From 8dd7bd1c16ef04c68239750bc3a2379c6467c047 Mon Sep 17 00:00:00 2001 From: boshek Date: Tue, 24 Mar 2020 22:41:01 -0700 Subject: [PATCH] update pkgdown --- docs/404.html | 2 +- docs/CODE_OF_CONDUCT.html | 2 +- docs/authors.html | 2 +- docs/index.html | 24 ++-- docs/news/index.html | 2 +- docs/pkgdown.yml | 2 +- docs/reference/download_aao.html | 21 ++-- docs/reference/download_ao.html | 3 +- docs/reference/download_enso.html | 2 +- docs/reference/download_mei.html | 2 +- docs/reference/download_nao.html | 2 +- docs/reference/download_npgo.html | 2 +- docs/reference/download_oni.html | 2 +- docs/reference/download_pdo.html | 203 ++++++++++++++++++++++++++++++ docs/reference/download_soi.html | 2 +- docs/reference/figures/plot-1.png | Bin 5436 -> 4881 bytes docs/reference/index.html | 10 +- docs/reference/rsoi-package.html | 3 +- 18 files changed, 251 insertions(+), 35 deletions(-) create mode 100644 docs/reference/download_pdo.html diff --git a/docs/404.html b/docs/404.html index c6e644b..e670d30 100644 --- a/docs/404.html +++ b/docs/404.html @@ -67,7 +67,7 @@ rsoi - 0.5.1 + 0.5.2 diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html index 0d4443e..4640eff 100644 --- a/docs/CODE_OF_CONDUCT.html +++ b/docs/CODE_OF_CONDUCT.html @@ -67,7 +67,7 @@ rsoi - 0.5.1 + 0.5.2 diff --git a/docs/authors.html b/docs/authors.html index 97b3877..9c03f4f 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -67,7 +67,7 @@ rsoi - 0.5.1 + 0.5.2 diff --git a/docs/index.html b/docs/index.html index 32c068d..6d2666e 100644 --- a/docs/index.html +++ b/docs/index.html @@ -35,7 +35,7 @@ rsoi - 0.5.1 + 0.5.2 @@ -88,6 +88,7 @@
  • Arctic Oscillation
  • Antarctic Oscillation
  • Multivariate ENSO Index Version 2
    • +
  • Pacific Decadal Oscillation

    • @@ -105,14 +106,14 @@

    +#> Year Month Date dSST3.4 ONI ONI_month_window phase +#> <int> <ord> <date> <dbl> <dbl> <chr> <fct> +#> 1 1950 Jan 1950-01-01 -1.62 NA <NA> <NA> +#> 2 1950 Feb 1950-02-01 -1.32 -1.34 JFM Cool Phase/La Nina +#> 3 1950 Mar 1950-03-01 -1.07 -1.17 FMA Cool Phase/La Nina +#> 4 1950 Apr 1950-04-01 -1.11 -1.18 MAM Cool Phase/La Nina +#> 5 1950 May 1950-05-01 -1.37 -1.07 AMJ Cool Phase/La Nina +#> 6 1950 Jun 1950-06-01 -0.74 -0.85 MJJ Cool Phase/La Nina

    And a quick plot to illustrate the data:

    barcols <- c('#edf8b1','#7fcdbb','#2c7fb8')
 
@@ -124,7 +125,7 @@ 
    
 
    
 
    
 Inspired by
    
-
    The idea for this package borrows heavily from the rpdo package. The initial efforts by these authors are gratefully acknowledged. The rpdo github page can be found here: rpdo
    
+
    The idea for this package borrows heavily from the rpdo package. rsoi now supercedes rpdo as a source of data in R for Pacific Decadal Oscillation.
    
 
    
 
    
 
    
@@ -144,6 +145,8 @@ 
    
 
 
  • Multivariate ENSO Index Version 2 (MEI.v2): https://www.esrl.noaa.gov/psd/enso/mei/
 
    • 
+
  • Pacific Decadal Oscillation: https://oceanview.pfeg.noaa.gov/erddap/tabledap/cciea_OC_PDO.html
+
    • 
 
 
    
 
    
@@ -194,6 +197,7 @@ 
    Dev status
    
 
  • License: GPL v3
    • 
 
  • Travis-CI Build Status
    • 
 
  • AppVeyor Build Status
    • 
+
  • R build status
    •
    diff --git a/docs/news/index.html b/docs/news/index.html index 08f0815..e5c5e0c 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -67,7 +67,7 @@ rsoi - 0.5.1 + 0.5.2 diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index f0f8cf0..85d6e69 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,4 +1,4 @@ -pandoc: 2.7.2 +pandoc: '2.6' pkgdown: 1.4.1 pkgdown_sha: ~ articles: [] diff --git a/docs/reference/download_aao.html b/docs/reference/download_aao.html index 0811a8c..f62c30c 100644 --- a/docs/reference/download_aao.html +++ b/docs/reference/download_aao.html @@ -6,7 +6,7 @@ -Download Arctic Oscillation data — download_aao • rsoi +Download Antarctic Oscillation data — download_aao • rsoi @@ -35,9 +35,9 @@ - - + + @@ -70,7 +70,7 @@ rsoi - 0.5.1 + 0.5.2 @@ -109,14 +109,14 @@
    -

    Download Arctic Oscillation data

    +

    Download Antarctic Oscillation data

    Source: R/download-aao.R
    -

    Projection of the daily 1000 hPa anomaly height field north of 20°N on the first EOF obtained -from the monthly 1000 hPa height anomaly.

    +

    Projection of the monthly 700 hPa anomaly height field south of 20°S on the first EOF obtained +from the monthly 700 hPa height anomaly.

    download_aao(use_cache = FALSE, file = NULL)
    @@ -140,14 +140,15 @@

    Value

      +

    • Date: Date object that uses the first of the month as a placeholder. Date formatted as date on the first of the month because R only supports one partial of date time

    • Month: Month of record

    • Year: Year of record

      • -

    • aao: Antarctic Oscillation

      • +

    • AAO: Antarctic Oscillation

    References

    -

    https://www.cpc.ncep.noaa.gov/products/precip/CWlink/daily_ao_index/aao/aao_index.html

    +

    https://www.cpc.ncep.noaa.gov/products/precip/CWlink/daily_ao_index/aao/aao.shtml

    Examples

    if (FALSE) {
diff --git a/docs/reference/download_ao.html b/docs/reference/download_ao.html
index f14d449..0cb586b 100644
--- a/docs/reference/download_ao.html
+++ b/docs/reference/download_ao.html
@@ -70,7 +70,7 @@
       
       
         rsoi
-        0.5.1
+        0.5.2
       
     
    
 
@@ -140,6 +140,7 @@ 
    Value
    
 
     
 
      
+
    • Date: Date object that uses the first of the month as a placeholder. Date formatted as date on the first of the month because R only supports one partial of date time
      • 
 
    • Month: Month of record
      • 
 
    • Year: Year of record
      • 
 
    • AO: Arctic Oscillation
      • 
diff --git a/docs/reference/download_enso.html b/docs/reference/download_enso.html
index 16fe99a..feec3e8 100644
--- a/docs/reference/download_enso.html
+++ b/docs/reference/download_enso.html
@@ -74,7 +74,7 @@
       
       
         rsoi
-        0.5.1
+        0.5.2
    diff --git a/docs/reference/download_mei.html b/docs/reference/download_mei.html index f114ae5..3f19b22 100644 --- a/docs/reference/download_mei.html +++ b/docs/reference/download_mei.html @@ -74,7 +74,7 @@ rsoi - 0.5.1 + 0.5.2
    diff --git a/docs/reference/download_nao.html b/docs/reference/download_nao.html index 4007cab..bfa355d 100644 --- a/docs/reference/download_nao.html +++ b/docs/reference/download_nao.html @@ -69,7 +69,7 @@ rsoi - 0.5.1 + 0.5.2 diff --git a/docs/reference/download_npgo.html b/docs/reference/download_npgo.html index eb7c31d..2064ef6 100644 --- a/docs/reference/download_npgo.html +++ b/docs/reference/download_npgo.html @@ -69,7 +69,7 @@ rsoi - 0.5.1 + 0.5.2 diff --git a/docs/reference/download_oni.html b/docs/reference/download_oni.html index 1eefa36..f77bfc2 100644 --- a/docs/reference/download_oni.html +++ b/docs/reference/download_oni.html @@ -74,7 +74,7 @@ rsoi - 0.5.1 + 0.5.2 diff --git a/docs/reference/download_pdo.html b/docs/reference/download_pdo.html new file mode 100644 index 0000000..5b51b4a --- /dev/null +++ b/docs/reference/download_pdo.html @@ -0,0 +1,203 @@ + + + + + + + + +Download Pacific Decadal Oscillation Data — download_pdo • rsoi + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +
    + + + + +
    + +
    +
    +
    +

    Download Pacific Decadal Oscillation Data

    + Source: R/download-pdo.R + +
    + +
    +

    The PDO index is derived as the leading principal of monthly SST anomalies in the North Pacific Ocean, +poleward of 20N. The monthly mean global average SST anomalies are removed to separate this +pattern of variability from any "global warming" signal that may be present in the data.

    +

    The NCEI PDO index is based on NOAA's extended reconstruction of SSTs (ERSST Version 4). +It is constructed by regressing the ERSST anomalies against the Mantua PDO index for their +overlap period, to compute a PDO regression map for the North Pacific ERSST anomalies. +The ERSST anomalies are then projected onto that map to compute the NCEI index. +The NCEI PDO index closely follows the Mantua PDO index.

    +
    + + 
    download_pdo(use_cache = FALSE, file = NULL)
    + +

    Arguments

    + + + + + + + + + + +
    use_cache

    logical option to save and load from cache. If `TRUE`, results will be cached in memory +if `file` is `NULL` or on disk if `file` is not `NULL`.

    file

    optional character with the full path of a file to save the data. If `cache` is `FALSE` but +`file` is not `NULL`, the results will be downloaded from the internet and saved on disk.

    + +

    Value

    + + +
      +

    • Date: Date object that uses the first of the month as a placeholder. Date formatted as date on the first of the month because R only supports one partial of date time

      • +

    • Month: Month of record

      • +

    • Year: Year of record

      • +

    • PDO: Pacific Decadal Oscillation index

      • +

    • PDO_e: Extended PDO (NCEI PDO index)

      • +
    + +

    References

    + +

    Original PDO: https://oceanview.pfeg.noaa.gov/erddap/info/cciea_OC_PDO/index.html +Extended PDO: https://www.ncdc.noaa.gov/teleconnections/pdo/

    + +

    Examples

    + 
    if (FALSE) {
+pdo <- download_pdo()
+}
    +
    + +
    + + +
    +
    +

    Developed by Sam Albers.

    +
    + +
    +

    Site built with pkgdown 1.4.1.

