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Based on this forum post, when the argument --tree-score-threshold-to-no-call is used in ReblockGVCFs with input that doesn't contain the TREE_SCORE annotation, the tool gets very slow, since it tries to no-call every variant. An error message should be thrown before starting traversal of the VCF if the input is missing this annotation when that argument is set.
The text was updated successfully, but these errors were encountered:
Based on this forum post, when the argument
--tree-score-threshold-to-no-call
is used inReblockGVCFs
with input that doesn't contain theTREE_SCORE
annotation, the tool gets very slow, since it tries to no-call every variant. An error message should be thrown before starting traversal of the VCF if the input is missing this annotation when that argument is set.The text was updated successfully, but these errors were encountered: