Pathways_2021_main.md

layout	permalink	title	header1	header2	image	keywords	description	intructors	length
workshop_main_3day	/PNA_2021	Pathways	Workshop Pages for Students	Pathways and Network Analysis 2021	/site_images/CBW_pathway_icon.jpg	Gene lists, predict gene function, identify master regulators	Course covers the bioinformatics concepts and tools available for interpreting a gene list using pathway and network information.	Gary Bader, Veronique Voisin, Robin Haw, Micheal Hoffman,Ruth Isserlin	3 days

Welcome

Welcome to Pathways and Network Analysis 2021.

The course schedule can be found here.

Meet your faculty here

---

Pre-Workshop Materials and Laptop Setup Instructions

Laptop Setup Instructions

Instructions to setup your laptop can be found here.

Pre-workshop Tutorials

Pre-readings and pre-work can be found here here.
It is in your best interest to complete these before the workshop.

---

Class photo

---

Day 1

Welcome

Rachade/Francis

Module 1: Introduction to Pathway and Network Analysis

Gary Bader

Module 1

Module 2: Finding over-represented pathways

Veronique Voisin & Ruth Isserlin

Module 2

Module 2 Lab g:Profil

Module 2 Lab GSEA

Module 3: Network Visualization and Analysis with Cytoscape

Ruth Isserlin

Module 3

Module 3 Lab g:profiler

Module 3 Lab GSEA

Module 3 lab automation

Day 2

Module 4: In-depth Analysis of Networks and Pathways

Robin Haw

Module 4 Lecture & Lab

Module 5: Regulatory Network Analysis

Michael Hoffman & Veronique Voisin

Module 5

Module 5 Lab1

Module 5 Lab2

Day 3

Module 6: Gene Function Prediction

Veronique Voisin

Module 6

Module 6 Lab: Cytoscape

Module 6 Lab: Web

Review of the tools : Integrated workflow

Assignment

---

---