    +
    + +
    +
    + + + + + + + + diff --git a/docs/reference/download_soi.html b/docs/reference/download_soi.html index e1fd9ed..af8fb7e 100644 --- a/docs/reference/download_soi.html +++ b/docs/reference/download_soi.html @@ -69,7 +69,7 @@ rsoi - 0.5.1 + 0.5.2 diff --git a/docs/reference/figures/plot-1.png b/docs/reference/figures/plot-1.png index 6ba8fe9b0e0fc0f056bfd499e5385d24f605241a..3f27bb4bb8ffd9207c2d1c3df04f6a5031374f54 100644 GIT binary patch literal 4881 zcmds5c~lcwv%j6r!WN>apn<^WDBy~YBp``EJ0l}5Kt_>KRuz>H1X%)%L`Vm>Z$^RR z29E&JGmaQVV4OjLMBsCopfW(KktnNzn#d{&0Ru^1ocGRo@4V%Ych39k`=jqY_g8hR zZdKQAD+5l zG#b4I{R&Nxd7}TW6acL6eSV;(L(+W!*hn{RSRed-@o;xeT2U?in>}HV^-(EB&lMWG zP5yl(ZRB9F%X}YVmP>za{M$W091}X!gP+5J^E_fl-G&qlb-)>vrO&(6S!Rezj@-}34>eU9&mZz*GWsRLzp@cXy#z&t^P-Md4`<) zhYjeczq*%+T8G1koPuA3s)b;90V4OjV1-=uK($s_H_U4@F%|Ap^l^8>NI^#T{?G6h z5FbfET$RIaaCHpO6LGCG5PSvVqq42>rvAr*E^`8J+GZbW7}0-WfsY;iv6X};sy7ZN zT`|Lkx6Fcd)8)dh=&LH(TZ(C`6w({l_pP0ct@N}qk-3n}W|?*MtK11$^Y({;d6R=Y zO#vM@T7L!>cmpJ8`*O@{P74@+o>Tz|B0;FEh6f{py2h8K>pU!mxK3RHUpUiL8}-{e4|p;fywP=2^C3Z6BKP?A6 z5T`r&5&i7olvk}6sWsPoBgj0Jqv7QA-=Vo!X4t8Wb!Uy@%KRi@xhxS)3!KfPM1guM zyuaYRYJWqvPe~9M7z*)-e{Ca~lSR$gi`ieYK=W6=4ME;CoTBhv)Qu2=6T+WefSEO6 zk5`M5$8zUH9d$8s-mmOW3rT2XKNmrkV@lg20IQ?DA& z1%GUHLAC^@F2dXuIgoAzQR1K)^H95bL!ov^c~Ho&wrJYm%7Gi#?$rwB9Xc3E=V`-% z-ea0}%E5}s8nr_11xymyYTBuAM~z}J8bZc%zUFuCocy>eagT|Q!TZC0BS@`jzc?uG zYPJsiWj?c&YI;nWuBEP0XWPD~}bHCrk1o5{_L%Jlj&| z;%ZQRU@9 zk}-PkQkL#X)%q=^4;$M&0>jL!b%l}bNg-HIcal?}!+EFa8dW%UuJP0=iY)W;$YS&a zr><1~*U|Kyacl6gevsjewRJrM%;%lH?Y$JNSv_*^v+GtO6DWBa2wZS;(e6(>v3E(X zfX>-BA72yUhfID^GCkR+GF|N%x6z>DmJ7|1!*j!%2cF*l^3#o5b2WiK6@Y<&%^>qo zPD%A_Uh*uY;3+{FIbRBCx=L3NxM+ySr0b~-sN~O!F@T@VxG9zpurfMtYK4~4;Y`8~ z*m6J0bv;OnZfp(qLzrghb!)m);Pr)^)Kpz3%u+!zO*xs)+D=g3M=Nvv;TCxf&=28u zQscaR`kh*0RaAR3iAUEYcLX9%va0o?MCC82L=F${@Zz3pl&2H)Bx%UB^K*pv7= zhy{!3lOOjW1<|eMg3MQd>L@@ZlZMi!48YP>BkCD}{3@cq!$BKzKZQLg6iep7EeD@_ zwq9lMT1)|s%*orYicg?1lT>8{#`JeS2}EYYOENYpXW8)jI1YZ8JnD=s#Olq1beSvQ z@zjym&X?Qu-fvuVq}beoM;qfnDe=n3aMyP%>%nERkNjsRtOcTvQVCfSdU{j0u}`@4DdlAV8vo1^@V22 zS`I;J4Y3UyQMlS%x&RVn{!RuF7YBp{RyyDhsjY;lgp83fI})D^QH?D_TRCKDAvJh_ zr5Wghu`(OYbb%G#_TsE%6clk$d>C1@icu1q4uyVj`u4d_uiJ~2Icf%X>~h82@@%oU z7D&rgG-RlReQ-5C`gDG7iN*NG@N$?nNs#HU6j_QZOaDGq33d?q#X*5YrZHwB%Mg=g ztT~u;L_c--NTg7IBh6>>hGg=NA+WJ=W@?cthV|+j^(!;ym}cX0E5nUXqDLx4+q~l^ zE8IMj@3bpCDisw8F^QDMD_g1VRirFmgG05if8%hp0*V$AXP{DLi3txSS6Rh$uh933&*uxT2# zvC@*6eT^(7@zT1k?Lmw_IG~%&g6V}lWThjyy7?5Igy=8j)7D`lyA*(0m1u_V+<{!W z|J}wtz ziqyVCzj0e=p(F@I7ksmB9O&A{!WHMPh&$fDc1Jr(`_cT*ooq?v1hf&oaT5ky^v|cdw92tru&7$)V+}|@y4$DdAXJs zhmxxg2Jc(>N)ZNbF2LI5zh{cG93Pc1pYtI88`L_JYJn@0HP*$A9u! 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    download_aao()

    -

    Download Arctic Oscillation data

    +

    Download Antarctic Oscillation data

    @@ -168,6 +168,12 @@

    download_pdo()

    + +

    Download Pacific Decadal Oscillation Data

    + +

    download_soi()

    diff --git a/docs/reference/rsoi-package.html b/docs/reference/rsoi-package.html index 1e96a08..1ad1ad5 100644 --- a/docs/reference/rsoi-package.html +++ b/docs/reference/rsoi-package.html @@ -71,7 +71,7 @@ rsoi - 0.5.1 + 0.5.2 @@ -127,6 +127,7 @@

    See a

    Useful links: