environment.yml

name: scChIPseq-1.3
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - bioconda::multiqc=1.11=pyhdfd78af_0
  - bioconda::bowtie2=2.4.2=py39hc9c6fcd_2
  - bioconda::star=2.7.8a=h9ee0642_1
  - bioconda::cutadapt=3.5=py39h38f01e4_0
  - bioconda::seqtk=1.3=h5bf99c6_3
  - bioconda::samtools=1.14=hb421002_0
  - conda-forge::more-itertools=8.10.0=pyhd8ed1ab_0
  - bioconda::bedtools=2.30.0=h7d7f7ad_2
  - bioconda::deeptools=3.5.1=py_0
  - conda-forge::gawk=5.1.0=h7f98852_0
  ## python
  - conda-forge::markdown
  - conda-forge::python=3.9.7=hb7a2778_3_cpython
  - conda-forge::pymdown-extensions=9.0=pyhd8ed1ab_0
  - bioconda::pysam=0.17.0=py39h051187c_0
  - bioconda::bx-python=0.8.11=py39h5d76eff_1
  - conda-forge::scipy=1.7.1=py39hee8e79c_0
  ## R
  - conda-forge::r-base=4.1.1=hb93adac_1
  - conda-forge::r-reshape2=1.4.4=r41h03ef668_1
  - conda-forge::r-plotrix=3.8_2=r41hc72bb7e_0
  - conda-forge::r-matrix=1.3_4=r41he454529_0
  - bioconda::bioconductor-dropletutils=1.12.1=r41h399db7b_0
  - conda-forge::r-dplyr=1.0.9=r41h7525677_0