| layout | permalink | title | header1 | header2 | image | length |
|---|---|---|---|---|---|---|
workshop_main_2day |
/AMB_2024 |
AMB 2024 |
Workshop Pages for Students |
Advanced Microbiome Analysis 2024 |
/site_images/AMB_2024_v1.png |
2 days |
Welcome to Advanced Microbiome Analysis 2024.
The course schedule can be found here
Meet your faculty here
Pre-work including programs to install, tutorials, and readings can be found here.
Connecting and properly using a cloud computing cluster at the CBW here.
Advanced Microbiome Class of 2024
Morgan Langille
Module 1 Lecture Recording
Module 1 Lecture Slides
Module 1 Lab
Module 1 Lab Markdown
Robyn Wright
Module 2 Lecture Recording
Module 2 Lecture Slides
Module 2 Lab
Module 2 Lab Markdown
Morgan Langille
Module 3 Lecture Recording
Module 3 Lecture Slides
Module 3 Lab
Module 3 Lab Markdown
Monica Alvaro Fuss and Morgan Langille
Module 4 Lecture Recording
Module 4 Lecture Slides
Module 4 Lab
Module 4 Lab Markdown
Note that some of these files are quite large. If you have issues downloading them, try copying the link address, opening a new blank tab, and entering the URL into the new tab's address bar. If that fails, contact us at [email protected].
- amb_module1
- amb_module4
- cat_reads
- Functional_Helper_Scripts
- kneaddata_cat_reads
- kneaddata_out
- kraken2_outraw_RefSeqCompleteV205
- mapped_matched_fastq
- MMSeqs2_db
- mmseqs_U90_out
- raw_data
- scripts
We have made our AWS AMI (Amazon Machine Image) publicly available. To launch your own instance, follow the instructions provided by Amazon on how to launch an EC2 instance from a custom Amazon Machine Image. Please note that you will need an AWS account to proceed, and that you will need to upload the CourseData files yourself.
Here are the details of the AMI:
- AWS Region: us-east-1 (N. Virgina)
- AMI type: public image
- AMI name: CBW_MIC_240503
- AMI ID: ami-0390e50a00366e923
If you want to create and activate a new AWS account, please follow the instructions provided by Amazon.