diff --git a/src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java b/src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java
index 3e0c8586f47..aa83957a8fb 100644
--- a/src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java
+++ b/src/main/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImport.java
@@ -86,6 +86,7 @@
* -V data/gvcfs/father.g.vcf.gz \
* -V data/gvcfs/son.g.vcf.gz \
* --genomicsdb-workspace-path my_database \
+ * --tmp-dir=/path/to/large/tmp \
* -L 20
*
*
@@ -98,6 +99,7 @@
* --batch-size 50 \
* -L chr1:1000-10000 \
* --sample-name-map cohort.sample_map \
+ * --tmp-dir=/path/to/large/tmp \
* --reader-threads 5
*
*
@@ -117,6 +119,7 @@
*
At least one interval must be provided
* Input GVCFs cannot contain multiple entries for a single genomic position
* The --genomicsdb-workspace-path must point to a non-existent or empty directory.
+ * GenomicsDBImport uses temporary disk storage during import. The amount of temporary disk storage required can exceed the space available, especially when specifying a large number of intervals. The command line argument `--tmp-dir` can be used to specify an alternate temporary storage location with sufficient space..
*
*
* Developer Note
diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs.java
index bf57138d2a0..d26b555586e 100644
--- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs.java
+++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/GenotypeGVCFs.java
@@ -61,7 +61,8 @@
* gatk --java-options "-Xmx4g" GenotypeGVCFs \
* -R Homo_sapiens_assembly38.fasta \
* -V gendb://my_database \
- * -O output.vcf.gz
+ * -O output.vcf.gz \
+ * --tmp-dir=/path/to/large/tmp
*
*
* Caveats
@@ -70,6 +71,7 @@
* programs produce files that they call GVCFs but those lack some important information (accurate genotype likelihoods
* for every position) that GenotypeGVCFs requires for its operation.
* Cannot take multiple GVCF files in one command.
+ * The amount of temporary disk storage required by GenomicsDBImport may exceed what is available in the default location: `/tmp`. The command line argument `--tmp-dir` can be used to specify an alternate temperary storage location with sufficient space.
*
*
* Special note on ploidy