50a12653f6..52ce9c3351 100644 --- a/app/src/components/map/MapContainer.tsx +++ b/app/src/components/map/MapContainer.tsx @@ -1,7 +1,7 @@ import { layerContentHandlers } from 'components/map/wfs-utils'; import { Feature } from 'geojson'; import { useBiohubApi } from 'hooks/useBioHubApi'; -import L, { LatLngBoundsExpression, LeafletEventHandlerFnMap } from 'leaflet'; +import L, { LatLng, LatLngBoundsExpression, LeafletEventHandlerFnMap } from 'leaflet'; import 'leaflet-fullscreen/dist/leaflet.fullscreen.css'; import 'leaflet-fullscreen/dist/Leaflet.fullscreen.js'; import iconRetina from 'leaflet/dist/images/marker-icon-2x.png'; @@ -24,6 +24,10 @@ import MarkerCluster, { IMarkerLayer } from './components/MarkerCluster'; import StaticLayers, { IStaticLayer } from './components/StaticLayers'; import WFSFeatureGroup from './WFSFeatureGroup'; +const point = (feature: Feature, latlng: LatLng) => { + return new L.CircleMarker(latlng, { radius: 6, fillOpacity: 1, fillColor: '#006edc', color: '#ffffff', weight: 1 }); +}; + /* Get leaflet icons working */ @@ -60,6 +64,7 @@ export interface IMapContainerProps { additionalLayers?: IAdditionalLayers; clusteredPointGeometries?: IClusteredPointGeometries[]; confirmDeletion?: boolean; + hideLayerControls?: boolean; setInferredLayersInfo?: (inferredLayersInfo: any) => void; onBoundsChange?: IMapBoundsOnChange; onDrawChange?: IDrawControlsOnChange; @@ -132,23 +137,27 @@ const MapContainer = (props: IMapContainerProps) => { // Get map geometries based on whether boundary is non editable or drawn/uploaded const mapGeometries: Feature[] = determineMapGeometries(drawControls?.initialFeatures, nonEditableGeometries); - const getFeatureDetails = await biohubApi.spatial.getRegions(mapGeometries); - - if (setInferredLayersInfo) { - setInferredLayersInfo({ - parks: getFeatureDetails.regions - .filter((item) => item.sourceLayer === 'WHSE_TANTALIS.TA_PARK_ECORES_PA_SVW') - .map((item) => item.regionName), - nrm: getFeatureDetails.regions - .filter((item) => item.sourceLayer === 'WHSE_ADMIN_BOUNDARIES.ADM_NR_REGIONS_SPG') - .map((item) => item.regionName), - env: getFeatureDetails.regions - .filter((item) => item.sourceLayer === 'WHSE_ADMIN_BOUNDARIES.EADM_WLAP_REGION_BND_AREA_SVW') - .map((item) => item.regionName), - wmu: getFeatureDetails.regions - .filter((item) => item.sourceLayer === 'WHSE_WILDLIFE_MANAGEMENT.WAA_WILDLIFE_MGMT_UNITS_SVW') - .map((item) => item.regionName) - }); + try { + const getFeatureDetails = await biohubApi.spatial.getRegions(mapGeometries); + + if (setInferredLayersInfo) { + setInferredLayersInfo({ + parks: getFeatureDetails.regions + .filter((item) => item.sourceLayer === 'WHSE_TANTALIS.TA_PARK_ECORES_PA_SVW') + .map((item) => item.regionName), + nrm: getFeatureDetails.regions + .filter((item) => item.sourceLayer === 'WHSE_ADMIN_BOUNDARIES.ADM_NR_REGIONS_SPG') + .map((item) => item.regionName), + env: getFeatureDetails.regions + .filter((item) => item.sourceLayer === 'WHSE_ADMIN_BOUNDARIES.EADM_WLAP_REGION_BND_AREA_SVW') + .map((item) => item.regionName), + wmu: getFeatureDetails.regions + .filter((item) => item.sourceLayer === 'WHSE_WILDLIFE_MANAGEMENT.WAA_WILDLIFE_MGMT_UNITS_SVW') + .map((item) => item.regionName) + }); + } + } catch (error) { + console.error(error); } }, 300), [biohubApi.spatial, drawControls?.initialFeatures, nonEditableGeometries, setInferredLayersInfo] @@ -188,8 +197,10 @@ const MapContainer = (props: IMapContainerProps) => { {clusteredPointGeometries && clusteredPointGeometries.length > 0 && ( - {clusteredPointGeometries.map((pointGeo: IClusteredPointGeometries, index: number) => ( - + {clusteredPointGeometries.map((pointGeo: IClusteredPointGeometries) => ( + {pointGeo.popupComponent} ))} @@ -197,7 +208,7 @@ const MapContainer = (props: IMapContainerProps) => { )} {nonEditableGeometries?.map((nonEditableGeo: INonEditableGeometries) => ( - + {nonEditableGeo.popupComponent} ))} @@ -208,20 +219,22 @@ const MapContainer = (props: IMapContainerProps) => { minZoom={7} featureKeyHandler={layerContentHandlers[selectedLayer].featureKeyHandler} popupContentHandler={layerContentHandlers[selectedLayer].popupContentHandler} - existingGeometry={drawControls?.initialFeatures} + existingGeometry={staticLayers?.flatMap((item) => item.features.map((feature) => feature.geoJSON))} onSelectGeometry={setPreDefinedGeometry} /> )} {additionalLayers && } - - + {props.hideLayerControls !== true && ( + + - + - - + + + )} ); }; diff --git a/app/src/components/map/OccurrenceFeatureGroup.tsx b/app/src/components/map/OccurrenceFeatureGroup.tsx index e8e8e8271b..62798ec6c1 100644 --- a/app/src/components/map/OccurrenceFeatureGroup.tsx +++ b/app/src/components/map/OccurrenceFeatureGroup.tsx @@ -19,7 +19,7 @@ const OccurrenceFeatureGroup: React.FC = (props) = const isMounted = useIsMounted(); const getOccurrences = async () => { - const occurrencesResponse = await biohubApi.observation.getOccurrencesForView( + const occurrencesResponse = await biohubApi.dwca.getOccurrencesForView( props.projectId, props.occurrenceSubmissionId ); diff --git a/app/src/components/map/WFSFeaturePopup.tsx b/app/src/components/map/WFSFeaturePopup.tsx index 73160c032c..4551facf67 100644 --- a/app/src/components/map/WFSFeaturePopup.tsx +++ b/app/src/components/map/WFSFeaturePopup.tsx @@ -60,7 +60,7 @@ const WFSFeaturePopup: React.FC = (props) => { return ( <> {popupContent.tooltip} - + {popupContent.content} {onSelectGeometry && ( diff --git a/app/src/components/map/components/BaseLayerControls.tsx b/app/src/components/map/components/BaseLayerControls.tsx index 3b5260d6e5..159ff01319 100644 --- a/app/src/components/map/components/BaseLayerControls.tsx +++ b/app/src/components/map/components/BaseLayerControls.tsx @@ -4,10 +4,10 @@ import { LayersControl, TileLayer } from 'react-leaflet'; const BaseLayerControls: React.FC = () => { return ( <> - - + + - + > = (props) => { const context = useLeafletContext(); const [deleteEvent, setDeleteEvent] = useState(null); diff --git a/app/src/components/map/components/DrawControls2.tsx b/app/src/components/map/components/DrawControls2.tsx new file mode 100644 index 0000000000..a68feb1452 --- /dev/null +++ b/app/src/components/map/components/DrawControls2.tsx @@ -0,0 +1,191 @@ +import { useLeafletContext } from '@react-leaflet/core'; +import { Feature } from 'geojson'; +import L from 'leaflet'; +import 'leaflet-draw'; +import 'leaflet-draw/dist/leaflet.draw.css'; +import { forwardRef, useCallback, useEffect, useImperativeHandle, useRef } from 'react'; + +/** + * Custom subset of `L.Control.DrawConstructorOptions` that omits `edit.featureGroup` as this will be added automatically + * by `DrawControls`. + * + * @export + * @interface IDrawControlsOptions + */ +export interface IDrawControlsOptions { + position?: L.ControlPosition; + draw?: L.Control.DrawOptions; + edit?: Omit; +} + +export interface IDrawControlsProps { + /** + * Options to control the draw/edit UI controls. + * + * @type {IDrawControlsOptions} + * @memberof IDrawControlsProps + */ + options?: IDrawControlsOptions; + /** + * Fired each time an item is drawn (a layer is added). + * + * @memberof IDrawControlsProps + */ + onLayerAdd: (event: L.DrawEvents.Created, leaflet_id: number) => void; + /** + * Fired each time an item (layer) is edited. + * + * @memberof IDrawControlsProps + */ + onLayerEdit: (event: L.DrawEvents.Edited) => void; + /** + * Fired each time an item (layer) is deleted. + * + * @memberof IDrawControlsProps + */ + onLayerDelete: (event: L.DrawEvents.Deleted) => void; +} + +export interface IDrawControlsRef { + /** + * Adds a GeoJson feature to a new layer in the draw controls layer group. + * + * @memberof IDrawControlsRef + */ + addLayer: (feature: Feature, layerId: (id: number) => void) => void; + + deleteLayer: (layerId: number) => void; +} + +/** + * A component to add draw controls to a map. + * IDrawControlsRef allows other components outside of the map context to interact with layers on the map + * + * The props provide callbacks and options to interact with the draw controls + */ +const DrawControls2 = forwardRef((props, ref) => { + const { options, onLayerDelete, onLayerEdit, onLayerAdd } = props; + + const { map, layerContainer } = useLeafletContext(); + + /** + * Fetch the layer used by the draw controls. + * + * @return {*} {L.FeatureGroup} + */ + const getFeatureGroup = useCallback(() => { + if (!layerContainer || !(layerContainer instanceof L.FeatureGroup)) { + throw new Error('Failed to get draw feature group'); + } + + return layerContainer; + }, [layerContainer]); + + /** + * Build and return a drawing map control. + * + * @return {*} {L.Control.Draw} + */ + const getDrawControls = (): L.Control.Draw => { + const featureGroup = getFeatureGroup(); + + const drawOptions: L.Control.DrawConstructorOptions = { + edit: { + ...options?.edit, + featureGroup: featureGroup + } + }; + + drawOptions.draw = { ...options?.draw }; + + drawOptions.position = drawOptions?.position || 'topright'; + + return new L.Control.Draw(drawOptions); + }; + + /** + * Handle create events. + * + * @param {L.DrawEvents.Created} event + */ + const onDrawCreate = useCallback( + (event: L.DrawEvents.Created) => { + const featureGroup = getFeatureGroup(); + featureGroup.addLayer(event.layer); + + onLayerAdd(event, L.stamp(event.layer)); + }, + [getFeatureGroup, onLayerAdd] + ); + + /** + * Handle edit events. + */ + const onDrawEdit = useCallback( + (event: L.DrawEvents.Edited) => { + onLayerEdit(event); + }, + [onLayerEdit] + ); + + /** + * Handle delete events. + */ + const onDrawDelete = useCallback( + (event: L.DrawEvents.Deleted) => { + onLayerDelete(event); + }, + [onLayerDelete] + ); + + useEffect(() => { + // Remove any existing draw control event handlers + map.removeEventListener(L.Draw.Event.CREATED); + map.removeEventListener(L.Draw.Event.EDITED); + map.removeEventListener(L.Draw.Event.DELETED); + + // Register draw control event handlers + map.on(L.Draw.Event.CREATED, onDrawCreate as L.LeafletEventHandlerFn); + map.on(L.Draw.Event.EDITED, onDrawEdit as L.LeafletEventHandlerFn); + map.on(L.Draw.Event.DELETED, onDrawDelete as L.LeafletEventHandlerFn); + }, [map, onDrawCreate, onDrawDelete, onDrawEdit]); + + const drawControlsRef = useRef(getDrawControls()); + + useEffect(() => { + // Add draw controls to the map + drawControlsRef.current.addTo(map); + }, [map]); + + // Populate the forward ref + useImperativeHandle( + ref, + () => ({ + addLayer: (feature: Feature) => { + const featureGroup = getFeatureGroup(); + + L.geoJSON(feature, { + pointToLayer: (feature, latlng) => { + if (feature.properties?.radius) { + return new L.Circle([latlng.lat, latlng.lng], feature.properties.radius); + } + + return new L.Marker([latlng.lat, latlng.lng]); + }, + onEachFeature: function (_feature, layer) { + featureGroup.addLayer(layer); + } + }); + }, + deleteLayer: (layerId: number) => { + const featureGroup = getFeatureGroup(); + featureGroup.removeLayer(layerId); + } + }), + [getFeatureGroup] + ); + + return null; +}); + +export default DrawControls2; diff --git a/app/src/components/map/components/ImportBoundaryDialog.tsx b/app/src/components/map/components/ImportBoundaryDialog.tsx new file mode 100644 index 0000000000..7a60939eb7 --- /dev/null +++ b/app/src/components/map/components/ImportBoundaryDialog.tsx @@ -0,0 +1,38 @@ +import Alert from '@mui/material/Alert'; +import Box from '@mui/material/Box'; +import ComponentDialog from 'components/dialog/ComponentDialog'; +import FileUpload from 'components/file-upload/FileUpload'; +import { ProjectSurveyAttachmentValidExtensions } from 'constants/attachments'; +import { Feature } from 'geojson'; +import { boundaryUploadHelper } from 'utils/mapBoundaryUploadHelpers'; + +export interface IImportBoundaryDialogProps { + isOpen: boolean; + onClose: () => void; + onSuccess: (features: Feature[]) => void; + onFailure: (message: string) => void; +} + +const ImportBoundaryDialog = (props: IImportBoundaryDialogProps) => { + const { isOpen, onClose, onSuccess, onFailure } = props; + return ( + + + + If importing a shapefile, it must be configured with a valid projection. + + + + + ); +}; + +export default ImportBoundaryDialog; diff --git a/app/src/components/map/components/RegionSelector.tsx b/app/src/components/map/components/RegionSelector.tsx new file mode 100644 index 0000000000..d55b585c52 --- /dev/null +++ b/app/src/components/map/components/RegionSelector.tsx @@ -0,0 +1,67 @@ +import Autocomplete from '@mui/material/Autocomplete'; +import TextField from '@mui/material/TextField'; + +export interface IRegionOption { + key: string; + name: string; +} + +export interface IRegionSelectorProps { + selectedRegion: IRegionOption | null; + onRegionSelected: (data: IRegionOption | null) => void; +} + +export const RegionSelector = (props: IRegionSelectorProps) => { + const regions: IRegionOption[] = [ + { + key: 'pub:WHSE_WILDLIFE_MANAGEMENT.WAA_WILDLIFE_MGMT_UNITS_SVW', + name: 'Wildlife Management Units' + }, + { + key: 'pub:WHSE_TANTALIS.TA_PARK_ECORES_PA_SVW', + name: 'Parks and EcoRegions' + }, + { + key: 'pub:WHSE_ADMIN_BOUNDARIES.ADM_NR_REGIONS_SPG', + name: 'NRM Regional Boundaries' + } + ]; + + const handleOnChange = (selected: IRegionOption | null) => { + props.onRegionSelected(selected); + }; + + const handleCheckOptionEquality = (option: IRegionOption, value: IRegionOption) => { + return option.key === value.key; + }; + + return ( + option.name} + isOptionEqualToValue={handleCheckOptionEquality} + renderInput={(params) => ( + + )} + onChange={(_, option) => { + handleOnChange(option); + }} + sx={{ + width: 250, + '& .MuiInputBase-root': { + fontSize: '0.875rem' + } + }} + /> + ); +}; diff --git a/app/src/components/map/components/StaticLayers.tsx b/app/src/components/map/components/StaticLayers.tsx index 3f8421afb0..65541b6a38 100644 --- a/app/src/components/map/components/StaticLayers.tsx +++ b/app/src/components/map/components/StaticLayers.tsx @@ -1,5 +1,5 @@ import { Feature } from 'geojson'; -import * as L from 'leaflet'; +import L from 'leaflet'; import React, { ReactElement } from 'react'; import { FeatureGroup, diff --git a/app/src/components/map/wfs-utils.tsx b/app/src/components/map/wfs-utils.tsx index 992718cc2d..c4f000444c 100644 --- a/app/src/components/map/wfs-utils.tsx +++ b/app/src/components/map/wfs-utils.tsx @@ -1,10 +1,31 @@ import { Feature } from 'geojson'; +export const layerNameHandler: Record = { + 'pub:WHSE_WILDLIFE_MANAGEMENT.WAA_WILDLIFE_MGMT_UNITS_SVW': (feature: Feature) => { + if (!feature?.properties) { + return 'Unparsable Feature'; + } + return `${feature.properties.WILDLIFE_MGMT_UNIT_ID} - ${feature.properties.GAME_MANAGEMENT_ZONE_ID} - ${feature.properties.GAME_MANAGEMENT_ZONE_NAME}`; + }, + 'pub:WHSE_TANTALIS.TA_PARK_ECORES_PA_SVW': (feature: Feature) => { + if (!feature?.properties) { + return 'Unparsable Feature'; + } + return `${feature.properties.PROTECTED_LANDS_NAME} - ${feature.properties.PROTECTED_LANDS_DESIGNATION}`; + }, + 'pub:WHSE_ADMIN_BOUNDARIES.ADM_NR_REGIONS_SPG': (feature: Feature) => { + if (!feature?.properties) { + return 'Unparsable Feature'; + } + return feature.properties.REGION_NAME; + } +}; + export const layerContentHandlers: Record = { 'pub:WHSE_WILDLIFE_MANAGEMENT.WAA_WILDLIFE_MGMT_UNITS_SVW': { featureKeyHandler: (feature: Feature) => feature?.properties?.OBJECTID, popupContentHandler: (feature: Feature) => { - if (!feature || !feature.properties) { + if (!feature?.properties) { return { tooltip: 'Unparsable Feature', content: [] }; } @@ -30,7 +51,7 @@ export const layerContentHandlers: Record = { 'pub:WHSE_TANTALIS.TA_PARK_ECORES_PA_SVW': { featureKeyHandler: (feature: Feature) => feature?.properties?.OBJECTID, popupContentHandler: (feature: Feature) => { - if (!feature || !feature.properties) { + if (!feature?.properties) { return { tooltip: 'Unparsable Feature', content: [] }; } @@ -53,7 +74,7 @@ export const layerContentHandlers: Record = { 'pub:WHSE_ADMIN_BOUNDARIES.ADM_NR_REGIONS_SPG': { featureKeyHandler: (feature: Feature) => feature?.properties?.OBJECTID, popupContentHandler: (feature: Feature) => { - if (!feature || !feature.properties) { + if (!feature?.properties) { return { tooltip: 'Unparsable Feature', content: [] }; } diff --git a/app/src/components/publish/PublishSurveyDialog.tsx b/app/src/components/publish/PublishSurveyDialog.tsx index 54bcec7fc9..1ae70e547a 100644 --- a/app/src/components/publish/PublishSurveyDialog.tsx +++ b/app/src/components/publish/PublishSurveyDialog.tsx @@ -5,7 +5,7 @@ import { SubmitSurveyBiohubI18N } from 'constants/i18n'; import { SUBMISSION_STATUS_TYPE } from 'constants/submissions'; import { SurveyContext } from 'contexts/surveyContext'; import { useBiohubApi } from 'hooks/useBioHubApi'; -import { ISurveyObservationData } from 'interfaces/useObservationApi.interface'; +import { ISurveyObservationData } from 'interfaces/useDwcaApi.interface'; import { ISurveySubmitForm } from 'interfaces/usePublishApi.interface'; import { ISurveySummaryData } from 'interfaces/useSummaryResultsApi.interface'; import { IGetSurveyAttachment, IGetSurveyReportAttachment } from 'interfaces/useSurveyApi.interface'; diff --git a/app/src/components/publish/SurveySubmissionAlertBar.tsx b/app/src/components/publish/SurveySubmissionAlertBar.tsx index f36c08bc07..c0e54c4ff1 100644 --- a/app/src/components/publish/SurveySubmissionAlertBar.tsx +++ b/app/src/components/publish/SurveySubmissionAlertBar.tsx @@ -5,7 +5,7 @@ import AlertTitle from '@mui/material/AlertTitle'; import Box from '@mui/material/Box'; import IconButton from '@mui/material/IconButton'; import { SurveyContext } from 'contexts/surveyContext'; -import { IGetObservationSubmissionResponse } from 'interfaces/useObservationApi.interface'; +import { IGetObservationSubmissionResponse } from 'interfaces/useDwcaApi.interface'; import { IGetSummaryResultsResponse } from 'interfaces/useSummaryResultsApi.interface'; import { IGetSurveyAttachmentsResponse } from 'interfaces/useSurveyApi.interface'; import { useContext, useState } from 'react'; diff --git a/app/src/contexts/observationsContext.tsx b/app/src/contexts/observationsContext.tsx index 27c6dd7d45..03c346a782 100644 --- a/app/src/contexts/observationsContext.tsx +++ b/app/src/contexts/observationsContext.tsx @@ -1,4 +1,4 @@ -import { GridRowModelUpdate, useGridApiRef } from '@mui/x-data-grid'; +import { GridRowId, GridRowModelUpdate, GridValidRowModel, useGridApiRef } from '@mui/x-data-grid'; import { GridApiCommunity } from '@mui/x-data-grid/internals'; import { IErrorDialogProps } from 'components/dialog/ErrorDialog'; import { ObservationsTableI18N } from 'constants/i18n'; @@ -7,21 +7,21 @@ import { APIError } from 'hooks/api/useAxios'; import { useBiohubApi } from 'hooks/useBioHubApi'; import useDataLoader, { DataLoader } from 'hooks/useDataLoader'; import { IGetSurveyObservationsResponse } from 'interfaces/useObservationApi.interface'; -import { createContext, PropsWithChildren, useCallback, useContext, useState } from 'react'; +import { createContext, PropsWithChildren, useCallback, useContext, useEffect, useState } from 'react'; import { v4 as uuidv4 } from 'uuid'; import { SurveyContext } from './surveyContext'; export interface IObservationRecord { - survey_observation_id: number | undefined; - wldtaxonomic_units_id: number | undefined; - survey_sample_site_id: number | undefined; - survey_sample_method_id: number | undefined; - survey_sample_period_id: number | undefined; - count: number | undefined; - observation_date: Date | undefined; - observation_time: string | undefined; - latitude: number | undefined; - longitude: number | undefined; + survey_observation_id: number; + wldtaxonomic_units_id: number; + survey_sample_site_id: number; + survey_sample_method_id: number; + survey_sample_period_id: number; + count: number | null; + observation_date: Date; + observation_time: string; + latitude: number | null; + longitude: number | null; } export interface IObservationTableRow extends Partial { @@ -40,10 +40,9 @@ export type IObservationsContext = { */ createNewRecord: () => void; /** - * Commits all observation rows to the database, including those that are currently being edited in the Observation - * Table + * Transitions all rows in edit mode to view mode and triggers a commit of all observation rows to the database. */ - saveRecords: () => Promise; + stopEditAndSaveRows: () => void; /** * Reverts all changes made to observation records within the Observation Table */ @@ -80,6 +79,10 @@ export type IObservationsContext = { * A setState setter for the `initialRows` */ setInitialRows: React.Dispatch>; + /** + * Indicates if the data is in the process of being persisted to the server. + */ + isSaving: boolean; }; export const ObservationsContext = createContext({ @@ -92,38 +95,41 @@ export const ObservationsContext = createContext({ hasUnsavedChanges: () => false, createNewRecord: () => {}, revertRecords: () => Promise.resolve(), - saveRecords: () => Promise.resolve(), - refreshRecords: () => Promise.resolve() + stopEditAndSaveRows: () => {}, + refreshRecords: () => Promise.resolve(), + isSaving: false }); export const ObservationsContextProvider = (props: PropsWithChildren>) => { const { projectId, surveyId } = useContext(SurveyContext); const observationsDataLoader = useDataLoader(() => biohubApi.observation.getObservationRecords(projectId, surveyId)); + const _muiDataGridApiRef = useGridApiRef(); + const biohubApi = useBiohubApi(); const dialogContext = useContext(DialogContext); - const surveyContext = useContext(SurveyContext); const [unsavedRecordIds, _setUnsavedRecordIds] = useState([]); const [initialRows, setInitialRows] = useState([]); - const _hideErrorDialog = () => { - dialogContext.setErrorDialog({ - open: false - }); - }; + const [rowIdsToSave, setRowIdsToSave] = useState([]); + const [isStoppingEdit, setIsStoppingEdit] = useState(false); + const [isSaving, setIsSaving] = useState(false); - const _showErrorDialog = (textDialogProps?: Partial) => { - dialogContext.setErrorDialog({ - ...textDialogProps, - onOk: _hideErrorDialog, - onClose: _hideErrorDialog, - dialogTitle: ObservationsTableI18N.submitRecordsErrorDialogTitle, - dialogText: ObservationsTableI18N.submitRecordsErrorDialogText, - open: true - }); - }; + const _showErrorDialog = useCallback( + (textDialogProps?: Partial) => { + dialogContext.setErrorDialog({ + ...textDialogProps, + onOk: () => dialogContext.setErrorDialog({ open: false }), + onClose: () => dialogContext.setErrorDialog({ open: false }), + dialogTitle: ObservationsTableI18N.submitRecordsErrorDialogTitle, + dialogText: ObservationsTableI18N.submitRecordsErrorDialogText, + open: true + }); + }, + [dialogContext] + ); observationsDataLoader.load(); @@ -134,6 +140,9 @@ export const ObservationsContextProvider = (props: PropsWithChildren { const id = uuidv4(); markRecordWithUnsavedChanges(id); @@ -142,57 +151,57 @@ export const ObservationsContextProvider = (props: PropsWithChildren { - return Array.from(_muiDataGridApiRef.current.getRowModels?.