diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5b93019d..3e49dd6c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -68,10 +68,9 @@ jobs: echo "$(pwd)/micromamba/bin" >> $GITHUB_PATH ./bin/micromamba shell init -s bash echo $'channels:\n - conda-forge\n - bioconda\n - defaults\nuse_lockfiles: false' >> ~/.mambarc - - name: Install Singularity + - name: Install Singularity with defaults if: matrix.exec_profile == 'singularity' - - name: Singularity install with defaults - uses: singularityhub/install-singularity@main + uses: singularityhub/install-singularity@main - name: Run pipeline with test data in docker profile if: matrix.exec_profile == 'docker' # TODO nf-core: You can customise CI pipeline run tests as required