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This is a large rewrite from previous version so that data is embedded in the html page so users can create HTML and share with colleagues who don't have access to the original alignments or variants.

Please used the binary below.

Since this is the first release after a major change, the binary below is compiled in debug mode so it will be a bit slower but will give useful error messages (please report) should something happen.

custom js and show help with no args

v0.0.8

• show help when run with no args (#7)
• allow injection of custom javascript to affect options and option.tracks (#4)

always check latest release
see full description of jigv in the readme

grab the binary below to get started

better defaults, aesthetics

v0.0.7

• css from @brwnj
• better positioning of variant within window when using ->, <- arrow keys for SVs
• more concise popover for alignment track click
• given a VCF and no --region specified, the viewer will open at the first variant
• alignment track-height is larger when fewer tracks.

always check latest release
see full description of jigv in the readme

grab the binary below to get started

more fixes for custom reference and hosted cram

v0.0.6

more fixes for custom reference + cram

styling, custom CSS, sizing for trio

v0.0.5

• styling and left/right buttons by Joe Brown
• better aesthetics (sized to fit a trio of bams +variant track in a laptop screen)
• update readme to include directions on how to generate screenshots
• fix for custom reference + cram
• bump igv.js version to 2.4.1

always check latest release
see full description of jigv in the readme

navigation with keyboard arrows

v0.0.4

• navigation along VCF variants with left/right arrows.

better aesthetics for BAM/CRAM

v0.0.3

• color alignments by strand and set height to 10 by default
• guess type by file extension for remote files
• release binary is also a debug build as there is no performance-critical stuff an we will get better error messages in case of user problems.

support for names and remote files

v0.0.2

bump version

initial release

see README.
static linux binary is below. just wget, chmod +x and run ./jigv -h