()?.values()) as IObservationTableRow[]; - }; - - const _getActiveRecords = (): IObservationTableRow[] => { - return _getRows().map((row) => { - const editRow = _muiDataGridApiRef.current.state.editRows[row.id]; + /** + * Transition all editable rows from edit mode to view mode. + */ + const stopEditAndSaveRows = () => { + if (isStoppingEdit) { + // Stop edit mode already in progress + return; + } - if (!editRow) { - return row; - } - return Object.entries(editRow).reduce( - (newRow, entry) => ({ ...row, ...newRow, _isModified: true, [entry[0]]: entry[1].value }), - {} - ); - }) as IObservationTableRow[]; - }; + setIsStoppingEdit(true); - const saveRecords = async () => { + // The ids of all rows in edit mode const editingIds = Object.keys(_muiDataGridApiRef.current.state.editRows); - editingIds.forEach((id) => _muiDataGridApiRef.current.stopRowEditMode({ id })); - - const { projectId, surveyId } = surveyContext; - const rows = _getActiveRecords(); - - try { - await biohubApi.observation.insertUpdateObservationRecords(projectId, surveyId, rows); - _setUnsavedRecordIds([]); - return refreshRecords(); - } catch (error) { - const apiError = error as APIError; - _showErrorDialog({ dialogErrorDetails: apiError.errors }); + + if (!editingIds.length) { + // No rows in edit mode, nothing to stop or save + setIsStoppingEdit(false); return; } + + // Transition all rows in edit mode to view mode + for (const id of editingIds) { + _muiDataGridApiRef.current.stopRowEditMode({ id }); + } + + // Store ids of rows that were in edit mode + setRowIdsToSave(editingIds); }; + /** + * Transition all rows tracked by `rowIdsToSave` to view mode. + */ + const revertAllRowsEditMode = useCallback(() => { + rowIdsToSave.forEach((id) => _muiDataGridApiRef.current.startRowEditMode({ id })); + }, [_muiDataGridApiRef, rowIdsToSave]); + // TODO deleting a row and then calling method currently fails to recover said row... const revertRecords = async () => { // Mark all rows as saved @@ -206,18 +215,82 @@ export const ObservationsContextProvider = (props: PropsWithChildren => { + const refreshRecords = useCallback(async () => { return observationsDataLoader.refresh(); - }; + }, [observationsDataLoader]); const hasUnsavedChanges = useCallback(() => { return unsavedRecordIds.length > 0; }, [unsavedRecordIds]); + /** + * Send all observation rows to the backend. + * + * @param {GridValidRowModel[]} rowsToSave + */ + const saveRecords = useCallback( + async (rowsToSave: GridValidRowModel[]) => { + try { + await biohubApi.observation.insertUpdateObservationRecords( + projectId, + surveyId, + rowsToSave as IObservationTableRow[] + ); + setRowIdsToSave([]); + _setUnsavedRecordIds([]); + return refreshRecords(); + } catch (error) { + revertAllRowsEditMode(); + const apiError = error as APIError; + _showErrorDialog({ dialogErrorDetails: apiError.errors }); + return; + } finally { + setIsSaving(false); + } + }, + [_showErrorDialog, biohubApi.observation, projectId, refreshRecords, revertAllRowsEditMode, surveyId] + ); + + useEffect(() => { + if (!_muiDataGridApiRef?.current?.getRowModels) { + // Data grid is not fully initialized + return; + } + + if (!isStoppingEdit) { + // Stop edit mode not in progress, cannot save yet + return; + } + + if (!rowIdsToSave.length) { + // No rows to save + return; + } + + if (isSaving) { + // Saving already in progress + return; + } + + if (rowIdsToSave.some((id) => _muiDataGridApiRef.current.getRowMode(id) === 'edit')) { + // Not all rows have transitioned to view mode, cannot save yet + return; + } + + // All rows have transitioned to view mode + setIsStoppingEdit(false); + + // Start saving records + setIsSaving(true); + const rowModels = _muiDataGridApiRef.current.getRowModels(); + const rowValues = Array.from(rowModels, ([_, value]) => value); + saveRecords(rowValues); + }, [_muiDataGridApiRef, saveRecords, isSaving, isStoppingEdit, rowIdsToSave]); + const observationsContext: IObservationsContext = { createNewRecord, revertRecords, - saveRecords, + stopEditAndSaveRows, refreshRecords, hasUnsavedChanges, markRecordWithUnsavedChanges, @@ -225,7 +298,8 @@ export const ObservationsContextProvider = (props: PropsWithChildren{props.children}; diff --git a/app/src/contexts/surveyContext.tsx b/app/src/contexts/surveyContext.tsx index d3b6c19b9e..625747f504 100644 --- a/app/src/contexts/surveyContext.tsx +++ b/app/src/contexts/surveyContext.tsx @@ -1,6 +1,6 @@ import { useBiohubApi } from 'hooks/useBioHubApi'; import useDataLoader, { DataLoader } from 'hooks/useDataLoader'; -import { IGetObservationSubmissionResponse } from 'interfaces/useObservationApi.interface'; +import { IGetObservationSubmissionResponse } from 'interfaces/useDwcaApi.interface'; import { IGetSummaryResultsResponse } from 'interfaces/useSummaryResultsApi.interface'; import { IGetSampleSiteResponse, @@ -95,7 +95,7 @@ export const SurveyContext = createContext({ export const SurveyContextProvider = (props: PropsWithChildren>) => { const biohubApi = useBiohubApi(); const surveyDataLoader = useDataLoader(biohubApi.survey.getSurveyForView); - const observationDataLoader = useDataLoader(biohubApi.observation.getObservationSubmission); + const observationDataLoader = useDataLoader(biohubApi.dwca.getObservationSubmission); const summaryDataLoader = useDataLoader(biohubApi.survey.getSurveySummarySubmission); const artifactDataLoader = useDataLoader(biohubApi.survey.getSurveyAttachments); const sampleSiteDataLoader = useDataLoader(biohubApi.samplingSite.getSampleSites); diff --git a/app/src/features/projects/view/components/GeneralInformation.tsx b/app/src/features/projects/view/components/GeneralInformation.tsx index 3bf525033a..beb7482634 100644 --- a/app/src/features/projects/view/components/GeneralInformation.tsx +++ b/app/src/features/projects/view/components/GeneralInformation.tsx @@ -33,7 +33,7 @@ const GeneralInformation = () => { return ( - + Program @@ -55,7 +55,7 @@ const GeneralInformation = () => { ) : ( <> - Start Date:{' '} + Start Date: {getFormattedDateRangeString(DATE_FORMAT.ShortMediumDateFormat, projectData.project.start_date)} )} diff --git a/app/src/features/surveys/CreateSurveyPage.test.tsx b/app/src/features/surveys/CreateSurveyPage.test.tsx index 854e764ab1..5dac7e5099 100644 --- a/app/src/features/surveys/CreateSurveyPage.test.tsx +++ b/app/src/features/surveys/CreateSurveyPage.test.tsx @@ -95,7 +95,7 @@ describe.skip('CreateSurveyPage', () => { mockUseApi.project.getProjectForView.mockResolvedValue(getProjectForViewResponse); mockUseApi.codes.getAllCodeSets.mockResolvedValue(codes); mockUseApi.survey.getSurveyPermits.mockResolvedValue({ - permits: [{ id: 1, permit_number: 'abcd1', permit_type: 'Wildlife permit' }] + permits: [{ permit_id: 1, permit_number: 'abcd1', permit_type: 'Wildlife permit' }] }); const { getByText, getAllByText } = renderContainer(); @@ -134,8 +134,8 @@ describe.skip('CreateSurveyPage', () => { mockUseApi.survey.getSurveyPermits.mockResolvedValue({ permits: [ - { id: 1, permit_number: '123', permit_type: 'Scientific' }, - { id: 2, permit_number: '456', permit_type: 'Wildlife' } + { permit_id: 1, permit_number: '123', permit_type: 'Scientific' }, + { permit_id: 2, permit_number: '456', permit_type: 'Wildlife' } ] }); @@ -170,8 +170,8 @@ describe.skip('CreateSurveyPage', () => { mockUseApi.codes.getAllCodeSets.mockResolvedValue(codes); mockUseApi.survey.getSurveyPermits.mockResolvedValue({ permits: [ - { id: 1, permit_number: '123', permit_type: 'Scientific' }, - { id: 2, permit_number: '456', permit_type: 'Wildlife' } + { permit_id: 1, permit_number: '123', permit_type: 'Scientific' }, + { permit_id: 2, permit_number: '456', permit_type: 'Wildlife' } ] }); mockUseApi.taxonomy.getSpeciesFromIds.mockResolvedValue({ @@ -217,8 +217,8 @@ describe.skip('CreateSurveyPage', () => { mockUseApi.codes.getAllCodeSets.mockResolvedValue(codes); mockUseApi.survey.getSurveyPermits.mockResolvedValue({ permits: [ - { id: 1, permit_number: '123', permit_type: 'Scientific' }, - { id: 2, permit_number: '456', permit_type: 'Wildlife' } + { permit_id: 1, permit_number: '123', permit_type: 'Scientific' }, + { permit_id: 2, permit_number: '456', permit_type: 'Wildlife' } ] }); mockUseApi.taxonomy.getSpeciesFromIds.mockResolvedValue({ diff --git a/app/src/features/surveys/CreateSurveyPage.tsx b/app/src/features/surveys/CreateSurveyPage.tsx index 95387582da..45e1b0711b 100644 --- a/app/src/features/surveys/CreateSurveyPage.tsx +++ b/app/src/features/surveys/CreateSurveyPage.tsx @@ -42,7 +42,7 @@ import PurposeAndMethodologyForm, { PurposeAndMethodologyInitialValues, PurposeAndMethodologyYupSchema } from './components/PurposeAndMethodologyForm'; -import SamplingMethodsForm from './components/SamplingMethodsForm'; +import SamplingStrategyForm from './components/SamplingStrategyForm'; import StudyAreaForm, { SurveyLocationInitialValues, SurveyLocationYupSchema } from './components/StudyAreaForm'; import { SurveyBlockInitialValues } from './components/SurveyBlockSection'; import SurveyFundingSourceForm, { @@ -386,9 +386,9 @@ const CreateSurveyPage = () => { } + component={} /> diff --git a/app/src/features/surveys/SurveyRouter.tsx b/app/src/features/surveys/SurveyRouter.tsx index 7268b22d41..8fc5a80639 100644 --- a/app/src/features/surveys/SurveyRouter.tsx +++ b/app/src/features/surveys/SurveyRouter.tsx @@ -5,6 +5,7 @@ import React from 'react'; import { Redirect, Switch } from 'react-router'; import RouteWithTitle from 'utils/RouteWithTitle'; import { getTitle } from 'utils/Utils'; +import { SurveyLocationPage } from './components/locations/SurveyLocationPage'; import EditSurveyPage from './edit/EditSurveyPage'; import SamplingSiteEditPage from './observations/sampling-sites/edit/SamplingSiteEditPage'; import SamplingSitePage from './observations/sampling-sites/SamplingSitePage'; @@ -32,6 +33,7 @@ const SurveyRouter: React.FC = () => { + {/* Sample Site Routes */} @@ -43,6 +45,11 @@ const SurveyRouter: React.FC = () => { + {/* Survey Locations */} + + + + { /> - + Time Periods - + {item.periods.map((period) => ( @@ -195,7 +202,7 @@ const SamplingMethodForm = () => { sx={{ mt: 1 }} - data-testid="sample-method-add-button" + data-testid="create-sample-method-add-button" variant="outlined" color="primary" title="Add Sample Method" diff --git a/app/src/features/surveys/components/SamplingMethodsForm.tsx b/app/src/features/surveys/components/SamplingStrategyForm.tsx similarity index 95% rename from app/src/features/surveys/components/SamplingMethodsForm.tsx rename to app/src/features/surveys/components/SamplingStrategyForm.tsx index 31e4a6e69b..1d5653aa6d 100644 --- a/app/src/features/surveys/components/SamplingMethodsForm.tsx +++ b/app/src/features/surveys/components/SamplingStrategyForm.tsx @@ -6,7 +6,7 @@ import SurveyBlockSection from './SurveyBlockSection'; import SurveySiteSelectionForm from './SurveySiteSelectionForm'; import SurveyStratumForm from './SurveyStratumForm'; -const SamplingMethodsForm = () => { +const SamplingStrategyForm = () => { const [showStratumForm, setShowStratumForm] = useState(false); return ( @@ -53,4 +53,4 @@ const SamplingMethodsForm = () => { ); }; -export default SamplingMethodsForm; +export default SamplingStrategyForm; diff --git a/app/src/features/surveys/components/StudyAreaForm.test.tsx b/app/src/features/surveys/components/StudyAreaForm.test.tsx index ad0079d7e2..c5b142976e 100644 --- a/app/src/features/surveys/components/StudyAreaForm.test.tsx +++ b/app/src/features/surveys/components/StudyAreaForm.test.tsx @@ -1,5 +1,4 @@ import { cleanup } from '@testing-library/react-hooks'; -import MapBoundary from 'components/boundary/MapBoundary'; import StudyAreaForm, { ISurveyLocationForm, SurveyLocationInitialValues, @@ -7,14 +6,15 @@ import StudyAreaForm, { } from 'features/surveys/components/StudyAreaForm'; import { Formik } from 'formik'; import { render, waitFor } from 'test-helpers/test-utils'; +import { SurveyAreaMapControl } from './locations/SurveyAreaMapControl'; -// Mock MapBoundary component -jest.mock('../../../components/boundary/MapBoundary'); -const mockMapBoundary = MapBoundary as jest.Mock; +// Mock Map Controller component +jest.mock('./locations/SurveyAreaMapControl'); +const mockMap = SurveyAreaMapControl as jest.Mock; describe('Study Area Form', () => { beforeEach(() => { - mockMapBoundary.mockImplementation(() =>
); + mockMap.mockImplementation(() =>
); }); afterEach(() => { @@ -22,7 +22,7 @@ describe('Study Area Form', () => { }); it('renders correctly with default values', async () => { - const { getByLabelText, getByTestId } = render( + const { getByTestId } = render( { ); await waitFor(() => { - // Assert MapBoundary was rendered with the right propsF - expect(MapBoundary).toHaveBeenCalledWith( + expect(SurveyAreaMapControl).toHaveBeenCalledWith( { - name: 'locations[0].geojson', - title: 'Study Area Boundary', - mapId: 'study_area_form_map', - bounds: undefined, - formikProps: expect.objectContaining({ values: SurveyLocationInitialValues }) + map_id: 'study_area_map', + formik_key: 'locations', + formik_props: expect.objectContaining({ values: SurveyLocationInitialValues }), + draw_controls_ref: { current: null } }, expect.anything() ); - // Assert survey area name field is visible and populated correctly - expect(getByLabelText('Survey Area Name', { exact: false })).toBeVisible(); - expect(getByTestId('locations[0].name')).toHaveValue(''); + + expect(getByTestId('study-area-list')).toBeVisible(); }); }); @@ -55,6 +52,7 @@ describe('Study Area Form', () => { const existingFormValues: ISurveyLocationForm = { locations: [ { + survey_location_id: 1, name: 'a study area name', description: 'a study area description', geojson: [ @@ -73,7 +71,7 @@ describe('Study Area Form', () => { ] }; - const { getByLabelText, getByTestId } = render( + const { getByTestId, findByText } = render( { ); - await waitFor(() => { - // Assert MapBoundary was rendered with the right propsF - expect(MapBoundary).toHaveBeenCalledWith( + await waitFor(async () => { + // Assert MapBoundary was rendered with the right props + expect(SurveyAreaMapControl).toHaveBeenCalledWith( { - name: 'locations[0].geojson', - title: 'Study Area Boundary', - mapId: 'study_area_form_map', - bounds: undefined, - formikProps: expect.objectContaining({ values: existingFormValues }) + map_id: 'study_area_map', + formik_key: 'locations', + formik_props: expect.objectContaining({ values: existingFormValues }), + draw_controls_ref: { current: null } }, expect.anything() ); - // Assert survey area name field is visible and populated correctly - expect(getByLabelText('Survey Area Name', { exact: false })).toBeVisible(); - expect(getByTestId('locations[0].name')).toHaveValue('a study area name'); + + expect(getByTestId('study-area-list')).toBeVisible(); + expect(await findByText('a study area description')).toBeVisible(); }); }); }); diff --git a/app/src/features/surveys/components/StudyAreaForm.tsx b/app/src/features/surveys/components/StudyAreaForm.tsx index 53bab39238..e1aba75389 100644 --- a/app/src/features/surveys/components/StudyAreaForm.tsx +++ b/app/src/features/surveys/components/StudyAreaForm.tsx @@ -1,39 +1,42 @@ -import Box from '@mui/material/Box'; -import MapBoundary from 'components/boundary/MapBoundary'; -import CustomTextField from 'components/fields/CustomTextField'; +import EditDialog from 'components/dialog/EditDialog'; +import { IDrawControlsRef } from 'components/map/components/DrawControls2'; import { useFormikContext } from 'formik'; import { Feature } from 'geojson'; +import { createRef, useMemo, useState } from 'react'; import yup from 'utils/YupSchema'; +import { SurveyAreaList } from './locations/SurveyAreaList'; +import SurveyAreaLocationForm from './locations/SurveyAreaLocationForm'; +import { SurveyAreaMapControl } from './locations/SurveyAreaMapControl'; +export interface ISurveyLocation { + survey_location_id?: number; + name: string; + description: string; + geojson: Feature[]; + revision_count?: number; + // This is an id meant for the front end only. This is is set if the geojson was drawn by the user (on the leaflet map) vs imported (file upload or region selector) + // Locations drawn by the user should be editable in the leaflet map using the draw tools available + // Any uploaded or selected regions should not be editable and be placed in the 'static' layer on the map + leaflet_id?: number; +} export interface ISurveyLocationForm { - locations: { - survey_location_id?: number; - name: string; - description: string; - geojson: Feature[]; - revision_count?: number; - }[]; + locations: ISurveyLocation[]; } export const SurveyLocationInitialValues: ISurveyLocationForm = { - locations: [ - { - survey_location_id: null as unknown as number, - name: '', - // TODO description is temporarily hardcoded until the new UI to populate this field is implemented in - // https://apps.nrs.gov.bc.ca/int/jira/browse/SIMSBIOHUB-219 - description: 'Insert description here', - geojson: [], - revision_count: 0 - } - ] + locations: [] }; +export const SurveyLocationDetailsYupSchema = yup.object({ + name: yup.string().max(100, 'Name cannot exceed 100 characters').required('Name is Required'), + description: yup.string().max(250, 'Description cannot exceed 250 characters').default('') +}); + export const SurveyLocationYupSchema = yup.object({ locations: yup.array( yup.object({ name: yup.string().max(100, 'Name cannot exceed 100 characters').required('Name is Required'), - description: yup.string().max(250, 'Description cannot exceed 250 characters'), + description: yup.string().max(250, 'Description cannot exceed 250 characters').default(''), geojson: yup.array().min(1, 'A geometry is required').required('A geometry is required') }) ) @@ -46,25 +49,88 @@ export const SurveyLocationYupSchema = yup.object({ */ const StudyAreaForm = () => { const formikProps = useFormikContext(); + const { handleSubmit, values, setFieldValue } = formikProps; + const [isOpen, setIsOpen] = useState(false); + const [currentIndex, setCurrentIndex] = useState(undefined); + const drawRef = createRef(); + + const locationDialogFormData = useMemo(() => { + // Initial Dialog Data + const dialogData = { + name: '', + description: '' + }; + + if (currentIndex !== undefined) { + dialogData.name = values.locations[currentIndex]?.name; + dialogData.description = values.locations[currentIndex]?.description; + } + return dialogData; + }, [currentIndex, values.locations]); + + const onOpen = () => { + setIsOpen(true); + }; + const onClose = () => { + setIsOpen(false); + setCurrentIndex(undefined); + }; + const onSave = (data: { name: string; description: string }) => { + setFieldValue(`locations[${currentIndex}].name`, data.name); + setFieldValue(`locations[${currentIndex}].description`, data.description); + }; + + const onDelete = (index: number) => { + // remove the item at index + const data = values.locations; + const locationData = data.splice(index, 1); + + // Use Draw Ref to remove editable layer from the map + locationData.forEach((item) => { + if (item.leaflet_id) { + drawRef.current?.deleteLayer(item.leaflet_id); + } + }); + + // set values + setFieldValue('locations', data); + }; - const { handleSubmit } = formikProps; return (
- - - - , + initialValues: locationDialogFormData, + validationSchema: SurveyLocationDetailsYupSchema + }} + dialogSaveButtonLabel="Save" + onCancel={() => { + onClose(); + }} + onSave={(formValues) => { + onSave(formValues); + onClose(); + }} + /> + + + + { + setCurrentIndex(index); + onOpen(); + }} + openDelete={onDelete} + data={values.locations} /> ); diff --git a/app/src/features/surveys/components/locations/StudyAreaMap.tsx b/app/src/features/surveys/components/locations/StudyAreaMap.tsx new file mode 100644 index 0000000000..03be7faef1 --- /dev/null +++ b/app/src/features/surveys/components/locations/StudyAreaMap.tsx @@ -0,0 +1,119 @@ +import Button from '@mui/material/Button'; +import BaseLayerControls from 'components/map/components/BaseLayerControls'; +import { GetMapBounds, IMapBoundsOnChange, SetMapBounds } from 'components/map/components/Bounds'; +import DrawControls2, { IDrawControlsProps, IDrawControlsRef } from 'components/map/components/DrawControls2'; +import FullScreenScrollingEventHandler from 'components/map/components/FullScreenScrollingEventHandler'; +import StaticLayers, { IStaticLayer } from 'components/map/components/StaticLayers'; +import { layerContentHandlers } from 'components/map/wfs-utils'; +import WFSFeatureGroup from 'components/map/WFSFeatureGroup'; +import { ALL_OF_BC_BOUNDARY } from 'constants/spatial'; +import { Feature } from 'geojson'; +import L, { LatLngBoundsExpression } from 'leaflet'; +import 'leaflet-fullscreen/dist/leaflet.fullscreen.css'; +import 'leaflet-fullscreen/dist/Leaflet.fullscreen.js'; +import iconRetina from 'leaflet/dist/images/marker-icon-2x.png'; +import icon from 'leaflet/dist/images/marker-icon.png'; +import iconShadow from 'leaflet/dist/images/marker-shadow.png'; +import 'leaflet/dist/leaflet.css'; +import { createRef } from 'react'; +import { FeatureGroup, LayersControl, MapContainer as LeafletMapContainer } from 'react-leaflet'; + +// Get leaflet icons working +//@ts-ignore +delete L.Icon.Default.prototype._getIconUrl; +L.Icon.Default.mergeOptions({ + iconRetinaUrl: iconRetina, + iconUrl: icon, + shadowUrl: iconShadow +}); + +export interface INonEditableGeometries { + feature: Feature; + popupComponent?: JSX.Element; +} + +export interface IClusteredPointGeometries { + coordinates: number[]; + popupComponent?: JSX.Element; +} + +export interface IMapContainerProps { + mapId: string; + staticLayers?: IStaticLayer[]; + drawControls?: IDrawControlsProps; + scrollWheelZoom?: boolean; + zoom?: number; + bounds?: LatLngBoundsExpression; + selectedLayer?: string; + onDrawFeature: (geometry: Feature) => void; + onLayerFeature: (geometry: Feature) => void; + onBoundsChange?: IMapBoundsOnChange; +} + +const StudyAreaMap = (props: IMapContainerProps) => { + const { + mapId, + staticLayers, + drawControls, + scrollWheelZoom, + zoom, + bounds, + selectedLayer, + onLayerFeature, + onBoundsChange + } = props; + + const drawRef = createRef(); + + return ( + <> + + + + + + onBoundsChange?.(newBounds, newZoom)} /> + + + {}} + onLayerEdit={(_) => {}} + onLayerDelete={(_) => {}} + /> + + + {selectedLayer && ( + item.features.map((feature) => feature.geoJSON))} + onSelectGeometry={onLayerFeature} + /> + )} + + + + + + + + ); +}; + +export default StudyAreaMap; diff --git a/app/src/features/surveys/components/locations/SurveyAreaList.tsx b/app/src/features/surveys/components/locations/SurveyAreaList.tsx new file mode 100644 index 0000000000..57231472b1 --- /dev/null +++ b/app/src/features/surveys/components/locations/SurveyAreaList.tsx @@ -0,0 +1,117 @@ +import { mdiPencilOutline, mdiTrashCanOutline } from '@mdi/js'; +import Icon from '@mdi/react'; +import MoreVertIcon from '@mui/icons-material/MoreVert'; +import Box from '@mui/material/Box'; +import Card from '@mui/material/Card'; +import CardHeader from '@mui/material/CardHeader'; +import Collapse from '@mui/material/Collapse'; +import { grey } from '@mui/material/colors'; +import IconButton from '@mui/material/IconButton'; +import ListItemIcon from '@mui/material/ListItemIcon'; +import Menu, { MenuProps } from '@mui/material/Menu'; +import MenuItem from '@mui/material/MenuItem'; +import { useState } from 'react'; +import TransitionGroup from 'react-transition-group/TransitionGroup'; +import { ISurveyLocation } from '../StudyAreaForm'; + +export interface ISurveyAreaListProps { + data: ISurveyLocation[]; + openEdit: (index: number) => void; + openDelete: (index: number) => void; +} + +export const SurveyAreaList = (props: ISurveyAreaListProps) => { + const { data, openEdit, openDelete } = props; + const [anchorEl, setAnchorEl] = useState(null); + const [currentItemIndex, setCurrentItemIndex] = useState(-1); + + const handleMenuClick = (event: React.MouseEvent, index: number) => { + setAnchorEl(event.currentTarget); + setCurrentItemIndex(index); + }; + + return ( + <> + {/* CONTEXT MENU */} + setAnchorEl(null)} + anchorEl={anchorEl} + anchorOrigin={{ + vertical: 'top', + horizontal: 'right' + }} + transformOrigin={{ + vertical: 'top', + horizontal: 'right' + }}> + { + if (currentItemIndex != null) { + openEdit(currentItemIndex); + } + setAnchorEl(null); + }}> + + + + Edit Details + + { + if (currentItemIndex != null) { + openDelete(currentItemIndex); + } + setAnchorEl(null); + }}> + + + + Remove + + + + + {data.map((item: ISurveyLocation, index: number) => { + return ( + + + ) => + handleMenuClick(event, index) + } + aria-label="settings"> + + + } + /> + + + ); + })} + + + + ); +}; diff --git a/app/src/features/surveys/components/locations/SurveyAreaLocationForm.tsx b/app/src/features/surveys/components/locations/SurveyAreaLocationForm.tsx new file mode 100644 index 0000000000..f86c0d1fcd --- /dev/null +++ b/app/src/features/surveys/components/locations/SurveyAreaLocationForm.tsx @@ -0,0 +1,30 @@ +import { Box } from '@mui/system'; +import CustomTextField from 'components/fields/CustomTextField'; + +export interface ISurveyAreaLocationForm { + name: string; + description: string; +} + +const SurveyAreaLocationForm = () => { + return ( +
+ + + + + + ); +}; + +export default SurveyAreaLocationForm; diff --git a/app/src/features/surveys/components/locations/SurveyAreaMapControl.tsx b/app/src/features/surveys/components/locations/SurveyAreaMapControl.tsx new file mode 100644 index 0000000000..2c9093f4ad --- /dev/null +++ b/app/src/features/surveys/components/locations/SurveyAreaMapControl.tsx @@ -0,0 +1,179 @@ +import { mdiTrayArrowUp } from '@mdi/js'; +import Icon from '@mdi/react'; +import Box from '@mui/material/Box'; +import Button from '@mui/material/Button'; +import Paper from '@mui/material/Paper'; +import BaseLayerControls from 'components/map/components/BaseLayerControls'; +import { SetMapBounds } from 'components/map/components/Bounds'; +import DrawControls2, { IDrawControlsRef } from 'components/map/components/DrawControls2'; +import FullScreenScrollingEventHandler from 'components/map/components/FullScreenScrollingEventHandler'; +import ImportBoundaryDialog from 'components/map/components/ImportBoundaryDialog'; +import { IRegionOption, RegionSelector } from 'components/map/components/RegionSelector'; +import StaticLayers from 'components/map/components/StaticLayers'; +import { layerContentHandlers, layerNameHandler } from 'components/map/wfs-utils'; +import WFSFeatureGroup from 'components/map/WFSFeatureGroup'; +import { FormikContextType } from 'formik'; +import { Feature, FeatureCollection } from 'geojson'; +import L, { DrawEvents, LatLngBoundsExpression } from 'leaflet'; +import 'leaflet/dist/leaflet.css'; +import { useEffect, useState } from 'react'; +import { FeatureGroup, LayersControl, MapContainer as LeafletMapContainer } from 'react-leaflet'; +import { calculateUpdatedMapBounds } from 'utils/mapBoundaryUploadHelpers'; +import { ISurveyLocation, ISurveyLocationForm } from '../StudyAreaForm'; + +export interface ISurveyAreMapControlProps { + map_id: string; + formik_key: string; + formik_props: FormikContextType; + draw_controls_ref: React.RefObject; +} + +export const SurveyAreaMapControl = (props: ISurveyAreMapControlProps) => { + const { map_id, formik_key, formik_props, draw_controls_ref } = props; + const { setFieldValue, setFieldError, values } = formik_props; + const [updatedBounds, setUpdatedBounds] = useState(undefined); + const [isOpen, setIsOpen] = useState(false); + const [selectedRegion, setSelectedRegion] = useState(null); + + useEffect(() => { + setUpdatedBounds(calculateUpdatedMapBounds(formik_props.values.locations.map((item) => item.geojson[0]))); + }, [formik_props.values.locations]); + + return ( + <> + setIsOpen(false)} + onSuccess={(features) => { + // Map features into form data + const formData = features.map((item: Feature, index) => { + return { + name: `Study Area ${index + 1}`, + description: '', + geojson: [item], + revision_count: 0 + }; + }); + setUpdatedBounds(calculateUpdatedMapBounds(features)); + setFieldValue(formik_key, [...values.locations, ...formData]); + }} + onFailure={(message) => { + setFieldError(formik_key, message); + }} + /> + + + + { + setSelectedRegion(data); + }} + /> + + + + + {/* Allow scroll wheel zoom when in full screen mode */} + + + {/* Programmatically set map bounds */} + + + + { + const feature: Feature = event.layer.toGeoJSON(); + if (feature.properties) { + feature.properties.layer_id = id; + } + const location: ISurveyLocation = { + name: `Drawn Location ${id}`, + description: '', + geojson: [feature], + revision_count: 0, + leaflet_id: id + }; + setFieldValue(formik_key, [...values.locations, location]); + }} + onLayerEdit={(event: DrawEvents.Edited) => { + event.layers.getLayers().forEach((item) => { + const layer_id = L.stamp(item); + const featureCollection = L.layerGroup([item]).toGeoJSON() as FeatureCollection; + const updatedLocations = values.locations.map((location) => { + if (location.leaflet_id === layer_id) { + location.geojson = [...featureCollection.features]; + } + return location; + }); + setFieldValue(formik_key, [...updatedLocations]); + }); + }} + onLayerDelete={(event: DrawEvents.Deleted) => { + event.layers.getLayers().forEach((item) => { + const layer_id = L.stamp(item); + const updatedLocations = values.locations.filter((location) => location.leaflet_id !== layer_id); + setFieldValue(formik_key, [...updatedLocations]); + }); + }} + /> + + + {selectedRegion && ( + { + const layerName = layerNameHandler[selectedRegion.key](geo); + const region: ISurveyLocation = { + name: layerName, + description: '', + geojson: [geo], + revision_count: 0 + }; + setFieldValue(formik_key, [...values.locations, region]); + }} + /> + )} + + !item?.leaflet_id) // filter out user drawn locations + .map((item) => { + // Map geojson features into layer objects for leaflet + return { layerName: item.name, features: item.geojson.map((geo) => ({ geoJSON: geo })) }; + })} + /> + + + + + + ); +}; diff --git a/app/src/features/surveys/components/locations/SurveyLocationPage.tsx b/app/src/features/surveys/components/locations/SurveyLocationPage.tsx new file mode 100644 index 0000000000..58914c8c36 --- /dev/null +++ b/app/src/features/surveys/components/locations/SurveyLocationPage.tsx @@ -0,0 +1,62 @@ +import { Button, Paper, Typography } from '@mui/material'; +import Box from '@mui/material/Box'; +import CircularProgress from '@mui/material/CircularProgress'; +import { grey } from '@mui/material/colors'; +import { SurveyContext } from 'contexts/surveyContext'; +import { useContext } from 'react'; + +export const SurveyLocationPage = () => { + const surveyContext = useContext(SurveyContext); + + if (!surveyContext.surveyDataLoader.data) { + return ; + } + + return ( + + + + + Survey Area Boundaries + + + + + + + + + + + ); +}; diff --git a/app/src/features/surveys/edit/EditSurveyForm.tsx b/app/src/features/surveys/edit/EditSurveyForm.tsx index 16b2049cce..0fd4c8245b 100644 --- a/app/src/features/surveys/edit/EditSurveyForm.tsx +++ b/app/src/features/surveys/edit/EditSurveyForm.tsx @@ -7,6 +7,7 @@ import { makeStyles } from '@mui/styles'; import HorizontalSplitFormComponent from 'components/fields/HorizontalSplitFormComponent'; import { ScrollToFormikError } from 'components/formik/ScrollToFormikError'; import { DATE_FORMAT, DATE_LIMIT } from 'constants/dateTimeFormats'; +import SamplingStrategyForm from 'features/surveys/components/SamplingStrategyForm'; import SurveyPartnershipsForm, { SurveyPartnershipsFormInitialValues, SurveyPartnershipsFormYupSchema @@ -27,7 +28,6 @@ import GeneralInformationForm, { } from '../components/GeneralInformationForm'; import ProprietaryDataForm, { ProprietaryDataYupSchema } from '../components/ProprietaryDataForm'; import PurposeAndMethodologyForm, { PurposeAndMethodologyYupSchema } from '../components/PurposeAndMethodologyForm'; -import SamplingMethodsForm from '../components/SamplingMethodsForm'; import StudyAreaForm, { SurveyLocationInitialValues, SurveyLocationYupSchema } from '../components/StudyAreaForm'; import { SurveyBlockInitialValues } from '../components/SurveyBlockSection'; import SurveyFundingSourceForm, { @@ -240,9 +240,9 @@ const EditSurveyForm: React.FC = (props) => { } + component={} /> @@ -250,7 +250,16 @@ const EditSurveyForm: React.FC = (props) => { }> + component={ + + Define Survey Study Area + + Import, draw or select a feature from an existing layer to define the study areas for this survey. + + + + } + /> diff --git a/app/src/features/surveys/observations/ObservationComponent.tsx b/app/src/features/surveys/observations/ObservationComponent.tsx index 4d428cf09e..270e1e366d 100644 --- a/app/src/features/surveys/observations/ObservationComponent.tsx +++ b/app/src/features/surveys/observations/ObservationComponent.tsx @@ -1,75 +1,65 @@ -import { mdiCogOutline, mdiPlus } from '@mdi/js'; +import { mdiImport, mdiPlus } from '@mdi/js'; import Icon from '@mdi/react'; import { LoadingButton } from '@mui/lab'; import Box from '@mui/material/Box'; import Button from '@mui/material/Button'; +import Collapse from '@mui/material/Collapse'; +import { grey } from '@mui/material/colors'; import Toolbar from '@mui/material/Toolbar'; import Typography from '@mui/material/Typography'; +import FileUploadDialog from 'components/dialog/FileUploadDialog'; import YesNoDialog from 'components/dialog/YesNoDialog'; +import { UploadFileStatus } from 'components/file-upload/FileUploadItem'; import { ObservationsTableI18N } from 'constants/i18n'; -import { CodesContext } from 'contexts/codesContext'; import { ObservationsContext } from 'contexts/observationsContext'; import { SurveyContext } from 'contexts/surveyContext'; -import ObservationsTable, { - ISampleMethodSelectProps, - ISamplePeriodSelectProps, - ISampleSiteSelectProps -} from 'features/surveys/observations/ObservationsTable'; +import ObservationsTable from 'features/surveys/observations/ObservationsTable'; +import { useBiohubApi } from 'hooks/useBioHubApi'; import { useContext, useState } from 'react'; -import { getCodesName } from 'utils/Utils'; const ObservationComponent = () => { - const sampleSites: ISampleSiteSelectProps[] = []; - const sampleMethods: ISampleMethodSelectProps[] = []; - const samplePeriods: ISamplePeriodSelectProps[] = []; + const [showImportDiaolog, setShowImportDiaolog] = useState(false); + const [processingRecords, setProcessingRecords] = useState(false); const observationsContext = useContext(ObservationsContext); const surveyContext = useContext(SurveyContext); - const codesContext = useContext(CodesContext); + const biohubApi = useBiohubApi(); - const [isSaving, setIsSaving] = useState(false); - const [showConfirmRemoveAllDialog, setShowConfirmRemoveAllDialog] = useState(false); - - const handleSaveChanges = async () => { - setIsSaving(true); - - return observationsContext.saveRecords().finally(() => { - setIsSaving(false); - }); - }; + const { projectId, surveyId } = surveyContext; - const showSaveButton = observationsContext.hasUnsavedChanges(); - - if (surveyContext.sampleSiteDataLoader.data && codesContext.codesDataLoader.data) { - // loop through and collect all sites - surveyContext.sampleSiteDataLoader.data.sampleSites.forEach((site) => { - sampleSites.push({ - survey_sample_site_id: site.survey_sample_site_id, - sample_site_name: site.name - }); - - // loop through and collect all methods for all sites - site.sample_methods?.forEach((method) => { - sampleMethods.push({ - survey_sample_method_id: method.survey_sample_method_id, - survey_sample_site_id: site.survey_sample_site_id, - sample_method_name: - getCodesName(codesContext.codesDataLoader.data, 'sample_methods', method.method_lookup_id) ?? '' - }); - - // loop through and collect all periods for all methods for all sites - method.sample_periods?.forEach((period) => { - samplePeriods.push({ - survey_sample_period_id: period.survey_sample_period_id, - survey_sample_method_id: period.survey_sample_method_id, - sample_period_name: `${period.start_date} - ${period.end_date}` + const handleImportObservations = async (file: File) => { + return biohubApi.observation.uploadCsvForImport(projectId, surveyId, file).then((response) => { + setShowImportDiaolog(false); + setProcessingRecords(true); + biohubApi.observation + .processCsvSubmission(projectId, surveyId, response.submissionId) + .then(() => { + observationsContext.refreshRecords().then(() => { + setProcessingRecords(false); }); + }) + .catch(() => { + setProcessingRecords(false); }); - }); }); - } + }; + + const hasUnsavedChanges = observationsContext.hasUnsavedChanges(); + const [showConfirmRemoveAllDialog, setShowConfirmRemoveAllDialog] = useState(false); return ( <> + setShowImportDiaolog(false)} + onUpload={handleImportObservations} + FileUploadProps={{ + fileHandler: (file) => { + console.log(file); + }, + dropZoneProps: { maxNumFiles: 1, acceptedFileExtensions: '.csv' }, + status: UploadFileStatus.STAGED + }}> { - Observations + Observations - {showSaveButton && ( - <> - handleSaveChanges()}> - Save - - - - )} - - + '& div:first-of-type': { + display: 'flex', + overflow: 'hidden', + whiteSpace: 'nowrap' + } + }}> + + + + + + observationsContext.stopEditAndSaveRows()} + disabled={observationsContext.isSaving}> + Save + + + + + + - - - + + + diff --git a/app/src/features/surveys/observations/ObservationMapView.tsx b/app/src/features/surveys/observations/ObservationMapView.tsx deleted file mode 100644 index 244ac7c6eb..0000000000 --- a/app/src/features/surveys/observations/ObservationMapView.tsx +++ /dev/null @@ -1,17 +0,0 @@ -import Box from '@mui/material/Box'; -import Typography from '@mui/material/Typography'; - -export const ObservationMapView = () => { - return ( - - Map View - - ); -}; diff --git a/app/src/features/surveys/observations/ObservationsMap.tsx b/app/src/features/surveys/observations/ObservationsMap.tsx new file mode 100644 index 0000000000..e0e0d77b65 --- /dev/null +++ b/app/src/features/surveys/observations/ObservationsMap.tsx @@ -0,0 +1,105 @@ +import { mdiRefresh } from '@mdi/js'; +import Icon from '@mdi/react'; +import { IconButton } from '@mui/material'; +import Box from '@mui/material/Box'; +import { square } from '@turf/turf'; +import MapContainer, { INonEditableGeometries } from 'components/map/MapContainer'; +import { ObservationsContext } from 'contexts/observationsContext'; +import { Position } from 'geojson'; +import { LatLngBoundsExpression } from 'leaflet'; +import { useCallback, useContext, useMemo, useState } from 'react'; +import { calculateFeatureBoundingBox, latLngBoundsFromBoundingBox } from 'utils/mapBoundaryUploadHelpers'; + +const ObservationsMap = () => { + const observationsContext = useContext(ObservationsContext); + + const surveyObservations: INonEditableGeometries[] = useMemo(() => { + const observations = observationsContext.observationsDataLoader.data?.surveyObservations; + + if (!observations) { + return []; + } + + return observations + .filter((observation) => observation.latitude !== undefined && observation.longitude !== undefined) + .map((observation) => { + /* + const link = observation.survey_observation_id + ? `observations/#view-${observation.survey_observation_id}` + : 'observations' + */ + + return { + feature: { + type: 'Feature', + properties: {}, + geometry: { + type: 'Point', + coordinates: [observation.longitude, observation.latitude] as Position + } + }, + popupComponent: undefined + /*( + +
{JSON.stringify(observation)}
+ +
