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feat: allow user to select transcript source on CLI (#247) #249

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holtgrewe
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@holtgrewe holtgrewe linked an issue Nov 9, 2023 that may be closed by this pull request
@holtgrewe holtgrewe force-pushed the 247-allow-user-to-select-only-to-report-refseqensembl-transcripts branch from 00163c1 to 38ce0e1 Compare November 9, 2023 11:01
@holtgrewe holtgrewe enabled auto-merge (squash) November 9, 2023 11:01
@holtgrewe holtgrewe added this to the v0.16 milestone Nov 9, 2023
@holtgrewe holtgrewe disabled auto-merge November 9, 2023 11:07
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codecov bot commented Nov 9, 2023

Codecov Report

Attention: 98 lines in your changes are missing coverage. Please review.

Comparison is base (97094fb) 73.76% compared to head (00163c1) 74.38%.
Report is 8 commits behind head on main.

❗ Current head 00163c1 differs from pull request most recent head 38ce0e1. Consider uploading reports for the commit 38ce0e1 to get more accurate results

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #249      +/-   ##
==========================================
+ Coverage   73.76%   74.38%   +0.62%     
==========================================
  Files          21       22       +1     
  Lines        4497     4708     +211     
==========================================
+ Hits         3317     3502     +185     
- Misses       1180     1206      +26     
Files Coverage Δ
src/annotate/strucvars/mod.rs 86.64% <100.00%> (ø)
src/annotate/strucvars/csq.rs 0.00% <0.00%> (ø)
src/annotate/seqvars/mod.rs 70.17% <83.33%> (+0.64%) ⬆️
src/main.rs 0.00% <0.00%> (ø)
src/server/actix_server/seqvars_csq.rs 0.00% <0.00%> (ø)
src/server/mod.rs 0.00% <0.00%> (ø)
src/annotate/seqvars/ann.rs 88.95% <66.66%> (-0.71%) ⬇️
src/annotate/seqvars/csq.rs 73.74% <95.31%> (+4.74%) ⬆️
src/db/dump/mod.rs 0.00% <0.00%> (ø)
src/verify/seqvars.rs 0.00% <0.00%> (ø)
... and 2 more

... and 2 files with indirect coverage changes

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@holtgrewe holtgrewe merged commit caab82e into main Nov 9, 2023
@holtgrewe holtgrewe deleted the 247-allow-user-to-select-only-to-report-refseqensembl-transcripts branch November 9, 2023 11:10
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Allow user to select only to report RefSeq/ENSEMBL transcripts
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