fix: properly use GENOME_RELEASE to fix MANE transcripts (#24)

varfish-org · Dec 27, 2023 · 79e1854 · 79e1854
1 parent d9cc244
commit 79e1854
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/pass-1.sh b/src/pass-1.sh
@@ -30,7 +30,7 @@ if [[ "$GENOME_RELEASE" == grch37 ]]; then
 fi
 
 mehari db create \
-    $(if [[ "$RELEASE" == grch37 ]]; then \
+    $(if [[ "$GENOME_RELEASE" == grch37 ]]; then \
         echo --path-mane-txs-tsv $DATA_DIR/tmp/mane-txs.tsv; \
     fi) \
     --path-out $DATA_DIR/pass-1/txs.bin.zst \

diff --git a/src/pass-2.sh b/src/pass-2.sh
@@ -11,7 +11,7 @@ set -x
 mkdir -p $DATA_DIR/pass-2
 
 mehari db create \
-    $(if [[ "$RELEASE" == grch37 ]]; then \
+    $(if [[ "$GENOME_RELEASE" == grch37 ]]; then \
         echo --path-mane-txs-tsv $DATA_DIR/tmp/mane-txs.tsv; \
     fi) \
     --path-out $DATA_DIR/pass-2/txs.bin.zst \