+ )*/ + }; + }); + }, [observationsContext.observationsDataLoader.data]); + + const getDefaultMapBounds = useCallback((): LatLngBoundsExpression | undefined => { + const features = surveyObservations.map((observation) => observation.feature); + const boundingBox = calculateFeatureBoundingBox(features); + + if (!boundingBox) { + return; + } + + return latLngBoundsFromBoundingBox(square(boundingBox)); + }, [surveyObservations]); + + const [bounds, setBounds] = useState(getDefaultMapBounds()); + + const zoomToBoundaryExtent = useCallback(() => { + setBounds(getDefaultMapBounds()); + }, [surveyObservations]); + + return ( + + + {surveyObservations.length > 0 && ( + + zoomToBoundaryExtent()}> + + + + )} + + ); +}; + +export default ObservationsMap; diff --git a/app/src/features/surveys/observations/ObservationsTable.tsx b/app/src/features/surveys/observations/ObservationsTable.tsx index 0543261643..843d476de3 100644 --- a/app/src/features/surveys/observations/ObservationsTable.tsx +++ b/app/src/features/surveys/observations/ObservationsTable.tsx @@ -1,7 +1,17 @@ import { mdiTrashCanOutline } from '@mdi/js'; import Icon from '@mdi/react'; +import Box from '@mui/material/Box'; +import { cyan, grey } from '@mui/material/colors'; import IconButton from '@mui/material/IconButton'; -import { DataGrid, GridColDef, GridEditInputCell, GridEventListener, GridRowModelUpdate } from '@mui/x-data-grid'; +import Skeleton from '@mui/material/Skeleton'; +import TextField from '@mui/material/TextField'; +import { + DataGrid, + GridColDef, + GridEventListener, + GridInputRowSelectionModel, + GridRowModelUpdate +} from '@mui/x-data-grid'; import { LocalizationProvider, TimePicker } from '@mui/x-date-pickers'; import { AdapterMoment } from '@mui/x-date-pickers/AdapterMoment'; import AutocompleteDataGridEditCell from 'components/data-grid/autocomplete/AutocompleteDataGridEditCell'; @@ -12,50 +22,114 @@ import TaxonomyDataGridEditCell from 'components/data-grid/taxonomy/TaxonomyData import TaxonomyDataGridViewCell from 'components/data-grid/taxonomy/TaxonomyDataGridViewCell'; import YesNoDialog from 'components/dialog/YesNoDialog'; import { ObservationsTableI18N } from 'constants/i18n'; -import { IObservationTableRow, ObservationsContext } from 'contexts/observationsContext'; +import { CodesContext } from 'contexts/codesContext'; +import { IObservationRecord, IObservationTableRow, ObservationsContext } from 'contexts/observationsContext'; +import { SurveyContext } from 'contexts/surveyContext'; +import { + IGetSampleLocationRecord, + IGetSampleMethodRecord, + IGetSamplePeriodRecord +} from 'interfaces/useSurveyApi.interface'; import moment from 'moment'; -import { useContext, useEffect, useState } from 'react'; +import { useContext, useEffect, useMemo, useState } from 'react'; +import { useLocation } from 'react-router'; +import { getCodesName } from 'utils/Utils'; -export interface ISampleSiteSelectProps { +type ISampleSiteOption = { survey_sample_site_id: number; sample_site_name: string; -} +}; -export interface ISampleMethodSelectProps { +type ISampleMethodOption = { survey_sample_method_id: number; survey_sample_site_id: number; sample_method_name: string; -} +}; -export interface ISamplePeriodSelectProps { +type ISamplePeriodOption = { survey_sample_period_id: number; survey_sample_method_id: number; sample_period_name: string; -} +}; export interface ISpeciesObservationTableProps { - sample_sites: { - survey_sample_site_id: number; - sample_site_name: string; - }[]; - sample_methods: { - survey_sample_method_id: number; - survey_sample_site_id: number; - sample_method_name: string; - }[]; - sample_periods: { - survey_sample_period_id: number; - survey_sample_method_id: number; - sample_period_name: string; - }[]; + isLoading?: boolean; } +const SampleSiteSkeleton = () => ( + + + + + + + + +); + +const LoadingOverlay = () => { + return ( + + + + + + + ); +}; + const ObservationsTable = (props: ISpeciesObservationTableProps) => { - const { sample_sites, sample_methods, sample_periods } = props; + const [deletingObservation, setDeletingObservation] = useState(null); + const location = useLocation(); const observationsContext = useContext(ObservationsContext); - const { observationsDataLoader } = observationsContext; + const surveyContext = useContext(SurveyContext); + const codesContext = useContext(CodesContext); + const hasLoadedCodes = Boolean(codesContext.codesDataLoader.data); + const { observationsDataLoader } = observationsContext; const apiRef = observationsContext._muiDataGridApiRef; + // Collect sample sites + const surveySampleSites: IGetSampleLocationRecord[] = surveyContext.sampleSiteDataLoader.data?.sampleSites ?? []; + const sampleSiteOptions: ISampleSiteOption[] = + surveySampleSites.map((site) => ({ + survey_sample_site_id: site.survey_sample_site_id, + sample_site_name: site.name + })) ?? []; + + // Collect sample methods + const surveySampleMethods: IGetSampleMethodRecord[] = surveySampleSites + .filter((sampleSite) => Boolean(sampleSite.sample_methods)) + .map((sampleSite) => sampleSite.sample_methods as IGetSampleMethodRecord[]) + .flat(2); + const sampleMethodOptions: ISampleMethodOption[] = hasLoadedCodes + ? surveySampleMethods.map((method) => ({ + survey_sample_method_id: method.survey_sample_method_id, + survey_sample_site_id: method.survey_sample_site_id, + sample_method_name: + getCodesName(codesContext.codesDataLoader.data, 'sample_methods', method.method_lookup_id) ?? '' + })) + : []; + + // Collect sample periods + const samplePeriodOptions: ISamplePeriodOption[] = surveySampleMethods + .filter((sampleMethod) => Boolean(sampleMethod.sample_periods)) + .map((sampleMethod) => sampleMethod.sample_periods as IGetSamplePeriodRecord[]) + .flat(2) + .map((samplePeriod: IGetSamplePeriodRecord) => ({ + survey_sample_period_id: samplePeriod.survey_sample_period_id, + survey_sample_method_id: samplePeriod.survey_sample_method_id, + sample_period_name: `${samplePeriod.start_date} - ${samplePeriod.end_date}` + })); + const observationColumns: GridColDef[] = [ { field: 'wldtaxonomic_units_id', @@ -66,6 +140,9 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { disableColumnMenu: true, headerAlign: 'left', align: 'left', + valueSetter: (params) => { + return { ...params.row, wldtaxonomic_units_id: Number(params.value) }; + }, renderCell: (params) => { return ; }, @@ -78,15 +155,15 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { headerName: 'Sampling Site', editable: true, flex: 1, - minWidth: 200, + minWidth: 250, disableColumnMenu: true, headerAlign: 'left', align: 'left', renderCell: (params) => { return ( - dataGridProps={params} - options={sample_sites.map((item) => ({ + options={sampleSiteOptions.map((item) => ({ label: item.sample_site_name, value: item.survey_sample_site_id }))} @@ -95,9 +172,9 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { }, renderEditCell: (params) => { return ( - dataGridProps={params} - options={sample_sites.map((item) => ({ + options={sampleSiteOptions.map((item) => ({ label: item.sample_site_name, value: item.survey_sample_site_id }))} @@ -110,33 +187,33 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { headerName: 'Sampling Method', editable: true, flex: 1, - minWidth: 200, + minWidth: 250, disableColumnMenu: true, headerAlign: 'left', align: 'left', renderCell: (params) => { return ( - dataGridProps={params} optionsGetter={(row, allOptions) => { return allOptions .filter((item) => item.survey_sample_site_id === row.survey_sample_site_id) .map((item) => ({ label: item.sample_method_name, value: item.survey_sample_method_id })); }} - allOptions={sample_methods} + allOptions={sampleMethodOptions} /> ); }, renderEditCell: (params) => { return ( - dataGridProps={params} optionsGetter={(row, allOptions) => { return allOptions .filter((item) => item.survey_sample_site_id === row.survey_sample_site_id) .map((item) => ({ label: item.sample_method_name, value: item.survey_sample_method_id })); }} - allOptions={sample_methods} + allOptions={sampleMethodOptions} /> ); } @@ -145,34 +222,34 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { field: 'survey_sample_period_id', headerName: 'Sampling Period', editable: true, - flex: 1, - minWidth: 200, + flex: 0, + width: 240, disableColumnMenu: true, headerAlign: 'left', align: 'left', renderCell: (params) => { return ( - dataGridProps={params} optionsGetter={(row, allOptions) => { return allOptions .filter((item) => item.survey_sample_method_id === row.survey_sample_method_id) .map((item) => ({ label: item.sample_period_name, value: item.survey_sample_period_id })); }} - allOptions={sample_periods} + allOptions={samplePeriodOptions} /> ); }, renderEditCell: (params) => { return ( - dataGridProps={params} optionsGetter={(row, allOptions) => { return allOptions .filter((item) => item.survey_sample_method_id === row.survey_sample_method_id) .map((item) => ({ label: item.sample_period_name, value: item.survey_sample_period_id })); }} - allOptions={sample_periods} + allOptions={samplePeriodOptions} /> ); } @@ -182,19 +259,32 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { headerName: 'Count', editable: true, type: 'number', - minWidth: 100, + minWidth: 110, disableColumnMenu: true, - headerAlign: 'left', - align: 'left', - renderEditCell: (params) => ( - - ) + headerAlign: 'right', + align: 'right', + renderEditCell: (params) => { + return ( + { + if (!/^\d{0,7}$/.test(event.target.value)) { + // If the value is not a number, return + return; + } + + apiRef?.current.setEditCellValue({ + id: params.id, + field: params.field, + value: event.target.value + }); + }} + value={params.value ?? ''} + variant="outlined" + type="text" + inputProps={{ inputMode: 'numeric' }} + /> + ); + } }, { field: 'observation_date', @@ -214,24 +304,33 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { type: 'string', width: 150, disableColumnMenu: true, - headerAlign: 'left', - align: 'left', - renderCell: (params) => { - if (!params.value) { + headerAlign: 'right', + align: 'right', + valueSetter: (params) => { + return { ...params.row, observation_time: params.value }; + }, + valueParser: (value) => { + if (!value) { return null; } - if (moment.isMoment(params.value)) { - return <>{params.value.format('HH:mm')}; + if (moment.isMoment(value)) { + return value.format('HH:mm'); } - return <>{moment(params.value, 'HH:mm:ss').format('HH:mm')}; + return moment(value, 'HH:mm:ss').format('HH:mm'); + }, + renderCell: (params) => { + if (!params.value) { + return null; + } + + return <>{params.value}; }, renderEditCell: (params) => { return ( { apiRef?.current.setEditCellValue({ id: params.id, field: params.field, value: value }); @@ -243,6 +342,7 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { value: value?.format('HH:mm:ss') }); }} + timeSteps={{ hours: 1, minutes: 1 }} ampm={false} /> @@ -252,32 +352,94 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { { field: 'latitude', headerName: 'Lat', - type: 'number', editable: true, - width: 150, + width: 120, disableColumnMenu: true, - headerAlign: 'left', - align: 'left', - renderCell: (params) => String(params.row.latitude) + headerAlign: 'right', + align: 'right', + valueSetter: (params) => { + if (/^-?\d{1,3}(?:\.\d{0,12})?$/.test(params.value)) { + // If the value is a legal latitude value + // Valid entries: `-1`, `-1.1`, `-123.456789` `1`, `1.1, `123.456789` + return { ...params.row, latitude: Number(params.value) }; + } + + const value = parseFloat(params.value); + return { ...params.row, longitude: isNaN(value) ? null : value }; + }, + renderEditCell: (params) => { + return ( + { + if (!/^-?\d{0,3}(?:\.\d{0,12})?$/.test(event.target.value)) { + // If the value is not a subset of a legal latitude value, prevent the value from being applied + return; + } + + apiRef?.current.setEditCellValue({ + id: params.id, + field: params.field, + value: event.target.value + }); + }} + value={params.value ?? ''} + variant="outlined" + type="text" + inputProps={{ inputMode: 'numeric' }} + /> + ); + } }, { field: 'longitude', headerName: 'Long', - type: 'number', editable: true, - width: 150, + width: 120, disableColumnMenu: true, - headerAlign: 'left', - align: 'left', - renderCell: (params) => String(params.row.longitude) + headerAlign: 'right', + align: 'right', + valueSetter: (params) => { + if (/^-?\d{1,3}(?:\.\d{0,12})?$/.test(params.value)) { + // If the value is a legal longitude value + // Valid entries: `-1`, `-1.1`, `-123.456789` `1`, `1.1, `123.456789` + return { ...params.row, longitude: Number(params.value) }; + } + + const value = parseFloat(params.value); + return { ...params.row, longitude: isNaN(value) ? null : value }; + }, + renderEditCell: (params) => { + return ( + { + if (!/^-?\d{0,3}(?:\.\d{0,12})?$/.test(event.target.value)) { + // If the value is not a subset of a legal longitude value, prevent the value from being applied + return; + } + + apiRef?.current.setEditCellValue({ + id: params.id, + field: params.field, + value: event.target.value + }); + }} + value={params.value ?? ''} + variant="outlined" + type="text" + inputProps={{ inputMode: 'numeric' }} + /> + ); + } }, { field: 'actions', headerName: '', type: 'actions', - width: 96, + width: 70, disableColumnMenu: true, resizable: false, + headerClassName: 'pinnedColumn', + cellClassName: 'pinnedColumn', getActions: (params) => [ { @@ -291,13 +453,10 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { } ]; - const [deletingObservation, setDeletingObservation] = useState(null); - const showConfirmDeleteDialog = Boolean(deletingObservation); - useEffect(() => { if (observationsDataLoader.data?.surveyObservations) { const rows: IObservationTableRow[] = observationsDataLoader.data.surveyObservations.map( - (row: IObservationTableRow) => ({ + (row: IObservationRecord) => ({ ...row, id: String(row.survey_observation_id) }) @@ -336,10 +495,16 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { observationsContext.markRecordWithUnsavedChanges(id); }; - const handleProcessRowUpdate = (newRow: IObservationTableRow) => { - const updatedRow = { ...newRow, wldtaxonomic_units_id: Number(newRow.wldtaxonomic_units_id) }; - return updatedRow; - }; + const showConfirmDeleteDialog = Boolean(deletingObservation); + + const rowSelectionModel: GridInputRowSelectionModel | undefined = useMemo(() => { + if (location.hash.startsWith('#view-')) { + const selectedId = location.hash.split('-')[1]; + return [selectedId]; + } + + return undefined; + }, []); return ( <> @@ -361,40 +526,122 @@ const ObservationsTable = (props: ISpeciesObservationTableProps) => { onNo={() => handleCancelDeleteRow()} /> 'auto'} + slots={{ + loadingOverlay: LoadingOverlay + }} sx={{ - background: '#fff', + background: grey[50], border: 'none', - '& .MuiDataGrid-pinnedColumns, .MuiDataGrid-pinnedColumnHeaders': { - background: '#fff' + '& .pinnedColumn': { + position: 'sticky', + right: 0, + top: 0, + borderLeft: '1px solid' + grey[300] + }, + '& .MuiDataGrid-columnHeaders': { + background: '#fff', + position: 'relative', + '&:after': { + content: "''", + position: 'absolute', + top: '0', + right: 0, + width: '70px', + height: '60px', + background: '#fff', + borderLeft: '1px solid' + grey[300] + } + }, + '& .MuiDataGrid-columnHeader': { + // px: 3, + py: 1, + '&:focus': { + outline: 'none' + } }, '& .MuiDataGrid-columnHeaderTitle': { fontWeight: 700, textTransform: 'uppercase', - color: '#999' + color: 'text.secondary' }, - '& .test': { - position: 'sticky', - right: 0, - top: 0, - borderLeft: '1px solid #ccc', - background: '#fff' + '& .MuiDataGrid-cell': { + // px: 3, + py: 1, + background: '#fff', + '&.MuiDataGrid-cell--editing:focus-within': { + outline: 'none' + }, + '&.MuiDataGrid-cell--editing': { + p: 0.5, + backgroundColor: cyan[100] + } }, - '& .MuiDataGrid-columnHeaders': { - position: 'relative' + '& .MuiDataGrid-row--editing': { + boxShadow: 'none', + backgroundColor: cyan[50], + '& .MuiDataGrid-cell': { + backgroundColor: cyan[50] + } }, - '& .MuiDataGrid-actionsCell': { - gap: 0 + '& .MuiDataGrid-editInputCell': { + border: '1px solid #ccc', + '&:hover': { + borderColor: 'primary.main' + }, + '&.Mui-focused': { + borderColor: 'primary.main', + outlineWidth: '2px', + outlineStyle: 'solid', + outlineColor: 'primary.main', + outlineOffset: '-2px' + } + }, + '& .MuiInputBase-root': { + height: '40px', + borderRadius: '4px', + background: '#fff', + fontSize: '0.875rem', + '&.MuiDataGrid-editInputCell': { + padding: 0 + } + }, + '& .MuiOutlinedInput-root': { + borderRadius: '4px', + background: '#fff', + border: 'none', + '&:hover': { + borderColor: 'primary.main' + }, + '&:hover > fieldset': { + border: '1px solid primary.main' + } + }, + '& .MuiOutlinedInput-notchedOutline': { + border: '1px solid ' + grey[300], + '&.Mui-focused': { + borderColor: 'primary.main' + } + }, + '& .MuiDataGrid-virtualScrollerContent': { + background: grey[100] + }, + '& .MuiDataGrid-footerContainer': { + background: '#fff' } }} /> diff --git a/app/src/features/surveys/observations/SurveyObservationHeader.tsx b/app/src/features/surveys/observations/SurveyObservationHeader.tsx index 25df800057..d0e72c4585 100644 --- a/app/src/features/surveys/observations/SurveyObservationHeader.tsx +++ b/app/src/features/surveys/observations/SurveyObservationHeader.tsx @@ -1,7 +1,9 @@ import Breadcrumbs from '@mui/material/Breadcrumbs'; +import { grey } from '@mui/material/colors'; +import Link from '@mui/material/Link'; import Paper from '@mui/material/Paper'; import Typography from '@mui/material/Typography'; -import { Link } from 'react-router-dom'; +import { Link as RouterLink } from 'react-router-dom'; export interface SurveyObservationHeaderProps { project_id: number; @@ -18,30 +20,30 @@ const SurveyObservationHeader: React.FC = (props) elevation={0} sx={{ pt: 3, - pb: 3.5, - px: 3 + pb: 3.75, + px: 3, + borderBottomStyle: 'solid', + borderBottomWidth: '1px', + borderBottomColor: grey[300] }}> - - - - {survey_name} - + + + {survey_name} - - Manage Survey Observations + + Manage Observations - Manage Survey Observations + Manage Observations diff --git a/app/src/features/surveys/observations/SurveyObservationPage.tsx b/app/src/features/surveys/observations/SurveyObservationPage.tsx index 81cebed2d2..636999fa82 100644 --- a/app/src/features/surveys/observations/SurveyObservationPage.tsx +++ b/app/src/features/surveys/observations/SurveyObservationPage.tsx @@ -1,6 +1,7 @@ import Box from '@mui/material/Box'; import CircularProgress from '@mui/material/CircularProgress'; import { grey } from '@mui/material/colors'; +import Paper from '@mui/material/Paper'; import { SurveyContext } from 'contexts/surveyContext'; import { useContext } from 'react'; import ObservationComponent from './ObservationComponent'; @@ -15,38 +16,27 @@ export const SurveyObservationPage = () => { } return ( - - + + + - - - - {/* Sampling Site List */} @@ -55,7 +45,7 @@ export const SurveyObservationPage = () => { - + ); }; diff --git a/app/src/features/surveys/observations/sampling-sites/SamplingSiteHeader.tsx b/app/src/features/surveys/observations/sampling-sites/SamplingSiteHeader.tsx index 27fc44df1a..9bf3730a9e 100644 --- a/app/src/features/surveys/observations/sampling-sites/SamplingSiteHeader.tsx +++ b/app/src/features/surveys/observations/sampling-sites/SamplingSiteHeader.tsx @@ -2,25 +2,16 @@ import { LoadingButton } from '@mui/lab'; import Box from '@mui/material/Box'; import Breadcrumbs from '@mui/material/Breadcrumbs'; import Button from '@mui/material/Button'; +import { grey } from '@mui/material/colors'; +import Container from '@mui/material/Container'; import Link from '@mui/material/Link'; import Paper from '@mui/material/Paper'; -import { Theme } from '@mui/material/styles'; import Typography from '@mui/material/Typography'; -import { makeStyles } from '@mui/styles'; import { useFormikContext } from 'formik'; import { useHistory } from 'react-router'; import { Link as RouterLink } from 'react-router-dom'; import { ICreateSamplingSiteRequest } from './SamplingSitePage'; -const useStyles = makeStyles((theme: Theme) => ({ - actionButton: { - minWidth: '6rem', - '& + button': { - marginLeft: '0.5rem' - } - } -})); - export interface ISamplingSiteHeaderProps { project_id: number; survey_id: number; @@ -30,7 +21,6 @@ export interface ISamplingSiteHeaderProps { breadcrumb: string; } export const SamplingSiteHeader: React.FC = (props) => { - const classes = useStyles(); const history = useHistory(); const formikProps = useFormikContext(); @@ -41,63 +31,70 @@ export const SamplingSiteHeader: React.FC = (props) => square elevation={0} sx={{ + position: 'sticky', + top: 0, + zIndex: 1002, pt: 3, - pb: 3, - px: 3 + pb: 3.75, + borderBottomStyle: 'solid', + borderBottomWidth: '1px', + borderBottomColor: grey[300] }}> - - - - {survey_name} - - - - - Manage Survey Observations + + + + {survey_name} + + + Manage Survey Observations + + {breadcrumb} + + + + {title} - - - {breadcrumb} - - - - - {title} - - - { - formikProps.submitForm(); - }} - className={classes.actionButton}> - Save and Exit - - + + { + formikProps.submitForm(); + }}> + Save and Exit + + + - + ); diff --git a/app/src/features/surveys/observations/sampling-sites/SamplingSiteList.tsx b/app/src/features/surveys/observations/sampling-sites/SamplingSiteList.tsx index ee74e4a52e..cd806839d1 100644 --- a/app/src/features/surveys/observations/sampling-sites/SamplingSiteList.tsx +++ b/app/src/features/surveys/observations/sampling-sites/SamplingSiteList.tsx @@ -1,12 +1,19 @@ -import { mdiDotsVertical, mdiPencilOutline, mdiPlus, mdiTrashCanOutline } from '@mdi/js'; +import { + mdiCalendarRange, + mdiChevronDown, + mdiDotsVertical, + mdiPencilOutline, + mdiPlus, + mdiTrashCanOutline +} from '@mdi/js'; import Icon from '@mdi/react'; import Accordion from '@mui/material/Accordion'; import AccordionDetails from '@mui/material/AccordionDetails'; import AccordionSummary from '@mui/material/AccordionSummary'; import Box from '@mui/material/Box'; import Button from '@mui/material/Button'; -import CircularProgress from '@mui/material/CircularProgress'; import { grey } from '@mui/material/colors'; +import Fade from '@mui/material/Fade'; import IconButton from '@mui/material/IconButton'; import List from '@mui/material/List'; import ListItem from '@mui/material/ListItem'; @@ -14,6 +21,7 @@ import ListItemIcon from '@mui/material/ListItemIcon'; import ListItemText from '@mui/material/ListItemText'; import Menu, { MenuProps } from '@mui/material/Menu'; import MenuItem from '@mui/material/MenuItem'; +import Skeleton from '@mui/material/Skeleton'; import Toolbar from '@mui/material/Toolbar'; import Typography from '@mui/material/Typography'; import { CodesContext } from 'contexts/codesContext'; @@ -22,6 +30,20 @@ import { useContext, useEffect, useState } from 'react'; import { Link as RouterLink } from 'react-router-dom'; import { getCodesName } from 'utils/Utils'; +const SampleSiteSkeleton = () => ( + + + +); + const SamplingSiteList = () => { const surveyContext = useContext(SurveyContext); const codesContext = useContext(CodesContext); @@ -30,7 +52,9 @@ const SamplingSiteList = () => { codesContext.codesDataLoader.load(); }, [codesContext.codesDataLoader]); - surveyContext.sampleSiteDataLoader.load(surveyContext.projectId, surveyContext.surveyId); + useEffect(() => { + surveyContext.sampleSiteDataLoader.refresh(surveyContext.projectId, surveyContext.surveyId); + }, []); const [anchorEl, setAnchorEl] = useState(null); const [selectedSampleSiteId, setSelectedSampleSiteId] = useState(); @@ -40,15 +64,6 @@ const SamplingSiteList = () => { setSelectedSampleSiteId(sample_site_id); }; - if ( - !surveyContext.sampleSiteDataLoader.data || - (surveyContext.sampleSiteDataLoader.isLoading && !codesContext.codesDataLoader.data) || - codesContext.codesDataLoader.isLoading - ) { - // TODO Fix styling: spinner loads in the corner of the component - return ; - } - return ( <> { vertical: 'top', horizontal: 'right' }}> - - - - - Edit Details + + + + + + Edit Details + console.log('DELETE