From 899a9617058d4a227bb51e114cd748748564d38d Mon Sep 17 00:00:00 2001 From: Xiang Li Date: Thu, 31 Oct 2024 12:38:36 -0400 Subject: [PATCH 1/2] Add news about Mutation Assessor v4 --- docs/News.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/docs/News.md b/docs/News.md index 89676d9e70c..93a50139beb 100644 --- a/docs/News.md +++ b/docs/News.md @@ -2,6 +2,10 @@ * **New integration**: Structural Variants (SV)s of the [PCAWG dataset](https://www.cbioportal.org/study/summary?id=pancan_pcawg_2020) can now be viewed in Chromoscope on the _Patient View_ (Funding by [the Fund for Innovation in Cancer Informatics (ICI)](https://www.the-ici-fund.org/recipients/details/chromoscope-interactive-visualization-for-clinical-interpretation-of-whole-cancer-genomes)). [Example: SVs in breast cancer case DO2706 with BRCA1 mutation and HRD signature](https://www.cbioportal.org/patient/openResource_CHROMOSCOPE?studyId=pancan_pcawg_2020&caseId=DO2706) ![chromoscope image](https://github.com/user-attachments/assets/9ddc68ff-840b-4470-8f26-824f1faf959f) +## October 8, 2024 +* **Enhancement**: Mutation Assessor V4 data is available in the portal. +See new V4 Mutation Assessor data on _Results View_ page _Mutations_ tab ([Example: BRAF in MSK-IMPACT Clinical Sequencing Cohort](https://www.cbioportal.org/results/mutations?cancer_study_list=msk_impact_2017&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna&case_set_id=msk_impact_2017_cnaseq&gene_list=BRAF&geneset_list=%20&tab_index=tab_visualize&Action=Submit), click `Columns` button to add `Functional Impact` column), and [mutation mapper tool](https://www.cbioportal.org/mutation_mapper). +![image](https://github.com/user-attachments/assets/43037c36-0cbd-4425-af97-d8519767573f) ## September 27, 2024 * **Added data** consisting of 2,409 samples from 10 studies: From e7eab5395f2ab0f9608c467e156276638a6912c7 Mon Sep 17 00:00:00 2001 From: Ino de Bruijn Date: Thu, 31 Oct 2024 17:35:20 -0400 Subject: [PATCH 2/2] Tweak text and figure for mutation assessor --- docs/News.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/docs/News.md b/docs/News.md index 93a50139beb..854eaa3f804 100644 --- a/docs/News.md +++ b/docs/News.md @@ -4,8 +4,9 @@ ## October 8, 2024 * **Enhancement**: Mutation Assessor V4 data is available in the portal. -See new V4 Mutation Assessor data on _Results View_ page _Mutations_ tab ([Example: BRAF in MSK-IMPACT Clinical Sequencing Cohort](https://www.cbioportal.org/results/mutations?cancer_study_list=msk_impact_2017&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna&case_set_id=msk_impact_2017_cnaseq&gene_list=BRAF&geneset_list=%20&tab_index=tab_visualize&Action=Submit), click `Columns` button to add `Functional Impact` column), and [mutation mapper tool](https://www.cbioportal.org/mutation_mapper). -![image](https://github.com/user-attachments/assets/43037c36-0cbd-4425-af97-d8519767573f) +View the new V4 Mutation Assessor data in the [Mutation Table](https://bit.ly/48yOi7A) and the [Mutation Mapper Tool](https://www.cbioportal.org/mutation_mapper). + ![image](https://github.com/user-attachments/assets/ff53ee41-59d3-4c69-a494-3a7ca9a7c2d0) + ## September 27, 2024 * **Added data** consisting of 2,409 samples from 10 studies: