From 2fde4f253a564585e6be906dff884256b792ee8a Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Sun, 25 Aug 2024 15:32:12 +0000 Subject: [PATCH] chore: release --- Cargo.toml | 8 ++++---- crates/deepbiop-bam/CHANGELOG.md | 14 ++++++++++++++ crates/deepbiop-cli/CHANGELOG.md | 19 +++++++++++++++++++ crates/deepbiop-fq/CHANGELOG.md | 10 ++++++++++ crates/deepbiop-utils/CHANGELOG.md | 9 +++++++++ crates/deepbiop/CHANGELOG.md | 9 +++++++++ 6 files changed, 65 insertions(+), 4 deletions(-) diff --git a/Cargo.toml b/Cargo.toml index c86f302..af04879 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -4,7 +4,7 @@ members = ["crates/*", "py-deepbiop"] default-members = ["crates/*"] [workspace.package] -version = "0.1.10" +version = "0.1.11" edition = "2021" authors = ["Yangyang Li "] homepage = "https://github.com/cauliyang/DeepBioP" @@ -61,9 +61,9 @@ flate2 = { version = "1.0.30", features = [ "zlib-ng", ], default-features = false } -deepbiop-fq = { version = "0.1.10", path = "crates/deepbiop-fq" } -deepbiop-bam = { version = "0.1.10", path = "crates/deepbiop-bam" } -deepbiop-utils = { version = "0.1.10", path = "crates/deepbiop-utils" } +deepbiop-fq = { version = "0.1.11", path = "crates/deepbiop-fq" } +deepbiop-bam = { version = "0.1.11", path = "crates/deepbiop-bam" } +deepbiop-utils = { version = "0.1.11", path = "crates/deepbiop-utils" } [profile.opt-dev] inherits = "dev" diff --git a/crates/deepbiop-bam/CHANGELOG.md b/crates/deepbiop-bam/CHANGELOG.md index 9d6e816..5f5c97f 100644 --- a/crates/deepbiop-bam/CHANGELOG.md +++ b/crates/deepbiop-bam/CHANGELOG.md @@ -6,6 +6,20 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] +## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-bam-v0.1.10...deepbiop-bam-v0.1.11) - 2024-08-25 + +### Added +- Update keywords in Cargo.toml files +- *(io)* Refactor bam2fq function to handle equal seq and qual lengths +- Add BAM to fastq conversion functionality +- Add CLI installation guide + +### Other +- Remove unnecessary empty line +- Improve function and field comments +- Improve code readability and performance +- Merge branch 'dev' + ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-bam-v0.1.9...deepbiop-bam-v0.1.10) - 2024-08-20 ### Added diff --git a/crates/deepbiop-cli/CHANGELOG.md b/crates/deepbiop-cli/CHANGELOG.md index bb12e6f..1d32dd7 100644 --- a/crates/deepbiop-cli/CHANGELOG.md +++ b/crates/deepbiop-cli/CHANGELOG.md @@ -6,6 +6,25 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] +## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-cli-v0.1.10...deepbiop-cli-v0.1.11) - 2024-08-25 + +### Added +- Add FaToFq command for fastq to fasta conversion +- Update keywords in Cargo.toml files +- *(io)* Refactor bam2fq function to handle equal seq and qual lengths +- Add support for writing compressed fastq files +- Add fastq to fasta conversion command +- Add new file fq2fa.rs +- Add BAM to fastq conversion functionality +- Add CLI installation guide + +### Other +- Improve file variable names in FqToFa struct +- Remove unnecessary empty line +- Improve function and field comments +- Refactor file_path assignment in bam2fq.rs +- Merge branch 'dev' + ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-cli-v0.1.9...deepbiop-cli-v0.1.10) - 2024-08-20 ### Added diff --git a/crates/deepbiop-fq/CHANGELOG.md b/crates/deepbiop-fq/CHANGELOG.md index 2a9c65f..68ae436 100644 --- a/crates/deepbiop-fq/CHANGELOG.md +++ b/crates/deepbiop-fq/CHANGELOG.md @@ -5,6 +5,16 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-fq-v0.1.10...deepbiop-fq-v0.1.11) - 2024-08-25 + +### Added +- Update keywords in Cargo.toml files +- Add Python bindings for TensorEncoder +- Add CLI installation guide + +### Other +- Merge branch 'dev' + ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-fq-v0.1.9...deepbiop-fq-v0.1.10) - 2024-08-20 ### Added diff --git a/crates/deepbiop-utils/CHANGELOG.md b/crates/deepbiop-utils/CHANGELOG.md index a44817d..05d563f 100644 --- a/crates/deepbiop-utils/CHANGELOG.md +++ b/crates/deepbiop-utils/CHANGELOG.md @@ -6,6 +6,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] +## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-utils-v0.1.10...deepbiop-utils-v0.1.11) - 2024-08-25 + +### Added +- Update keywords in Cargo.toml files +- Add CLI installation guide + +### Other +- Merge branch 'dev' + ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-utils-v0.1.9...deepbiop-utils-v0.1.10) - 2024-08-20 ### Added diff --git a/crates/deepbiop/CHANGELOG.md b/crates/deepbiop/CHANGELOG.md index 54465e1..b776f24 100644 --- a/crates/deepbiop/CHANGELOG.md +++ b/crates/deepbiop/CHANGELOG.md @@ -5,6 +5,15 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-v0.1.10...deepbiop-v0.1.11) - 2024-08-25 + +### Added +- Update keywords in Cargo.toml files +- Add CLI installation guide + +### Other +- Merge branch 'dev' + ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-v0.1.9...deepbiop-v0.1.10) - 2024-08-20 ### Added