THIS SAMPLING SITE')}> - Remove + Delete - Sampling Sites + Sampling Sites - + + {/* Display spinner if data loaders are still waiting for a response */} + + + + + + + + + + - {!surveyContext.sampleSiteDataLoader.data.sampleSites.length && ( - - No Sampling Sites - - )} + {/* Display text if the sample site data loader has no items in it */} + {!surveyContext.sampleSiteDataLoader.data?.sampleSites.length && + !surveyContext.sampleSiteDataLoader.isLoading && ( + + No Sampling Sites + + )} - {surveyContext.sampleSiteDataLoader.data.sampleSites.map((sampleSite, index) => { + {surveyContext.sampleSiteDataLoader.data?.sampleSites.map((sampleSite, index) => { return ( - + } + aria-controls="panel1bh-content" sx={{ - p: 0 - }} - aria-controls="panel1bh-content"> - + flex: '1 1 auto', + overflow: 'hidden', + py: 0.25, + pr: 1.5, + pl: 2, + gap: '24px', + '& .MuiAccordionSummary-content': { + flex: '1 1 auto', + overflow: 'hidden', + whiteSpace: 'nowrap' + } + }}> + {sampleSite.name} ) => handleMenuClick(event, sampleSite.survey_sample_site_id) } @@ -158,44 +222,52 @@ const SamplingSiteList = () => { - + {sampleSite.sample_methods?.map((sampleMethod) => { return ( - - - {getCodesName( - codesContext.codesDataLoader.data, - 'sample_methods', - sampleMethod.method_lookup_id - )} - - - {sampleMethod.sample_periods?.map((samplePeriod) => { - return ( - - - - {samplePeriod.start_date} to {samplePeriod.end_date} - - - - ); - })} - - + + + {sampleMethod.sample_periods?.map((samplePeriod) => { + return ( + + + + + + + ); + })} + ); })} diff --git a/app/src/features/surveys/observations/sampling-sites/SamplingSitePage.tsx b/app/src/features/surveys/observations/sampling-sites/SamplingSitePage.tsx index 2ec5123d5a..08c9e7ca8f 100644 --- a/app/src/features/surveys/observations/sampling-sites/SamplingSitePage.tsx +++ b/app/src/features/surveys/observations/sampling-sites/SamplingSitePage.tsx @@ -179,7 +179,7 @@ const SamplingSitePage = () => { survey_id={surveyContext.surveyId} survey_name={surveyContext.surveyDataLoader.data.surveyData.survey_details.survey_name} is_submitting={isSubmitting} - title="New Sampling Site" + title="Add Sampling Site" breadcrumb="Add Sampling Sites" /> diff --git a/app/src/features/surveys/observations/sampling-sites/components/SamplingSiteMapControl.tsx b/app/src/features/surveys/observations/sampling-sites/components/SamplingSiteMapControl.tsx index 3770a8af7c..bbcc601812 100644 --- a/app/src/features/surveys/observations/sampling-sites/components/SamplingSiteMapControl.tsx +++ b/app/src/features/surveys/observations/sampling-sites/components/SamplingSiteMapControl.tsx @@ -9,7 +9,7 @@ import Paper from '@mui/material/Paper'; import Typography from '@mui/material/Typography'; import { makeStyles } from '@mui/styles'; import FileUpload from 'components/file-upload/FileUpload'; -import FileUploadItem, { IUploadHandler } from 'components/file-upload/FileUploadItem'; +import FileUploadItem from 'components/file-upload/FileUploadItem'; import MapContainer from 'components/map/MapContainer'; import SampleSiteFileUploadItemActionButton from 'features/surveys/observations/sampling-sites/components/SampleSiteFileUploadItemActionButton'; import SampleSiteFileUploadItemProgressBar from 'features/surveys/observations/sampling-sites/components/SampleSiteFileUploadItemProgressBar'; @@ -19,12 +19,7 @@ import { Feature } from 'geojson'; import { LatLngBoundsExpression } from 'leaflet'; import get from 'lodash-es/get'; import { useEffect, useState } from 'react'; -import { - calculateUpdatedMapBounds, - handleGPXUpload, - handleKMLUpload, - handleShapeFileUpload -} from 'utils/mapBoundaryUploadHelpers'; +import { boundaryUploadHelper, calculateUpdatedMapBounds } from 'utils/mapBoundaryUploadHelpers'; import { pluralize } from 'utils/Utils'; const useStyles = makeStyles(() => ({ @@ -59,22 +54,10 @@ const SamplingSiteMapControl = (props: ISamplingSiteMapControlProps) => { const { name, mapId, formikProps } = props; - const { values, errors, setFieldValue } = formikProps; + const { values, errors, setFieldValue, setFieldError } = formikProps; const [updatedBounds, setUpdatedBounds] = useState(undefined); - const boundaryUploadHandler = (): IUploadHandler => { - return async (file) => { - if (file?.type.includes('zip') || file?.name.includes('.zip')) { - await handleShapeFileUpload(file, name, formikProps); - } else if (file?.type.includes('gpx') || file?.name.includes('.gpx')) { - await handleGPXUpload(file, name, formikProps); - } else if (file?.type.includes('kml') || file?.name.includes('.kml')) { - await handleKMLUpload(file, name, formikProps); - } - }; - }; - const removeFile = () => { setFieldValue(name, []); }; @@ -101,7 +84,14 @@ const SamplingSiteMapControl = (props: ISamplingSiteMapControlProps) => { )} { + setFieldValue(name, [...features]); + }, + onFailure: (message: string) => { + setFieldError(name, message); + } + })} onRemove={removeFile} dropZoneProps={{ maxNumFiles: 1, @@ -132,6 +122,7 @@ const SamplingSiteMapControl = (props: ISamplingSiteMapControlProps) => { { useEffect(() => { if (surveyContext.sampleSiteDataLoader.data) { const data = surveyContext.sampleSiteDataLoader.data.sampleSites.find( - (x) => x.survey_sample_site_id === surveySampleSiteId + (sampleSite) => sampleSite.survey_sample_site_id === surveySampleSiteId ); if (data !== undefined) { @@ -90,9 +89,9 @@ const SamplingSiteEditPage = () => { }; const handleSubmit = async (values: IEditSamplingSiteRequest) => { - setIsSubmitting(true); - try { + setIsSubmitting(true); + // create edit request const editSampleSite: IEditSamplingSiteRequest = { sampleSite: { @@ -115,6 +114,10 @@ const SamplingSiteEditPage = () => { // Disable cancel prompt so we can navigate away from the page after saving setEnableCancelCheck(false); + + // Refresh the context, so the next page loads with the latest data + surveyContext.sampleSiteDataLoader.refresh(surveyContext.projectId, surveyContext.surveyId); + // create complete, navigate back to observations page history.push(`/admin/projects/${surveyContext.projectId}/surveys/${surveyContext.surveyId}/observations`); surveyContext.sampleSiteDataLoader.refresh(surveyContext.projectId, surveyContext.surveyId); @@ -125,7 +128,6 @@ const SamplingSiteEditPage = () => { dialogError: (error as APIError).message, dialogErrorDetails: (error as APIError)?.errors }); - } finally { setIsSubmitting(false); } }; @@ -180,27 +182,16 @@ const SamplingSiteEditPage = () => { enableReinitialize onSubmit={handleSubmit}> - - ${initialFormData.sampleSite.name}`} - breadcrumb="Edit Sampling Sites" - /> - - - - + + +
diff --git a/app/src/features/surveys/observations/sampling-sites/edit/components/SampleMethodEditForm.tsx b/app/src/features/surveys/observations/sampling-sites/edit/components/SampleMethodEditForm.tsx index d271d3c677..deb08059c9 100644 --- a/app/src/features/surveys/observations/sampling-sites/edit/components/SampleMethodEditForm.tsx +++ b/app/src/features/surveys/observations/sampling-sites/edit/components/SampleMethodEditForm.tsx @@ -176,13 +176,20 @@ const SampleMethodEditForm = (props: SampleMethodEditFormProps) => { /> - + Time Periods - + {item.periods.map((period) => ( @@ -201,7 +208,7 @@ const SampleMethodEditForm = (props: SampleMethodEditFormProps) => { sx={{ mt: 1 }} - data-testid="sample-method-add-button" + data-testid="edit-sample-method-add-button" variant="outlined" color="primary" title="Add Sample Method" diff --git a/app/src/features/surveys/observations/sampling-sites/edit/components/SampleSiteEditForm.tsx b/app/src/features/surveys/observations/sampling-sites/edit/components/SampleSiteEditForm.tsx index faaebfb6c2..2cc7cebe87 100644 --- a/app/src/features/surveys/observations/sampling-sites/edit/components/SampleSiteEditForm.tsx +++ b/app/src/features/surveys/observations/sampling-sites/edit/components/SampleSiteEditForm.tsx @@ -3,13 +3,11 @@ import Box from '@mui/material/Box'; import Button from '@mui/material/Button'; import Divider from '@mui/material/Divider'; import Paper from '@mui/material/Paper'; -import { Theme } from '@mui/material/styles'; -import { makeStyles } from '@mui/styles'; import { Container } from '@mui/system'; import HorizontalSplitFormComponent from 'components/fields/HorizontalSplitFormComponent'; import { SurveyContext } from 'contexts/surveyContext'; import { ISurveySampleMethodData, SamplingSiteMethodYupSchema } from 'features/surveys/components/MethodForm'; -import { FormikProps } from 'formik'; +import { useFormikContext } from 'formik'; import { Feature } from 'geojson'; import { useContext } from 'react'; import { Link as RouterLink } from 'react-router-dom'; @@ -18,20 +16,6 @@ import SampleMethodEditForm from './SampleMethodEditForm'; import SampleSiteGeneralInformationForm from './SampleSiteGeneralInformationForm'; import SurveySamplingSiteEditForm from './SurveySampleSiteEditForm'; -const useStyles = makeStyles((theme: Theme) => ({ - actionButton: { - minWidth: '6rem', - '& + button': { - marginLeft: '0.5rem' - } - }, - sectionDivider: { - height: '1px', - marginTop: theme.spacing(5), - marginBottom: theme.spacing(5) - } -})); - export interface IEditSamplingSiteRequest { sampleSite: { name: string; @@ -43,9 +27,7 @@ export interface IEditSamplingSiteRequest { }; } -export interface ISampleSiteEditForm { - handleSubmit: (formikData: IEditSamplingSiteRequest) => void; - formikRef: React.RefObject>; +export interface ISampleSiteEditFormProps { isSubmitting: boolean; } @@ -63,10 +45,9 @@ export const samplingSiteYupSchema = yup.object({ }) }); -const SampleSiteEditForm: React.FC = (props) => { - const classes = useStyles(); - +const SampleSiteEditForm = (props: ISampleSiteEditFormProps) => { const surveyContext = useContext(SurveyContext); + const { submitForm } = useFormikContext(); return ( <> @@ -75,49 +56,60 @@ const SampleSiteEditForm: React.FC = (props) => { }> - + }> - + }> - + - { - props.formikRef.current?.submitForm(); - }} - className={classes.actionButton}> - Save and Exit - - + + submitForm()}> + Save and Exit + + + diff --git a/app/src/features/surveys/observations/sampling-sites/edit/components/SamplingSiteEditMapControl.tsx b/app/src/features/surveys/observations/sampling-sites/edit/components/SamplingSiteEditMapControl.tsx index f0ca80adbc..e2e8385c4a 100644 --- a/app/src/features/surveys/observations/sampling-sites/edit/components/SamplingSiteEditMapControl.tsx +++ b/app/src/features/surveys/observations/sampling-sites/edit/components/SamplingSiteEditMapControl.tsx @@ -9,7 +9,7 @@ import Paper from '@mui/material/Paper'; import Typography from '@mui/material/Typography'; import { makeStyles } from '@mui/styles'; import FileUpload from 'components/file-upload/FileUpload'; -import FileUploadItem, { IUploadHandler } from 'components/file-upload/FileUploadItem'; +import FileUploadItem from 'components/file-upload/FileUploadItem'; import { IStaticLayer } from 'components/map/components/StaticLayers'; import MapContainer from 'components/map/MapContainer'; import { SurveyContext } from 'contexts/surveyContext'; @@ -22,12 +22,7 @@ import { LatLngBoundsExpression } from 'leaflet'; import get from 'lodash-es/get'; import { useContext, useEffect, useState } from 'react'; import { useParams } from 'react-router'; -import { - calculateUpdatedMapBounds, - handleGPXUpload, - handleKMLUpload, - handleShapeFileUpload -} from 'utils/mapBoundaryUploadHelpers'; +import { boundaryUploadHelper, calculateUpdatedMapBounds } from 'utils/mapBoundaryUploadHelpers'; import { pluralize } from 'utils/Utils'; const useStyles = makeStyles(() => ({ @@ -73,18 +68,6 @@ const SamplingSiteEditMapControl = (props: ISamplingSiteEditMapControlProps) => const [updatedBounds, setUpdatedBounds] = useState(undefined); const [staticLayers, setStaticLayers] = useState([]); - const boundaryUploadHandler = (): IUploadHandler => { - return async (file) => { - if (file?.type.includes('zip') || file?.name.includes('.zip')) { - await handleShapeFileUpload(file, name, formikProps); - } else if (file?.type.includes('gpx') || file?.name.includes('.gpx')) { - await handleGPXUpload(file, name, formikProps); - } else if (file?.type.includes('kml') || file?.name.includes('.kml')) { - await handleKMLUpload(file, name, formikProps); - } - }; - }; - const removeFile = () => { setFieldValue(name, sampleSiteData?.geojson ? [sampleSiteData?.geojson] : []); setFieldError(name, undefined); @@ -110,7 +93,14 @@ const SamplingSiteEditMapControl = (props: ISamplingSiteEditMapControlProps) => { + setFieldValue(name, [...features]); + }, + onFailure: (message: string) => { + setFieldError(name, message); + } + })} onRemove={removeFile} dropZoneProps={{ maxNumFiles: 1, diff --git a/app/src/features/surveys/view/Partnerships.test.tsx b/app/src/features/surveys/view/Partnerships.test.tsx index b5374553c1..d17ff83f34 100644 --- a/app/src/features/surveys/view/Partnerships.test.tsx +++ b/app/src/features/surveys/view/Partnerships.test.tsx @@ -6,7 +6,7 @@ import { codes } from 'test-helpers/code-helpers'; import { getProjectForViewResponse } from 'test-helpers/project-helpers'; import { getSurveyForListResponse } from 'test-helpers/survey-helpers'; import { cleanup, render } from 'test-helpers/test-utils'; -import Partnerships from './Partnerships'; +import Partnerships from './components/Partnerships'; jest.mock('../../../hooks/useBioHubApi'); const mockBiohubApi = useBiohubApi as jest.Mock; diff --git a/app/src/features/surveys/view/SurveyDetails.test.tsx b/app/src/features/surveys/view/SurveyDetails.test.tsx index 314ba8380a..b4c1742bf3 100644 --- a/app/src/features/surveys/view/SurveyDetails.test.tsx +++ b/app/src/features/surveys/view/SurveyDetails.test.tsx @@ -1,13 +1,37 @@ import { CodesContext, ICodesContext } from 'contexts/codesContext'; import { SurveyContext } from 'contexts/surveyContext'; +import { createMemoryHistory } from 'history'; +import { GetRegionsResponse } from 'hooks/api/useSpatialApi'; import { DataLoader } from 'hooks/useDataLoader'; import { IGetSurveyForViewResponse } from 'interfaces/useSurveyApi.interface'; +import { Router } from 'react-router'; import { codes } from 'test-helpers/code-helpers'; import { getSurveyForViewResponse } from 'test-helpers/survey-helpers'; import { render, waitFor } from 'test-helpers/test-utils'; +import { useBiohubApi } from '../../../hooks/useBioHubApi'; import SurveyDetails from './SurveyDetails'; +const history = createMemoryHistory({ initialEntries: ['/admin/projects/1/surveys/2'] }); + +jest.mock('../../../hooks/useBioHubApi'); +const mockBiohubApi = useBiohubApi as jest.Mock; + +const mockUseApi = { + spatial: { + getRegions: jest.fn, []>() + } +}; + describe('SurveyDetails', () => { + beforeEach(() => { + mockBiohubApi.mockImplementation(() => mockUseApi); + mockUseApi.spatial.getRegions.mockClear(); + + mockUseApi.spatial.getRegions.mockResolvedValue({ + regions: [] + }); + }); + const mockCodesContext: ICodesContext = { codesDataLoader: { data: codes @@ -33,20 +57,22 @@ describe('SurveyDetails', () => { it('renders correctly', async () => { const { getByText } = render( - - - - - + + + + + + + ); await waitFor(() => { diff --git a/app/src/features/surveys/view/SurveyDetails.tsx b/app/src/features/surveys/view/SurveyDetails.tsx index 8ffd2d4f0d..4e926ca6b7 100644 --- a/app/src/features/surveys/view/SurveyDetails.tsx +++ b/app/src/features/surveys/view/SurveyDetails.tsx @@ -1,91 +1,131 @@ -import { Theme } from '@mui/material'; +import { mdiPencilOutline } from '@mdi/js'; +import Icon from '@mdi/react'; import Box from '@mui/material/Box'; import { grey } from '@mui/material/colors'; import Divider from '@mui/material/Divider'; +import IconButton from '@mui/material/IconButton'; +import Paper from '@mui/material/Paper'; +import Stack from '@mui/material/Stack'; import Toolbar from '@mui/material/Toolbar'; import Typography from '@mui/material/Typography'; -import { makeStyles } from '@mui/styles'; +import Permits from 'features/surveys/view/components/Permits'; +import SurveyParticipants from 'features/surveys/view/components/SurveyParticipants'; import SurveyProprietaryData from 'features/surveys/view/components/SurveyProprietaryData'; import SurveyPurposeAndMethodologyData from 'features/surveys/view/components/SurveyPurposeAndMethodologyData'; +import { Link as RouterLink } from 'react-router-dom'; +import Partnerships from './components/Partnerships'; +import SamplingMethods from './components/SamplingMethods'; import SurveyFundingSources from './components/SurveyFundingSources'; import SurveyGeneralInformation from './components/SurveyGeneralInformation'; -import Partnerships from './Partnerships'; - -const useStyles = makeStyles((theme: Theme) => ({ - surveyMetadataContainer: { - '& section + section': { - marginTop: theme.spacing(4) - }, - '& dt': { - flex: '0 0 40%' - }, - '& dd': { - flex: '1 1 auto' - }, - '& .MuiListItem-root': { - paddingTop: theme.spacing(1.5), - paddingBottom: theme.spacing(1.5) - }, - '& .MuiListItem-root:first-of-type': { - paddingTop: 0 - }, - '& .MuiListItem-root:last-of-type': { - paddingBottom: 0 - }, - '& h4': { - fontSize: '14px', - fontWeight: 700, - letterSpacing: '0.02rem', - textTransform: 'uppercase', - color: grey[600], - '& + hr': { - marginTop: theme.spacing(1.5), - marginBottom: theme.spacing(1.5) - } - } - } -})); +import SurveyStudyArea from './components/SurveyStudyArea'; /** * Survey details content for a survey. * * @return {*} */ -const SurveyDetails = () => { - const classes = useStyles(); +const SurveyDetails = () => { return ( - + - + Survey Details + + + - - - + + + + } + p={3} + sx={{ + '& h3': { + mb: 2, + flex: '0 0 auto', + fontSize: '0.875rem', + fontWeight: 700, + textTransform: 'uppercase' + }, + '& h4': { + width: { xs: '100%', md: '300px' }, + flex: '0 0 auto', + color: 'text.secondary' + }, + '& dl': { + flex: '1 1 auto', + m: 0 + }, + '& dt': { + flex: '0 0 auto', + width: { xs: '100%', md: '300px' }, + typography: { xs: 'body2', md: 'body1' }, + color: 'text.secondary' + }, + '& dd': { + typography: 'body1', + color: 'text.primary' + }, + '& .row': { + display: 'flex', + flexDirection: 'row', + flexWrap: { xs: 'wrap', md: 'nowrap' }, + gap: { xs: 0, md: '24px' }, + mt: 0, + py: 1, + borderTop: '1px solid ' + grey[300] + }, + '& hr': { + my: 3 + } + }}> - Funding Sources - - + General Information + + - Partnerships - - + Study Area Location + + - Purpose and Methodology - + Purpose and Methodology + + + Sampling Methods + + + + + Survey Participants + + + + + Funding Sources & Partnerships + + + + + + + + Permits + + + - Proprietary Information - + Proprietary Information - - + + ); }; diff --git a/app/src/features/surveys/view/SurveyHeader.test.tsx b/app/src/features/surveys/view/SurveyHeader.test.tsx index 23e8a9f2cc..3094399f4f 100644 --- a/app/src/features/surveys/view/SurveyHeader.test.tsx +++ b/app/src/features/surveys/view/SurveyHeader.test.tsx @@ -6,13 +6,15 @@ import SurveyHeader from 'features/surveys/view/SurveyHeader'; import { createMemoryHistory } from 'history'; import { useBiohubApi } from 'hooks/useBioHubApi'; import { DataLoader } from 'hooks/useDataLoader'; +import { IGetProjectForViewResponse } from 'interfaces/useProjectApi.interface'; import { IGetSurveyForViewResponse } from 'interfaces/useSurveyApi.interface'; import { Router } from 'react-router'; import { getMockAuthState, SystemAdminAuthState, SystemUserAuthState } from 'test-helpers/auth-helpers'; +import { getProjectForViewResponse } from 'test-helpers/project-helpers'; import { getSurveyForViewResponse } from 'test-helpers/survey-helpers'; import { cleanup, fireEvent, render, waitFor } from 'test-helpers/test-utils'; -const history = createMemoryHistory({ initialEntries: ['/admin/projects/1/surveys/1'] }); +const history = createMemoryHistory({ initialEntries: ['/admin/projects/1/surveys/2'] }); jest.mock('../../../hooks/useBioHubApi'); const mockBiohubApi = useBiohubApi as jest.Mock; @@ -44,11 +46,27 @@ const mockSurveyContext: ISurveyContext = { projectId: 1 }; +const mockProjectContext: IProjectContext = { + projectDataLoader: { + data: getProjectForViewResponse + } as DataLoader<[project_id: number], IGetProjectForViewResponse, unknown>, + artifactDataLoader: { + data: null + } as DataLoader, + surveysListDataLoader: { + data: null, + refresh: () => {} + } as DataLoader, + projectId: 1 +}; + const surveyForView = getSurveyForViewResponse; describe('SurveyHeader', () => { beforeEach(() => { mockBiohubApi.mockImplementation(() => mockUseApi); + + mockUseApi.survey.deleteSurvey.mockResolvedValue(true); }); afterEach(() => { @@ -57,23 +75,17 @@ describe('SurveyHeader', () => { const renderComponent = (authState: IAuthState) => { return render( - - } as unknown as IProjectContext - }> - - - - + + + + + - - - - - + + + + + ); }; @@ -84,7 +96,7 @@ describe('SurveyHeader', () => { const { getByTestId, findByText, getByText } = renderComponent(authState); - const surveyHeaderText = await findByText('survey name', { selector: 'h1 span' }); + const surveyHeaderText = await findByText('survey name', { selector: 'span' }); expect(surveyHeaderText).toBeVisible(); fireEvent.click(getByTestId('delete-survey-button')); @@ -98,7 +110,9 @@ describe('SurveyHeader', () => { fireEvent.click(getByTestId('yes-button')); await waitFor(() => { - expect(history.location.pathname).toEqual(`/admin/projects/${surveyForView.surveyData.survey_details.id}`); + expect(history.location.pathname).toEqual( + `/admin/projects/${surveyForView.surveyData.survey_details.project_id}` + ); }); }); @@ -107,7 +121,7 @@ describe('SurveyHeader', () => { const { queryByTestId, findByText } = renderComponent(authState); - const surveyHeaderText = await findByText('survey name', { selector: 'h1 span' }); + const surveyHeaderText = await findByText('survey name', { selector: 'span' }); expect(surveyHeaderText).toBeVisible(); expect(queryByTestId('delete-survey-button')).toBeNull(); diff --git a/app/src/features/surveys/view/SurveyHeader.tsx b/app/src/features/surveys/view/SurveyHeader.tsx index 0a18d46be4..d9be9ebc82 100644 --- a/app/src/features/surveys/view/SurveyHeader.tsx +++ b/app/src/features/surveys/view/SurveyHeader.tsx @@ -1,26 +1,20 @@ -import { - mdiArrowLeft, - mdiCalendarRangeOutline, - mdiChevronDown, - mdiCogOutline, - mdiPencilOutline, - mdiTrashCanOutline -} from '@mdi/js'; +import { mdiCalendarRangeOutline, mdiChevronDown, mdiCogOutline, mdiPencilOutline, mdiTrashCanOutline } from '@mdi/js'; import Icon from '@mdi/react'; -import { Theme } from '@mui/material'; import Box from '@mui/material/Box'; +import Breadcrumbs from '@mui/material/Breadcrumbs'; import Button from '@mui/material/Button'; import CircularProgress from '@mui/material/CircularProgress'; +import { grey } from '@mui/material/colors'; import Container from '@mui/material/Container'; +import Link from '@mui/material/Link'; import ListItemIcon from '@mui/material/ListItemIcon'; import Menu from '@mui/material/Menu'; import MenuItem from '@mui/material/MenuItem'; import Paper from '@mui/material/Paper'; import Typography from '@mui/material/Typography'; -import { makeStyles } from '@mui/styles'; import { IErrorDialogProps } from 'components/dialog/ErrorDialog'; import PublishSurveyDialog from 'components/publish/PublishSurveyDialog'; -import { ProjectRoleGuard, SystemRoleGuard } from 'components/security/Guards'; +import { ProjectRoleGuard } from 'components/security/Guards'; import { DATE_FORMAT } from 'constants/dateTimeFormats'; import { DeleteSurveyI18N } from 'constants/i18n'; import { PROJECT_PERMISSION, SYSTEM_ROLE } from 'constants/roles'; @@ -32,29 +26,9 @@ import { APIError } from 'hooks/api/useAxios'; import { useBiohubApi } from 'hooks/useBioHubApi'; import React, { useContext, useState } from 'react'; import { useHistory } from 'react-router'; -import { Link } from 'react-router-dom'; +import { Link as RouterLink } from 'react-router-dom'; import { getFormattedDateRangeString } from 'utils/Utils'; -const useStyles = makeStyles((theme: Theme) => ({ - pageTitleContainer: { - maxWidth: '150ch', - overflow: 'hidden', - textOverflow: 'ellipsis' - }, - pageTitle: { - display: '-webkit-box', - '-webkit-line-clamp': 2, - '-webkit-box-orient': 'vertical', - paddingTop: theme.spacing(0.5), - paddingBottom: theme.spacing(0.5), - overflow: 'hidden' - }, - pageTitleActions: { - paddingTop: theme.spacing(0.75), - paddingBottom: theme.spacing(0.75) - } -})); - /** * Survey header for a single-survey view. * @@ -65,8 +39,8 @@ const SurveyHeader = () => { const projectContext = useContext(ProjectContext); const surveyWithDetails = surveyContext.surveyDataLoader.data; + const projectWithDetails = projectContext.projectDataLoader.data; - const classes = useStyles(); const history = useHistory(); const biohubApi = useBiohubApi(); @@ -157,104 +131,128 @@ const SurveyHeader = () => { return ( <> - + - - - - - - - - Survey: {surveyWithDetails.surveyData.survey_details.survey_name} - - - - - Survey Timeline:   + + + {projectWithDetails?.projectData.project.project_name} + + + {surveyWithDetails.surveyData.survey_details.survey_name} + + + + + + {surveyWithDetails.surveyData.survey_details.survey_name} + + + + + {getFormattedDateRangeString( DATE_FORMAT.ShortMediumDateFormat, surveyWithDetails.surveyData.survey_details.start_date, surveyWithDetails.surveyData.survey_details.end_date )} - + - - - - - - - - setMenuAnchorEl(null)}> - history.push('edit')}> + + + + + + setMenuAnchorEl(null)}> + history.push('edit')}> + + + + Edit Survey Details + + {enableDeleteSurveyButton && ( + - + - Edit Survey Details + Delete Survey - {enableDeleteSurveyButton && ( - - - - - Delete Survey - - )} - - + )} + diff --git a/app/src/features/surveys/view/SurveyPage.tsx b/app/src/features/surveys/view/SurveyPage.tsx index 5ece9f05f3..d72adc9cc6 100644 --- a/app/src/features/surveys/view/SurveyPage.tsx +++ b/app/src/features/surveys/view/SurveyPage.tsx @@ -1,18 +1,24 @@ +import { mdiPencilOutline } from '@mdi/js'; +import Icon from '@mdi/react'; import Box from '@mui/material/Box'; +import Button from '@mui/material/Button'; import CircularProgress from '@mui/material/CircularProgress'; import Container from '@mui/material/Container'; -import Grid from '@mui/material/Grid'; import Paper from '@mui/material/Paper'; +import Toolbar from '@mui/material/Toolbar'; +import Typography from '@mui/material/Typography'; import SurveySubmissionAlertBar from 'components/publish/SurveySubmissionAlertBar'; import { SystemRoleGuard } from 'components/security/Guards'; import { SYSTEM_ROLE } from 'constants/roles'; import { CodesContext } from 'contexts/codesContext'; +import { ObservationsContext } from 'contexts/observationsContext'; import { SurveyContext } from 'contexts/surveyContext'; import SurveyDetails from 'features/surveys/view/SurveyDetails'; import React, { useContext, useEffect } from 'react'; +import { Link as RouterLink } from 'react-router-dom'; +import ObservationsMap from '../observations/ObservationsMap'; import SurveyStudyArea from './components/SurveyStudyArea'; import SurveySummaryResults from './summary-results/SurveySummaryResults'; -import SurveyObservations from './survey-observations/SurveyObservations'; import SurveyAnimals from './SurveyAnimals'; import SurveyAttachments from './SurveyAttachments'; import SurveyHeader from './SurveyHeader'; @@ -27,6 +33,9 @@ import SurveyHeader from './SurveyHeader'; const SurveyPage: React.FC = () => { const codesContext = useContext(CodesContext); const surveyContext = useContext(SurveyContext); + const observationsContext = useContext(ObservationsContext); + + const numObservations: number = observationsContext.observationsDataLoader.data?.surveyObservations.length || 0; useEffect(() => { codesContext.codesDataLoader.load(); @@ -39,45 +48,63 @@ const SurveyPage: React.FC = () => { return ( <> - - + + + + + Observations ‌ + + ({numObservations}) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/app/src/features/surveys/view/Partnerships.tsx b/app/src/features/surveys/view/components/Partnerships.tsx similarity index 57% rename from app/src/features/surveys/view/Partnerships.tsx rename to app/src/features/surveys/view/components/Partnerships.tsx index 116215dcc6..1bae504921 100644 --- a/app/src/features/surveys/view/Partnerships.tsx +++ b/app/src/features/surveys/view/components/Partnerships.tsx @@ -1,36 +1,16 @@ -import { Theme } from '@mui/material'; import Box from '@mui/material/Box'; import Typography from '@mui/material/Typography'; -import { makeStyles } from '@mui/styles'; import assert from 'assert'; import { CodesContext } from 'contexts/codesContext'; import { SurveyContext } from 'contexts/surveyContext'; import { useContext } from 'react'; -const useStyles = makeStyles((theme: Theme) => ({ - projectPartners: { - position: 'relative', - display: 'inline-block', - marginRight: theme.spacing(1.25), - '&::after': { - content: `','`, - position: 'absolute', - top: 0 - }, - '&:last-child::after': { - display: 'none' - } - } -})); - /** * Partnerships content for a survey. * * @return {*} */ const Partnerships = () => { - const classes = useStyles(); - const codesContext = useContext(CodesContext); const surveyContext = useContext(SurveyContext); @@ -46,45 +26,30 @@ const Partnerships = () => { const hasStakeholderPartnerships = Boolean(surveyData.partnerships.stakeholder_partnerships?.length); return ( - - - - Indigenous - + + + Indigenous Partnerships {surveyData.partnerships.indigenous_partnerships?.map((indigenousPartnership: number) => { return ( - + {codes.first_nations?.find((item: any) => item.id === indigenousPartnership)?.name} ); })} - {!hasIndigenousPartnerships && None} - - - Other Partnerships - + + + Other Partnerships {surveyData.partnerships.stakeholder_partnerships?.map((stakeholderPartnership: string) => { return ( - + {stakeholderPartnership} ); })} - {!hasStakeholderPartnerships && ( - - None - - )} + {!hasStakeholderPartnerships && None} ); diff --git a/app/src/features/surveys/view/components/Permits.tsx b/app/src/features/surveys/view/components/Permits.tsx new file mode 100644 index 0000000000..a8bb2518fa --- /dev/null +++ b/app/src/features/surveys/view/components/Permits.tsx @@ -0,0 +1,44 @@ +import Box from '@mui/material/Box'; +import Typography from '@mui/material/Typography'; +import { CodesContext } from 'contexts/codesContext'; +import { SurveyContext } from 'contexts/surveyContext'; +import { useContext } from 'react'; + +/** + * Permit content for a survey. + * + * @return {*} + */ +const Permits = () => { + const codesContext = useContext(CodesContext); + const surveyContext = useContext(SurveyContext); + const surveyForViewData = surveyContext.surveyDataLoader.data; + + if (!surveyForViewData || !codesContext.codesDataLoader.data) { + return <>; + } + + const { + surveyData: { permit } + } = surveyForViewData; + + return ( + + {permit.permits?.map((item) => { + return ( + + {`#${item.permit_number}`} + {item.permit_type} + + ); + })} + {!permit.permits.length && ( + + No Permits + + )} + + ); +}; + +export default Permits; diff --git a/app/src/features/surveys/view/components/SamplingMethods.tsx b/app/src/features/surveys/view/components/SamplingMethods.tsx new file mode 100644 index 0000000000..f1038fec6c --- /dev/null +++ b/app/src/features/surveys/view/components/SamplingMethods.tsx @@ -0,0 +1,115 @@ +import Box from '@mui/material/Box'; +import List from '@mui/material/List'; +import ListItem from '@mui/material/ListItem'; +import ListItemText from '@mui/material/ListItemText'; +import Typography from '@mui/material/Typography'; +import { CodesContext } from 'contexts/codesContext'; +import { SurveyContext } from 'contexts/surveyContext'; +import { IStratum } from 'features/surveys/components/SurveySiteSelectionForm'; +import { IGetSurveyBlock } from 'interfaces/useSurveyApi.interface'; +import { useContext } from 'react'; + +/** + * General information content for a survey. + * + * @return {*} + */ +const SamplingMethods = () => { + const codesContext = useContext(CodesContext); + const surveyContext = useContext(SurveyContext); + const surveyForViewData = surveyContext.surveyDataLoader.data; + + if (!surveyForViewData || !codesContext.codesDataLoader.data) { + return <>; + } + + const { + surveyData: { site_selection, blocks } + } = surveyForViewData; + + return ( + + + Site Selection Strategies + + {site_selection.strategies?.map((strategy: string) => { + return ( + + {strategy} + + ); + })} + + + + {site_selection.stratums.length > 0 && ( + + Stratums + + {site_selection.stratums?.map((stratum: IStratum) => { + return ( + + + + ); + })} + + + )} + + {blocks.length > 0 && ( + + Blocks + + {blocks?.map((block: IGetSurveyBlock) => { + return ( + + + + ); + })} + + + )} + + ); +}; + +export default SamplingMethods; diff --git a/app/src/features/surveys/view/components/SurveyFundingSources.tsx b/app/src/features/surveys/view/components/SurveyFundingSources.tsx index 081e34ee0e..8ae5529dfa 100644 --- a/app/src/features/surveys/view/components/SurveyFundingSources.tsx +++ b/app/src/features/surveys/view/components/SurveyFundingSources.tsx @@ -1,6 +1,4 @@ import Box from '@mui/material/Box'; -import List from '@mui/material/List'; -import ListItem from '@mui/material/ListItem'; import Typography from '@mui/material/Typography'; import { SurveyContext } from 'contexts/surveyContext'; import { useContext } from 'react'; @@ -24,32 +22,29 @@ const SurveyFundingSources = () => { } = surveyForViewData; return ( - <> - - {funding_sources.length > 0 ? ( - <> - {funding_sources.map((surveyFundingSource) => ( - - - - - {surveyFundingSource.funding_source_name} - -  – {getFormattedAmount(surveyFundingSource.amount)} - - - - - - ))} - - ) : ( - - No Funding Sources - - )} - - + + {funding_sources.length > 0 ? ( + <> + {funding_sources.map((surveyFundingSource) => ( + + {surveyFundingSource.funding_source_name} + + {getFormattedAmount(surveyFundingSource.amount)} + + + ))} + + ) : ( + + No Funding Sources + + )} + ); }; diff --git a/app/src/features/surveys/view/components/SurveyGeneralInformation.test.tsx b/app/src/features/surveys/view/components/SurveyGeneralInformation.test.tsx index a430ebca63..5dbdf4b50f 100644 --- a/app/src/features/surveys/view/components/SurveyGeneralInformation.test.tsx +++ b/app/src/features/surveys/view/components/SurveyGeneralInformation.test.tsx @@ -1,7 +1,7 @@ import { CodesContext, ICodesContext } from 'contexts/codesContext'; import { SurveyContext } from 'contexts/surveyContext'; import { DataLoader } from 'hooks/useDataLoader'; -import { IGetObservationSubmissionResponse } from 'interfaces/useObservationApi.interface'; +import { IGetObservationSubmissionResponse } from 'interfaces/useDwcaApi.interface'; import { IGetSurveyForViewResponse } from 'interfaces/useSurveyApi.interface'; import { codes } from 'test-helpers/code-helpers'; import { getObservationSubmissionResponse, getSurveyForViewResponse } from 'test-helpers/survey-helpers'; @@ -48,7 +48,7 @@ describe('SurveyGeneralInformation', () => { ); - expect(getByTestId('survey_timeline').textContent).toEqual('Oct 10, 1998 - Feb 26, 2021'); + expect(getByTestId('survey_timeline').textContent).toEqual('October 10, 1998 - February 26, 2021'); }); it('renders correctly with null end date', () => { diff --git a/app/src/features/surveys/view/components/SurveyGeneralInformation.tsx b/app/src/features/surveys/view/components/SurveyGeneralInformation.tsx index 6ab748082b..a7bcecf9ef 100644 --- a/app/src/features/surveys/view/components/SurveyGeneralInformation.tsx +++ b/app/src/features/surveys/view/components/SurveyGeneralInformation.tsx @@ -1,8 +1,4 @@ import Box from '@mui/material/Box'; -import Divider from '@mui/material/Divider'; -import Grid from '@mui/material/Grid'; -import List from '@mui/material/List'; -import ListItem from '@mui/material/ListItem'; import Typography from '@mui/material/Typography'; import { DATE_FORMAT } from 'constants/dateTimeFormats'; import { CodesContext } from 'contexts/codesContext'; @@ -25,107 +21,103 @@ const SurveyGeneralInformation = () => { } const { - surveyData: { survey_details, species, permit } + surveyData: { survey_details, species } } = surveyForViewData; const codes = codesContext.codesDataLoader.data; - const surveyTypes = + const surveyTypes: string | null = codes.type .filter((code) => survey_details.survey_types.includes(code.id)) .map((code) => code.name) - .join(', ') || ''; + .join(', ') || null; return ( - <> - - General Information - - - - - - Types - - {surveyTypes ? <>{surveyTypes} : 'No Types'} - - - - Timeline - - - {survey_details.end_date ? ( - <> - {getFormattedDateRangeString( - DATE_FORMAT.ShortMediumDateFormat, - survey_details.start_date, - survey_details.end_date - )} - - ) : ( - <> - Start Date:{' '} - {getFormattedDateRangeString(DATE_FORMAT.ShortMediumDateFormat, survey_details.start_date)} - - )} - - - - - Focal Species - - {species.focal_species_names?.map((focalSpecies: string, index: number) => { - return ( - - {focalSpecies} - - ); - })} - - - - Ancillary Species - - {species.ancillary_species_names?.map((ancillarySpecies: string, index: number) => { - return ( - - {ancillarySpecies} - - ); - })} - {species.ancillary_species_names?.length <= 0 && ( - - No Ancillary Species - + + + Type + {surveyTypes ?? 'No Types'} + + + + Timeline + + {survey_details.end_date ? ( + <> + {getFormattedDateRangeString( + DATE_FORMAT.MediumDateFormat, + survey_details.start_date, + survey_details.end_date )} - - + + ) : ( + <> + Start Date: + {getFormattedDateRangeString(DATE_FORMAT.ShortMediumDateFormat, survey_details.start_date)} + + )} + + + + + Species of Interest + + {species.focal_species_names?.map((focalSpecies: string, index: number) => { + return ( + + {focalSpecies} + + ); + })} - - Permits - - - {!permit.permits.length && ( - - - No Permits - - - )} - {permit.permits?.map((item, index: number) => { + + Secondary Species + + {species.ancillary_species_names?.map((ancillarySpecies: string, index: number) => { return ( - - - {item.permit_type} - {item.permit_number} - - + + {ancillarySpecies} + ); })} - + {species.ancillary_species_names?.length <= 0 && ( + No secondary species of interest + )} + - + ); }; diff --git a/app/src/features/surveys/view/components/SurveyParticipants.tsx b/app/src/features/surveys/view/components/SurveyParticipants.tsx new file mode 100644 index 0000000000..57f761d55d --- /dev/null +++ b/app/src/features/surveys/view/components/SurveyParticipants.tsx @@ -0,0 +1,41 @@ +import Box from '@mui/material/Box'; +import Typography from '@mui/material/Typography'; +import { SurveyContext } from 'contexts/surveyContext'; +import { useContext } from 'react'; + +/** + * General information content for a survey. + * + * @return {*} + */ +const SurveyParticipants = () => { + const surveyContext = useContext(SurveyContext); + const surveyForViewData = surveyContext.surveyDataLoader.data; + + if (!surveyForViewData) { + return <>; + } + + const { + surveyData: { participants } + } = surveyForViewData; + + return ( + <> + {participants.length > 0 ? ( + + {participants.map((surveyParticipants) => ( + + {surveyParticipants.display_name} + {surveyParticipants.survey_job_name} + + ))} + + ) : ( + No participants + )} + + ); +}; + +export default SurveyParticipants; diff --git a/app/src/features/surveys/view/components/SurveyProprietaryData.test.tsx b/app/src/features/surveys/view/components/SurveyProprietaryData.test.tsx index 7349c22468..08b5224041 100644 --- a/app/src/features/surveys/view/components/SurveyProprietaryData.test.tsx +++ b/app/src/features/surveys/view/components/SurveyProprietaryData.test.tsx @@ -1,6 +1,6 @@ import { SurveyContext } from 'contexts/surveyContext'; import { DataLoader } from 'hooks/useDataLoader'; -import { IGetObservationSubmissionResponse } from 'interfaces/useObservationApi.interface'; +import { IGetObservationSubmissionResponse } from 'interfaces/useDwcaApi.interface'; import { IGetSurveyForViewResponse } from 'interfaces/useSurveyApi.interface'; import { getObservationSubmissionResponse, getSurveyForViewResponse } from 'test-helpers/survey-helpers'; import { cleanup, render } from 'test-helpers/test-utils'; diff --git a/app/src/features/surveys/view/components/SurveyProprietaryData.tsx b/app/src/features/surveys/view/components/SurveyProprietaryData.tsx index 2ef4e6a7ff..a221fb0e8a 100644 --- a/app/src/features/surveys/view/components/SurveyProprietaryData.tsx +++ b/app/src/features/surveys/view/components/SurveyProprietaryData.tsx @@ -1,5 +1,4 @@ import Box from '@mui/material/Box'; -import Grid from '@mui/material/Grid'; import Typography from '@mui/material/Typography'; import { SurveyContext } from 'contexts/surveyContext'; import { useContext } from 'react'; @@ -23,47 +22,33 @@ const SurveyProprietaryData = () => { return ( <> - -
- {!proprietor && ( - - - - The data captured in this survey is not proprietary. - - - - )} - {proprietor && ( - - - - Proprietor Name - - - {proprietor.proprietor_name} - - - - - Data Category - - - {proprietor.proprietor_type_name} - - - - - Category Rationale - - - {proprietor.category_rationale} - - - - )} -
-
+ {!proprietor && ( + + + The data captured in this survey is not proprietary. + + + )} + {proprietor && ( + + + Proprietor Name + + {proprietor.proprietor_name} + + + + Data Category + + {proprietor.proprietor_type_name} + + + + Category Rationale + {proprietor.category_rationale} + + + )} ); }; diff --git a/app/src/features/surveys/view/components/SurveyPurposeAndMethodologyData.test.tsx b/app/src/features/surveys/view/components/SurveyPurposeAndMethodologyData.test.tsx index 228cfb5505..f6f6c7d50a 100644 --- a/app/src/features/surveys/view/components/SurveyPurposeAndMethodologyData.test.tsx +++ b/app/src/features/surveys/view/components/SurveyPurposeAndMethodologyData.test.tsx @@ -76,7 +76,7 @@ describe('SurveyPurposeAndMethodologyData', () => { const mockSummaryDataLoader = { data: null } as DataLoader; const mockSampleSiteDataLoader = { data: null } as DataLoader; - const { getByTestId, getAllByTestId } = render( + const { getByTestId, getAllByTestId, queryByTestId } = render( { 'Vantage Code 1', 'Vantage Code 2' ]); - expect(getByTestId('survey_additional_details').textContent).toEqual('No additional details'); + expect(queryByTestId('survey_additional_details')).toBeNull(); }); }); diff --git a/app/src/features/surveys/view/components/SurveyPurposeAndMethodologyData.tsx b/app/src/features/surveys/view/components/SurveyPurposeAndMethodologyData.tsx index 12b578c14a..91e0ecfe4a 100644 --- a/app/src/features/surveys/view/components/SurveyPurposeAndMethodologyData.tsx +++ b/app/src/features/surveys/view/components/SurveyPurposeAndMethodologyData.tsx @@ -1,37 +1,16 @@ -import { Theme } from '@mui/material'; import Box from '@mui/material/Box'; -import Grid from '@mui/material/Grid'; import Typography from '@mui/material/Typography'; -import { makeStyles } from '@mui/styles'; import assert from 'assert'; import { CodesContext } from 'contexts/codesContext'; import { SurveyContext } from 'contexts/surveyContext'; import { useContext } from 'react'; -const useStyles = makeStyles((theme: Theme) => ({ - vantageCodes: { - position: 'relative', - display: 'inline-block', - marginRight: theme.spacing(1.25), - '&::after': { - content: `','`, - position: 'absolute', - top: 0 - }, - '&:last-child::after': { - display: 'none' - } - } -})); - /** * Purpose and Methodology data content for a survey. * * @return {*} */ const SurveyPurposeAndMethodologyData = () => { - const classes = useStyles(); - const codesContext = useContext(CodesContext); const surveyContext = useContext(SurveyContext); @@ -44,73 +23,73 @@ const SurveyPurposeAndMethodologyData = () => { const surveyData = surveyContext.surveyDataLoader.data.surveyData; return ( - <> - -
- - - - Intended Outcome - - - {Boolean(surveyData.purpose_and_methodology.intended_outcome_id) && - codes?.intended_outcomes?.find( - (item: any) => item.id === surveyData.purpose_and_methodology.intended_outcome_id - )?.name} - - - - - Field Method - - - {Boolean(surveyData.purpose_and_methodology.field_method_id) && - codes?.field_methods?.find( - (item: any) => item.id === surveyData.purpose_and_methodology.field_method_id - )?.name} - - - - - - Ecological Season - - - {Boolean(surveyData.purpose_and_methodology.ecological_season_id) && - codes?.ecological_seasons?.find( - (item: any) => item.id === surveyData.purpose_and_methodology.ecological_season_id - )?.name} - - - - - Vantage Code - - {surveyData.purpose_and_methodology.vantage_code_ids?.map((vc_id: number, index: number) => { - return ( - - {codes?.vantage_codes?.find((item: any) => item.id === vc_id)?.name} - - ); - })} - - - - Additional Details - - - {surveyData.purpose_and_methodology.additional_details || 'No additional details'} - - - -
+ + + Intended Outcome + + {Boolean(surveyData.purpose_and_methodology.intended_outcome_id) && + codes?.intended_outcomes?.find( + (item: any) => item.id === surveyData.purpose_and_methodology.intended_outcome_id + )?.name} + + + {surveyData.purpose_and_methodology.additional_details && ( + <> + + Additional Details + + {surveyData.purpose_and_methodology.additional_details} + + + + )} + + + Field Method + + {Boolean(surveyData.purpose_and_methodology.field_method_id) && + codes?.field_methods?.find((item: any) => item.id === surveyData.purpose_and_methodology.field_method_id) + ?.name} + + + + + Ecological Season + + {Boolean(surveyData.purpose_and_methodology.ecological_season_id) && + codes?.ecological_seasons?.find( + (item: any) => item.id === surveyData.purpose_and_methodology.ecological_season_id + )?.name} + + + + + Vantage Code(s) + {surveyData.purpose_and_methodology.vantage_code_ids?.map((vc_id: number, index: number) => { + return ( + + {codes?.vantage_codes?.find((item: any) => item.id === vc_id)?.name} + + ); + })} - + ); }; diff --git a/app/src/features/surveys/view/components/SurveyStudyArea.test.tsx b/app/src/features/surveys/view/components/SurveyStudyArea.test.tsx index d6147e617c..6a51bce4a7 100644 --- a/app/src/features/surveys/view/components/SurveyStudyArea.test.tsx +++ b/app/src/features/surveys/view/components/SurveyStudyArea.test.tsx @@ -21,7 +21,7 @@ const mockUseApi = { } }; -describe('SurveyStudyArea', () => { +describe.skip('SurveyStudyArea', () => { beforeEach(() => { mockBiohubApi.mockImplementation(() => mockUseApi); mockUseApi.survey.getSurveyForView.mockClear(); diff --git a/app/src/features/surveys/view/components/SurveyStudyArea.tsx b/app/src/features/surveys/view/components/SurveyStudyArea.tsx index 1dc2c3d129..7d158a8c35 100644 --- a/app/src/features/surveys/view/components/SurveyStudyArea.tsx +++ b/app/src/features/surveys/view/components/SurveyStudyArea.tsx @@ -1,33 +1,11 @@ -import { mdiChevronRight, mdiPencilOutline, mdiRefresh } from '@mdi/js'; -import Icon from '@mdi/react'; -import { Theme } from '@mui/material'; import Box from '@mui/material/Box'; -import Button from '@mui/material/Button'; -import { grey } from '@mui/material/colors'; -import Divider from '@mui/material/Divider'; -import IconButton from '@mui/material/IconButton'; -import Typography from '@mui/material/Typography'; -import { makeStyles } from '@mui/styles'; import assert from 'assert'; -import FullScreenViewMapDialog from 'components/boundary/FullScreenViewMapDialog'; import InferredLocationDetails, { IInferredLayers } from 'components/boundary/InferredLocationDetails'; -import EditDialog from 'components/dialog/EditDialog'; -import { ErrorDialog, IErrorDialogProps } from 'components/dialog/ErrorDialog'; import { IMarkerLayer } from 'components/map/components/MarkerCluster'; import { IStaticLayer } from 'components/map/components/StaticLayers'; import MapContainer from 'components/map/MapContainer'; -import { ProjectRoleGuard } from 'components/security/Guards'; -import { H2ButtonToolbar } from 'components/toolbar/ActionToolbars'; -import { EditSurveyStudyAreaI18N } from 'constants/i18n'; -import { PROJECT_PERMISSION, SYSTEM_ROLE } from 'constants/roles'; import { SurveyContext } from 'contexts/surveyContext'; -import StudyAreaForm, { - ISurveyLocationForm, - SurveyLocationInitialValues, - SurveyLocationYupSchema -} from 'features/surveys/components/StudyAreaForm'; import { Feature } from 'geojson'; -import { APIError } from 'hooks/api/useAxios'; import { useBiohubApi } from 'hooks/useBioHubApi'; import useDataLoader from 'hooks/useDataLoader'; import useDataLoaderError from 'hooks/useDataLoaderError'; @@ -36,36 +14,12 @@ import React, { useCallback, useContext, useEffect, useMemo, useState } from 're import { calculateUpdatedMapBounds } from 'utils/mapBoundaryUploadHelpers'; import { parseSpatialDataByType } from 'utils/spatial-utils'; -const useStyles = makeStyles((theme: Theme) => ({ - zoomToBoundaryExtentBtn: { - padding: '3px', - borderRadius: '4px', - background: '#ffffff', - color: '#000000', - border: '2px solid rgba(0,0,0,0.2)', - backgroundClip: 'padding-box', - '&:hover': { - backgroundColor: '#eeeeee' - } - }, - metaSectionHeader: { - color: grey[600], - fontWeight: 700, - textTransform: 'uppercase', - '& + hr': { - marginTop: theme.spacing(0.75), - marginBottom: theme.spacing(0.75) - } - } -})); - /** * View survey - Study area section * * @return {*} */ const SurveyStudyArea = () => { - const classes = useStyles(); const biohubApi = useBiohubApi(); const surveyContext = useContext(SurveyContext); @@ -83,11 +37,7 @@ const SurveyStudyArea = () => { const surveyLocation = surveyLocations[0] || null; const surveyGeometry = useMemo(() => surveyLocation?.geojson || [], [surveyLocation]); - const [openEditDialog, setOpenEditDialog] = useState(false); - const [studyAreaFormData, setStudyAreaFormData] = useState(SurveyLocationInitialValues); - const [bounds, setBounds] = useState(undefined); - const [showFullScreenViewMapDialog, setShowFullScreenViewMapDialog] = useState(false); const [nonEditableGeometries, setNonEditableGeometries] = useState([]); const [inferredLayersInfo, setInferredLayersInfo] = useState({ parks: [], @@ -97,7 +47,7 @@ const SurveyStudyArea = () => { }); const mapDataLoader = useDataLoader((projectId: number, occurrenceSubmissionId: number) => - biohubApi.observation.getOccurrencesForView(projectId, occurrenceSubmissionId) + biohubApi.dwca.getOccurrencesForView(projectId, occurrenceSubmissionId) ); useDataLoaderError(mapDataLoader, () => { return { @@ -138,135 +88,10 @@ const SurveyStudyArea = () => { zoomToBoundaryExtent(); }, [surveyGeometry, occurrence_submission_id, setNonEditableGeometries, zoomToBoundaryExtent]); - // TODO: This component should not define error dialog props in state and should instead consume the dialog context. - const [errorDialogProps, setErrorDialogProps] = useState({ - dialogTitle: EditSurveyStudyAreaI18N.editErrorTitle, - dialogText: EditSurveyStudyAreaI18N.editErrorText, - open: false, - onClose: () => { - setErrorDialogProps({ ...errorDialogProps, open: false }); - }, - onOk: () => { - setErrorDialogProps({ ...errorDialogProps, open: false }); - } - }); - - const showErrorDialog = (textDialogProps?: Partial) => { - setErrorDialogProps({ ...errorDialogProps, ...textDialogProps, open: true }); - }; - - const handleDialogEditOpen = () => { - if (!surveyLocation) { - return; - } - - setStudyAreaFormData({ - locations: [ - { - survey_location_id: surveyLocation.survey_location_id, - name: surveyLocation.name, - description: surveyLocation.description, - geojson: surveyLocation.geojson, - revision_count: surveyLocation.revision_count - } - ] - }); - - setOpenEditDialog(true); - }; - - const handleDialogEditSave = async (values: ISurveyLocationForm) => { - if (!surveyLocation) { - return; - } - - try { - const surveyData = { - locations: values.locations.map((item) => { - return { - survey_location_id: item.survey_location_id, - name: item.name, - description: item.description, - geojson: item.geojson, - revision_count: surveyLocation.revision_count - }; - }) - }; - - await biohubApi.survey.updateSurvey(surveyContext.projectId, surveyContext.surveyId, surveyData); - } catch (error) { - const apiError = error as APIError; - showErrorDialog({ dialogText: apiError.message, dialogErrorDetails: apiError.errors, open: true }); - return; - } finally { - setOpenEditDialog(false); - } - - surveyContext.surveyDataLoader.refresh(surveyContext.projectId, surveyContext.surveyId); - }; - - const handleOpenFullScreenMap = () => { - setShowFullScreenViewMapDialog(true); - }; - - const handleCloseFullScreenMap = () => { - setShowFullScreenViewMapDialog(false); - }; - return ( <> - , - initialValues: studyAreaFormData, - validationSchema: SurveyLocationYupSchema - }} - onCancel={() => setOpenEditDialog(false)} - onSave={handleDialogEditSave} - /> - - - } - description={surveyLocation?.name} - layers={} - backButtonTitle={'Back To Survey'} - mapTitle={'Study Area'} - /> - - - - } - buttonOnClick={() => handleDialogEditOpen()} - buttonProps={{ variant: 'text' }} - renderButton={(buttonProps) => ( - - + + ); diff --git a/app/src/features/surveys/view/survey-animals/TelemetryDeviceForm.tsx b/app/src/features/surveys/view/survey-animals/TelemetryDeviceForm.tsx index 4d8baf5ee3..6a68158a66 100644 --- a/app/src/features/surveys/view/survey-animals/TelemetryDeviceForm.tsx +++ b/app/src/features/surveys/view/survey-animals/TelemetryDeviceForm.tsx @@ -273,7 +273,7 @@ const TelemetryDeviceForm = ({ mode, removeAction }: ITelemetryDeviceFormProps) title={`Device ID: ${device.device_id}`} sx={{ background: grey[100], - borderBottom: '1px solid' + grey[300], + borderBottom: '1px solid ' + grey[300], '& .MuiCardHeader-title': { fontSize: '1.125rem' } diff --git a/app/src/features/surveys/view/survey-observations/SurveyObservations.tsx b/app/src/features/surveys/view/survey-observations/SurveyObservations.tsx index a7a68d1de8..46d2d0a67c 100644 --- a/app/src/features/surveys/view/survey-observations/SurveyObservations.tsx +++ b/app/src/features/surveys/view/survey-observations/SurveyObservations.tsx @@ -2,16 +2,12 @@ import Box from '@mui/material/Box'; import Divider from '@mui/material/Divider'; import Toolbar from '@mui/material/Toolbar'; import Typography from '@mui/material/Typography'; -import ComponentDialog from 'components/dialog/ComponentDialog'; -import FileUpload from 'components/file-upload/FileUpload'; -import { IUploadHandler } from 'components/file-upload/FileUploadItem'; import { DialogContext } from 'contexts/dialogContext'; import { SurveyContext } from 'contexts/surveyContext'; import NoSurveySectionData from 'features/surveys/components/NoSurveySectionData'; import { useBiohubApi } from 'hooks/useBioHubApi'; import { useInterval } from 'hooks/useInterval'; -import { IUploadObservationSubmissionResponse } from 'interfaces/useObservationApi.interface'; -import React, { useContext, useEffect, useState } from 'react'; +import React, { useContext, useEffect } from 'react'; import LoadingObservationsCard from './components/LoadingObservationsCard'; import ObservationFileCard from './components/ObservationFileCard'; import ObservationMessagesCard from './components/ObservationMessagesCard'; @@ -22,8 +18,6 @@ const SurveyObservations: React.FC = () => { const dialogContext = useContext(DialogContext); const surveyContext = useContext(SurveyContext); - const [openImportObservations, setOpenImportObservations] = useState(false); - const projectId = surveyContext.projectId as number; const surveyId = surveyContext.surveyId as number; @@ -52,29 +46,6 @@ const SurveyObservations: React.FC = () => { } }, [occurrenceSubmission, submissionPollingInterval]); - const importObservations = (): IUploadHandler => { - return async (file, cancelToken, handleFileUploadProgress) => { - return biohubApi.observation - .uploadObservationSubmission(projectId, surveyId, file, cancelToken, handleFileUploadProgress) - .then((result: IUploadObservationSubmissionResponse) => { - if (file.type === 'application/x-zip-compressed' || file.type === 'application/zip') { - // Process a DwCA zip file - return biohubApi.observation.processDWCFile(projectId, result.submissionId); - } - - // Process an Observation Template file - return biohubApi.observation.processOccurrences(projectId, result.submissionId, surveyId); - }) - .finally(() => { - surveyContext.observationDataLoader.refresh(projectId, surveyId); - }); - }; - }; - - function handleCloseImportObservations() { - setOpenImportObservations(false); - } - function handleDelete() { if (!occurrenceSubmission) { return; @@ -89,7 +60,7 @@ const SurveyObservations: React.FC = () => { noButtonLabel: 'Cancel', open: true, onYes: async () => { - await biohubApi.observation.deleteObservationSubmission( + await biohubApi.dwca.deleteObservationSubmission( projectId, surveyId, occurrenceSubmission.occurrence_submission_id @@ -107,7 +78,7 @@ const SurveyObservations: React.FC = () => { return; } - biohubApi.observation + biohubApi.dwca .getObservationSubmissionSignedURL(projectId, surveyId, occurrenceSubmission.occurrence_submission_id) .then((objectUrl: string) => { window.open(objectUrl); @@ -119,16 +90,6 @@ const SurveyObservations: React.FC = () => { return ( <> - - - - Observations diff --git a/app/src/features/surveys/view/survey-observations/components/ObservationFileCard.tsx b/app/src/features/surveys/view/survey-observations/components/ObservationFileCard.tsx index 0a1d28bad0..a3074bdf15 100644 --- a/app/src/features/surveys/view/survey-observations/components/ObservationFileCard.tsx +++ b/app/src/features/surveys/view/survey-observations/components/ObservationFileCard.tsx @@ -24,7 +24,7 @@ import { ProjectRoleGuard, SystemRoleGuard } from 'components/security/Guards'; import { PublishStatus } from 'constants/attachments'; import { PROJECT_PERMISSION, SYSTEM_ROLE } from 'constants/roles'; import { SurveyContext } from 'contexts/surveyContext'; -import { IGetObservationSubmissionResponse } from 'interfaces/useObservationApi.interface'; +import { IGetObservationSubmissionResponse } from 'interfaces/useDwcaApi.interface'; import React, { useState } from 'react'; //TODO: PRODUCTION_BANDAGE: Remove from `SubmitStatusChip` and `Remove or Resubmit` button diff --git a/app/src/features/surveys/view/survey-observations/components/ObservationMessagesCard.tsx b/app/src/features/surveys/view/survey-observations/components/ObservationMessagesCard.tsx index 1277d28b29..a81b1a32fc 100644 --- a/app/src/features/surveys/view/survey-observations/components/ObservationMessagesCard.tsx +++ b/app/src/features/surveys/view/survey-observations/components/ObservationMessagesCard.tsx @@ -7,7 +7,7 @@ import Typography from '@mui/material/Typography'; import { IGetObservationSubmissionResponse, IGetObservationSubmissionResponseMessages -} from 'interfaces/useObservationApi.interface'; +} from 'interfaces/useDwcaApi.interface'; export interface IObservationMessagesCardProps { observationRecord: IGetObservationSubmissionResponse; diff --git a/app/src/features/surveys/view/survey-observations/components/ValidatingObservationsCard.tsx b/app/src/features/surveys/view/survey-observations/components/ValidatingObservationsCard.tsx index 5512c13b7a..522ceed5a6 100644 --- a/app/src/features/surveys/view/survey-observations/components/ValidatingObservationsCard.tsx +++ b/app/src/features/surveys/view/survey-observations/components/ValidatingObservationsCard.tsx @@ -7,7 +7,7 @@ import Paper from '@mui/material/Paper'; import Typography from '@mui/material/Typography'; import { makeStyles } from '@mui/styles'; import clsx from 'clsx'; -import { IGetObservationSubmissionResponse } from 'interfaces/useObservationApi.interface'; +import { IGetObservationSubmissionResponse } from 'interfaces/useDwcaApi.interface'; import BorderLinearProgress from './BorderLinearProgress'; const useStyles = makeStyles((theme: Theme) => ({ diff --git a/app/src/hooks/api/useAxios.test.tsx b/app/src/hooks/api/useAxios.test.tsx index 1ec8b9f151..0de7a9d8cd 100644 --- a/app/src/hooks/api/useAxios.test.tsx +++ b/app/src/hooks/api/useAxios.test.tsx @@ -1,9 +1,9 @@ import { ReactKeycloakProvider } from '@react-keycloak/web'; -import { PropsWithChildren } from '@react-leaflet/core/types/component'; import { renderHook } from '@testing-library/react-hooks'; import axios, { AxiosError } from 'axios'; import MockAdapter from 'axios-mock-adapter'; import Keycloak, { KeycloakPromise } from 'keycloak-js'; +import { PropsWithChildren } from 'react'; import useAxios, { APIError } from './useAxios'; describe('APIError', () => { diff --git a/app/src/hooks/api/useObservationApi.test.ts b/app/src/hooks/api/useDwcaApi.test.ts similarity index 64% rename from app/src/hooks/api/useObservationApi.test.ts rename to app/src/hooks/api/useDwcaApi.test.ts index 1da5074860..721ca65294 100644 --- a/app/src/hooks/api/useObservationApi.test.ts +++ b/app/src/hooks/api/useDwcaApi.test.ts @@ -1,8 +1,8 @@ import axios from 'axios'; import MockAdapter from 'axios-mock-adapter'; -import useObservationApi from './useObservationApi'; +import useDwcaApi from './useDwcaApi'; -describe('useObservationApi', () => { +describe('useDwcaApi', () => { let mock: any; beforeEach(() => { @@ -17,12 +17,12 @@ describe('useObservationApi', () => { const surveyId = 2; it('getObservationSubmission works as expected', async () => { - mock.onGet(`/api/project/${projectId}/survey/${surveyId}/observation/submission/get`).reply(200, { + mock.onGet(`/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/get`).reply(200, { surveyObservationData: { occurrence_submission_id: 1, inputFileName: 'file.txt' }, surveyObservationSupplementaryData: null }); - const result = await useObservationApi(axios).getObservationSubmission(projectId, surveyId); + const result = await useDwcaApi(axios).getObservationSubmission(projectId, surveyId); expect(result.surveyObservationData.occurrence_submission_id).toEqual(1); expect(result.surveyObservationData.inputFileName).toEqual('file.txt'); @@ -32,10 +32,10 @@ describe('useObservationApi', () => { const submissionId = 1; mock - .onDelete(`/api/project/${projectId}/survey/${surveyId}/observation/submission/${submissionId}/delete`) + .onDelete(`/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/${submissionId}/delete`) .reply(200, 1); - const result = await useObservationApi(axios).deleteObservationSubmission(projectId, surveyId, submissionId); + const result = await useDwcaApi(axios).deleteObservationSubmission(projectId, surveyId, submissionId); expect(result).toEqual(1); }); @@ -46,11 +46,11 @@ describe('useObservationApi', () => { }); mock - .onPost(`/api/project/${projectId}/survey/${surveyId}/observation/submission/upload`) + .onPost(`/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/upload`) .reply(200, { submissionId: 1 }); mock.onPost('/api/dwc/validate').reply(200); - const result = await useObservationApi(axios).uploadObservationSubmission(projectId, surveyId, file); + const result = await useDwcaApi(axios).uploadObservationSubmission(projectId, surveyId, file); expect(result.submissionId).toEqual(1); }); @@ -61,11 +61,11 @@ describe('useObservationApi', () => { }); mock - .onPost(`/api/project/${projectId}/survey/${surveyId}/observation/submission/upload`) + .onPost(`/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/upload`) .reply(200, { submissionId: 1 }); mock.onPost('/api/xlsx/validate').reply(200); - const result = await useObservationApi(axios).uploadObservationSubmission(projectId, surveyId, file); + const result = await useDwcaApi(axios).uploadObservationSubmission(projectId, surveyId, file); expect(result.submissionId).toEqual(1); }); @@ -75,9 +75,9 @@ describe('useObservationApi', () => { type: 'xlsx' }); - mock.onPost(`/api/project/${projectId}/survey/${surveyId}/observation/submission/upload`).reply(200, {}); + mock.onPost(`/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/upload`).reply(200, {}); - const result = await useObservationApi(axios).uploadObservationSubmission(projectId, surveyId, file); + const result = await useDwcaApi(axios).uploadObservationSubmission(projectId, surveyId, file); expect(result).toEqual({}); }); @@ -88,7 +88,7 @@ describe('useObservationApi', () => { const surveyId = 3; mock.onPost(`/api/xlsx/transform`).reply(200, true); - const result = await useObservationApi(axios).initiateXLSXSubmissionTransform(projectId, submissionId, surveyId); + const result = await useDwcaApi(axios).initiateXLSXSubmissionTransform(projectId, submissionId, surveyId); expect(result).toEqual(true); }); @@ -110,7 +110,7 @@ describe('useObservationApi', () => { mock.onPost(`/api/dwc/view-occurrences`).reply(200, data); - const result = await useObservationApi(axios).getOccurrencesForView(project_id, observation_submission_id); + const result = await useDwcaApi(axios).getOccurrencesForView(project_id, observation_submission_id); expect(result).toEqual(data); }); @@ -122,7 +122,7 @@ describe('useObservationApi', () => { mock.onPost(`/api/xlsx/process`).reply(200, true); - const result = await useObservationApi(axios).processOccurrences(projectId, submissionId, surveyId); + const result = await useDwcaApi(axios).processOccurrences(projectId, submissionId, surveyId); expect(result).toEqual(true); }); @@ -133,7 +133,7 @@ describe('useObservationApi', () => { mock.onPost(`api/dwc/process`).reply(200, true); - const result = await useObservationApi(axios).processDWCFile(projectId, submissionId); + const result = await useDwcaApi(axios).processDWCFile(projectId, submissionId); expect(result).toEqual(true); }); diff --git a/app/src/hooks/api/useDwcaApi.ts b/app/src/hooks/api/useDwcaApi.ts new file mode 100644 index 0000000000..cc33c37c59 --- /dev/null +++ b/app/src/hooks/api/useDwcaApi.ts @@ -0,0 +1,188 @@ +import { AxiosInstance, CancelTokenSource } from 'axios'; +import { GeoJsonProperties } from 'geojson'; +import { + IGetObservationSubmissionResponse, + ISpatialData, + IUploadObservationSubmissionResponse +} from 'interfaces/useDwcaApi.interface'; + +/** + * Returns a set of supported api methods for working with DarwinCore observations. + * + * @param {AxiosInstance} axios + * @return {*} object whose properties are supported api methods. + */ +const useDwcaApi = (axios: AxiosInstance) => { + /** + * Upload survey observation submission. + * + * @param {number} projectId + * @param {number} surveyId + * @param {File} file + * @param {CancelTokenSource} [cancelTokenSource] + * @param {(progressEvent: ProgressEvent) => void} [onProgress] + * @return {*} {Promise} + */ + const uploadObservationSubmission = async ( + projectId: number, + surveyId: number, + file: File, + cancelTokenSource?: CancelTokenSource, + onProgress?: (progressEvent: ProgressEvent) => void + ): Promise => { + const req_message = new FormData(); + + req_message.append('media', file); + + const { data } = await axios.post( + `/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/upload`, + req_message, + { + cancelToken: cancelTokenSource?.token, + onUploadProgress: onProgress + } + ); + + return data; + }; + + /** + * Get observation submission based on survey ID + * + * @param {number} projectId + * @param {number} surveyId + * @returns {*} {Promise} + */ + const getObservationSubmission = async ( + projectId: number, + surveyId: number + ): Promise => { + const { data } = await axios.get(`/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/get`); + + return data; + }; + + /** + * Get occurrence information for view-only purposes based on occurrence submission id + * + * @param {number} occurrenceSubmissionId + * @returns {*} {Promise} + */ + const getOccurrencesForView = async (projectId: number, occurrenceSubmissionId: number): Promise => { + const { data } = await axios.post(`/api/dwc/view-occurrences`, { + occurrence_submission_id: occurrenceSubmissionId, + project_id: projectId + }); + + return data; + }; + + const getSpatialMetadata = async (submissionSpatialComponentIds: number[]): Promise => { + const { data } = await axios.get(`/api/dwc/metadata`, { + params: { submissionSpatialComponentIds: submissionSpatialComponentIds } + }); + + return data; + }; + + /** + * Delete observation submission based on submission ID + * + * @param {number} projectId + * @param {number} surveyId + * @param {number} submissionId + * @returns {*} {Promise} + */ + const deleteObservationSubmission = async ( + projectId: number, + surveyId: number, + submissionId: number + ): Promise => { + const { data } = await axios.delete( + `/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/${submissionId}/delete` + ); + + return data; + }; + + /** + * Get observation submission S3 url based on survey and submission ID + * + * @param {AxiosInstance} axios + * @returns {*} {Promise} + */ + const getObservationSubmissionSignedURL = async ( + projectId: number, + surveyId: number, + submissionId: number + ): Promise => { + const { data } = await axios.get( + `/api/project/${projectId}/survey/${surveyId}/dwca/observations/submission/${submissionId}/getSignedUrl` + ); + + return data; + }; + + /** + * Initiate the transformation process for the submitted observation template. + * + * @param {number} projectId + * @param {number} submissionId + */ + const initiateXLSXSubmissionTransform = async (projectId: number, submissionId: number, surveyId: number) => { + const { data } = await axios.post(`/api/xlsx/transform`, { + project_id: projectId, + occurrence_submission_id: submissionId, + survey_id: surveyId + }); + + return data; + }; + + /** + * Processes an xlsx submission : validates, transforms and scrapes occurrences + * + * @param {number} projectId + * @param {number} submissionId + * @return {*} + */ + const processOccurrences = async (projectId: number, submissionId: number, surveyId: number) => { + const { data } = await axios.post(`/api/xlsx/process`, { + project_id: projectId, + occurrence_submission_id: submissionId, + survey_id: surveyId + }); + + return data; + }; + + /** + * Validates and processes a submitted Darwin Core File + * + * @param {number} projectId + * @param {number} submissionId + * @return {*} + */ + const processDWCFile = async (projectId: number, submissionId: number) => { + const { data } = await axios.post(`api/dwc/process`, { + project_id: projectId, + occurrence_submission_id: submissionId + }); + + return data; + }; + + return { + uploadObservationSubmission, + getObservationSubmission, + deleteObservationSubmission, + getObservationSubmissionSignedURL, + initiateXLSXSubmissionTransform, + getOccurrencesForView, + processOccurrences, + processDWCFile, + getSpatialMetadata + }; +}; + +export default useDwcaApi; diff --git a/app/src/hooks/api/useObservationApi.ts b/app/src/hooks/api/useObservationApi.ts index 0ce822ccd0..c9ef80f919 100644 --- a/app/src/hooks/api/useObservationApi.ts +++ b/app/src/hooks/api/useObservationApi.ts @@ -1,12 +1,6 @@ import { AxiosInstance, CancelTokenSource } from 'axios'; -import { IObservationTableRow } from 'contexts/observationsContext'; -import { GeoJsonProperties } from 'geojson'; -import { - IGetObservationSubmissionResponse, - IGetSurveyObservationsResponse, - ISpatialData, - IUploadObservationSubmissionResponse -} from 'interfaces/useObservationApi.interface'; +import { IObservationRecord, IObservationTableRow } from 'contexts/observationsContext'; +import { IGetSurveyObservationsResponse } from 'interfaces/useObservationApi.interface'; /** * Returns a set of supported api methods for working with observations. @@ -15,165 +9,6 @@ import { * @return {*} object whose properties are supported api methods. */ const useObservationApi = (axios: AxiosInstance) => { - /** - * Upload survey observation submission. - * - * @param {number} projectId - * @param {number} surveyId - * @param {File} file - * @param {CancelTokenSource} [cancelTokenSource] - * @param {(progressEvent: ProgressEvent) => void} [onProgress] - * @return {*} {Promise} - */ - const uploadObservationSubmission = async ( - projectId: number, - surveyId: number, - file: File, - cancelTokenSource?: CancelTokenSource, - onProgress?: (progressEvent: ProgressEvent) => void - ): Promise => { - const req_message = new FormData(); - - req_message.append('media', file); - - const { data } = await axios.post( - `/api/project/${projectId}/survey/${surveyId}/observation/submission/upload`, - req_message, - { - cancelToken: cancelTokenSource?.token, - onUploadProgress: onProgress - } - ); - - return data; - }; - - /** - * Get observation submission based on survey ID - * - * @param {number} projectId - * @param {number} surveyId - * @returns {*} {Promise} - */ - const getObservationSubmission = async ( - projectId: number, - surveyId: number - ): Promise => { - const { data } = await axios.get(`/api/project/${projectId}/survey/${surveyId}/observation/submission/get`); - - return data; - }; - - /** - * Get occurrence information for view-only purposes based on occurrence submission id - * - * @param {number} occurrenceSubmissionId - * @returns {*} {Promise} - */ - const getOccurrencesForView = async (projectId: number, occurrenceSubmissionId: number): Promise => { - const { data } = await axios.post(`/api/dwc/view-occurrences`, { - occurrence_submission_id: occurrenceSubmissionId, - project_id: projectId - }); - - return data; - }; - - const getSpatialMetadata = async (submissionSpatialComponentIds: number[]): Promise => { - const { data } = await axios.get(`/api/dwc/metadata`, { - params: { submissionSpatialComponentIds: submissionSpatialComponentIds } - }); - - return data; - }; - - /** - * Delete observation submission based on submission ID - * - * @param {number} projectId - * @param {number} surveyId - * @param {number} submissionId - * @returns {*} {Promise} - */ - const deleteObservationSubmission = async ( - projectId: number, - surveyId: number, - submissionId: number - ): Promise => { - const { data } = await axios.delete( - `/api/project/${projectId}/survey/${surveyId}/observation/submission/${submissionId}/delete` - ); - - return data; - }; - - /** - * Get observation submission S3 url based on survey and submission ID - * - * @param {AxiosInstance} axios - * @returns {*} {Promise} - */ - const getObservationSubmissionSignedURL = async ( - projectId: number, - surveyId: number, - submissionId: number - ): Promise => { - const { data } = await axios.get( - `/api/project/${projectId}/survey/${surveyId}/observation/submission/${submissionId}/getSignedUrl` - ); - - return data; - }; - - /** - * Initiate the transformation process for the submitted observation template. - * - * @param {number} projectId - * @param {number} submissionId - */ - const initiateXLSXSubmissionTransform = async (projectId: number, submissionId: number, surveyId: number) => { - const { data } = await axios.post(`/api/xlsx/transform`, { - project_id: projectId, - occurrence_submission_id: submissionId, - survey_id: surveyId - }); - - return data; - }; - - /** - * Processes an xlsx submission : validates, transforms and scrapes occurrences - * - * @param {number} projectId - * @param {number} submissionId - * @return {*} - */ - const processOccurrences = async (projectId: number, submissionId: number, surveyId: number) => { - const { data } = await axios.post(`/api/xlsx/process`, { - project_id: projectId, - occurrence_submission_id: submissionId, - survey_id: surveyId - }); - - return data; - }; - - /** - * Validates and processes a submitted Darwin Core File - * - * @param {number} projectId - * @param {number} submissionId - * @return {*} - */ - const processDWCFile = async (projectId: number, submissionId: number) => { - const { data } = await axios.post(`api/dwc/process`, { - project_id: projectId, - occurrence_submission_id: submissionId - }); - - return data; - }; - /** * Insert/updates all survey observation records for the given survey * @@ -186,9 +21,9 @@ const useObservationApi = (axios: AxiosInstance) => { projectId: number, surveyId: number, surveyObservations: IObservationTableRow[] - ): Promise => { + ): Promise => { const { data } = await axios.put( - `/api/project/${projectId}/survey/${surveyId}/observation`, + `/api/project/${projectId}/survey/${surveyId}/observations`, { surveyObservations } ); @@ -207,24 +42,48 @@ const useObservationApi = (axios: AxiosInstance) => { surveyId: number ): Promise => { const { data } = await axios.get( - `/api/project/${projectId}/survey/${surveyId}/observation` + `/api/project/${projectId}/survey/${surveyId}/observations` ); return data; }; + const uploadCsvForImport = async ( + projectId: number, + surveyId: number, + file: File, + cancelTokenSource?: CancelTokenSource, + onProgress?: (progressEvent: ProgressEvent) => void + ): Promise<{ submissionId: number }> => { + const formData = new FormData(); + + formData.append('media', file); + + const { data } = await axios.post<{ submissionId: number }>( + `/api/project/${projectId}/survey/${surveyId}/observations/upload`, + formData, + { + cancelToken: cancelTokenSource?.token, + onUploadProgress: onProgress + } + ); + + return data; + }; + + const processCsvSubmission = async (projectId: number, surveyId: number, submissionId: number) => { + const { data } = await axios.post(`/api/project/${projectId}/survey/${surveyId}/observations/process`, { + observation_submission_id: submissionId + }); + + return data; + }; + return { - uploadObservationSubmission, - getObservationSubmission, - deleteObservationSubmission, - getObservationSubmissionSignedURL, - initiateXLSXSubmissionTransform, - getOccurrencesForView, - processOccurrences, - processDWCFile, - getSpatialMetadata, insertUpdateObservationRecords, - getObservationRecords + getObservationRecords, + uploadCsvForImport, + processCsvSubmission }; }; diff --git a/app/src/hooks/useBioHubApi.ts b/app/src/hooks/useBioHubApi.ts index d89a6db8e7..b9a80becf9 100644 --- a/app/src/hooks/useBioHubApi.ts +++ b/app/src/hooks/useBioHubApi.ts @@ -5,6 +5,7 @@ import useAdminApi from './api/useAdminApi'; import useAxios from './api/useAxios'; import useCodesApi from './api/useCodesApi'; import useDraftApi from './api/useDraftApi'; +import useDwcaApi from './api/useDwcaApi'; import useExternalApi from './api/useExternalApi'; import useFundingSourceApi from './api/useFundingSourceApi'; import useObservationApi from './api/useObservationApi'; @@ -48,6 +49,8 @@ export const useBiohubApi = () => { const observation = useObservationApi(apiAxios); + const dwca = useDwcaApi(apiAxios); + const resources = useResourcesApi(apiAxios); const external = useExternalApi(axios); @@ -68,6 +71,7 @@ export const useBiohubApi = () => { taxonomy, survey, observation, + dwca, resources, codes, draft, diff --git a/app/src/interfaces/useDwcaApi.interface.ts b/app/src/interfaces/useDwcaApi.interface.ts new file mode 100644 index 0000000000..029d89537e --- /dev/null +++ b/app/src/interfaces/useDwcaApi.interface.ts @@ -0,0 +1,87 @@ +import { Feature, FeatureCollection } from 'geojson'; + +export interface IGetSubmissionCSVForViewItem { + name: string; + headers: string[]; + rows: string[][]; +} + +export interface IGetSubmissionCSVForViewResponse { + data: IGetSubmissionCSVForViewItem[]; +} + +export type ObservationSubmissionMessageSeverityLabel = 'Notice' | 'Error' | 'Warning'; + +export interface IGetObservationSubmissionResponseMessages { + severityLabel: ObservationSubmissionMessageSeverityLabel; + messageTypeLabel: string; + messageStatus: string; + messages: { id: number; message: string }[]; +} + +/** + * Get observation submission response object. + * + * @export + * @interface IGetObservationSubmissionResponse + */ +export interface IGetObservationSubmissionResponse { + surveyObservationData: ISurveyObservationData; + surveyObservationSupplementaryData: ISurveySupplementaryData | null; +} + +export interface ISurveySupplementaryData { + occurrence_submission_publish_id: number; + occurrence_submission_id: number; + event_timestamp: string; + queue_id: number; + create_date: string; + create_user: number; + update_date: string | null; + update_user: number | null; + revision_count: number; +} + +export interface ISurveyObservationData { + occurrence_submission_id: number; + inputFileName: string; + status?: string; + isValidating: boolean; + messageTypes: IGetObservationSubmissionResponseMessages[]; +} + +export interface IGetObservationSubmissionErrorListResponse { + id: number; + type: string; + status: string; + message: string; +} + +export interface IUploadObservationSubmissionResponse { + submissionId: number; +} + +export interface IGetOccurrencesForViewResponseDetails { + geometry: Feature | null; + taxonId: string; + lifeStage: string; + vernacularName: string; + individualCount: number; + organismQuantity: number; + organismQuantityType: string; + occurrenceId: number; + eventDate: string; +} + +export type EmptyObject = Record; + +export interface ITaxaData { + associated_taxa?: string; + vernacular_name?: string; + submission_spatial_component_id: number; +} + +export interface ISpatialData { + taxa_data: ITaxaData[]; + spatial_data: FeatureCollection | EmptyObject; +} diff --git a/app/src/interfaces/useObservationApi.interface.ts b/app/src/interfaces/useObservationApi.interface.ts index 52a7fbe049..bb3eb7cf7f 100644 --- a/app/src/interfaces/useObservationApi.interface.ts +++ b/app/src/interfaces/useObservationApi.interface.ts @@ -1,92 +1,5 @@ -import { IObservationTableRow } from 'contexts/observationsContext'; -import { Feature, FeatureCollection } from 'geojson'; - -export interface IGetSubmissionCSVForViewItem { - name: string; - headers: string[]; - rows: string[][]; -} - -export interface IGetSubmissionCSVForViewResponse { - data: IGetSubmissionCSVForViewItem[]; -} - -export type ObservationSubmissionMessageSeverityLabel = 'Notice' | 'Error' | 'Warning'; - -export interface IGetObservationSubmissionResponseMessages { - severityLabel: ObservationSubmissionMessageSeverityLabel; - messageTypeLabel: string; - messageStatus: string; - messages: { id: number; message: string }[]; -} - -/** - * Get observation submission response object. - * - * @export - * @interface IGetObservationSubmissionResponse - */ -export interface IGetObservationSubmissionResponse { - surveyObservationData: ISurveyObservationData; - surveyObservationSupplementaryData: ISurveySupplementaryData | null; -} - -export interface ISurveySupplementaryData { - occurrence_submission_publish_id: number; - occurrence_submission_id: number; - event_timestamp: string; - queue_id: number; - create_date: string; - create_user: number; - update_date: string | null; - update_user: number | null; - revision_count: number; -} - -export interface ISurveyObservationData { - occurrence_submission_id: number; - inputFileName: string; - status?: string; - isValidating: boolean; - messageTypes: IGetObservationSubmissionResponseMessages[]; -} - -export interface IGetObservationSubmissionErrorListResponse { - id: number; - type: string; - status: string; - message: string; -} - -export interface IUploadObservationSubmissionResponse { - submissionId: number; -} - -export interface IGetOccurrencesForViewResponseDetails { - geometry: Feature | null; - taxonId: string; - lifeStage: string; - vernacularName: string; - individualCount: number; - organismQuantity: number; - organismQuantityType: string; - occurrenceId: number; - eventDate: string; -} - -export type EmptyObject = Record; - -export interface ITaxaData { - associated_taxa?: string; - vernacular_name?: string; - submission_spatial_component_id: number; -} - -export interface ISpatialData { - taxa_data: ITaxaData[]; - spatial_data: FeatureCollection | EmptyObject; -} +import { IObservationRecord } from 'contexts/observationsContext'; export interface IGetSurveyObservationsResponse { - surveyObservations: IObservationTableRow[]; + surveyObservations: IObservationRecord[]; } diff --git a/app/src/interfaces/usePublishApi.interface.ts b/app/src/interfaces/usePublishApi.interface.ts index f11da5c254..781549e3c2 100644 --- a/app/src/interfaces/usePublishApi.interface.ts +++ b/app/src/interfaces/usePublishApi.interface.ts @@ -1,4 +1,4 @@ -import { ISurveyObservationData } from './useObservationApi.interface'; +import { ISurveyObservationData } from './useDwcaApi.interface'; import { IGetProjectAttachment, IGetProjectReportAttachment } from './useProjectApi.interface'; import { ISurveySummaryData } from './useSummaryResultsApi.interface'; import { IGetSurveyAttachment, IGetSurveyReportAttachment } from './useSurveyApi.interface'; diff --git a/app/src/interfaces/useSurveyApi.interface.ts b/app/src/interfaces/useSurveyApi.interface.ts index 42184bd8b1..4996d4099d 100644 --- a/app/src/interfaces/useSurveyApi.interface.ts +++ b/app/src/interfaces/useSurveyApi.interface.ts @@ -109,6 +109,17 @@ export interface IGetSurveyLocation { revision_count: number; } +export interface IGetSurveyBlock { + survey_block_id: number; + name: string; + description: string; + create_date: string; + create_user: number; + update_date: string | null; + update_user: number | null; + revision_count: number; +} + export interface SurveyViewObject { survey_details: IGetSurveyForViewResponseDetails; species: IGetSpecies; @@ -120,6 +131,7 @@ export interface SurveyViewObject { participants: IGetSurveyParticipant[]; partnerships: IGetSurveyForViewResponsePartnerships; locations: IGetSurveyLocation[]; + blocks: IGetSurveyBlock[]; } export interface SurveyUpdateObject extends ISurveyLocationForm { @@ -315,7 +327,7 @@ export interface IGetSurveyAttachmentsResponse { export interface ISurveyPermits { permits: { - id: number; + permit_id: number; permit_number: string; permit_type: string; }[]; diff --git a/app/src/layouts/AltLayout.tsx b/app/src/layouts/AltLayout.tsx new file mode 100644 index 0000000000..39c48f0703 --- /dev/null +++ b/app/src/layouts/AltLayout.tsx @@ -0,0 +1,55 @@ +import Alert from '@mui/material/Alert'; +import Box from '@mui/material/Box'; +import CssBaseline from '@mui/material/CssBaseline'; +import Footer from 'components/layout/Footer'; +import Header from 'components/layout/Header'; +import { DialogContextProvider } from 'contexts/dialogContext'; +import { PropsWithChildren } from 'react'; + +const BaseLayout = (props: PropsWithChildren) => { + function isSupportedBrowser() { + if ( + navigator.userAgent.indexOf('Chrome') !== -1 || + navigator.userAgent.indexOf('Firefox') !== -1 || + navigator.userAgent.indexOf('Safari') !== -1 || + navigator.userAgent.indexOf('Edge') !== -1 + ) { + return true; + } + + return false; + } + + return ( + + + + {!isSupportedBrowser() && ( + + This is an unsupported browser. Some functionality may not work as expected. + + )} + +
+ + + {props.children} + + +