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CERR (pronounced 'sir'), stands for Computational Environment for Radiological Research. CERR is MATLAB based software platform for developing and sharing research results using radiation therapy treatment planning and imaging informatics. CERR has a wide variety of dose, imaging, and structure analysis and comparison tools. CERR is open-source and GNU GPL copyrighted.

Installing

• Source Code (requires Matlab license)
• Compiled Version (Does not require Matlab license)

Sample Datasets

• H&N, Prostate, Lung, Orart

Community/Support

• CERR Google group

Tutorials

• Data import
  • Importing DICOM
  • Importing Mha
  • Importing NIfTI data
  • Vendor Specific data
• Coordinate system
• Data Structure (the planC object)
• Directory Structure for the source code
• Viewer
• Command Line Tools
• Editing Dose distributions
• Editing Scans
• Contouring tools
• Editing Structures
• Dose Volume Histograms
• Metrics
• Merging Plans
• Image Fusion
• Radiomics
• Texture Calculation
• IMRTP: Intensity Modulated Radiation Therapy Planning
• Batch Scripts for Import and DVH extraction for various outcomes analysis projects
• GUI-based metrics extraction and cohort visualization
• ROE: Radiotherapy Outcomes Explorer
• Model Implementation Library
  • Dosimetric models
  • Radiomics models
  • Auto-Segmentation models
• Building Deep Learning Segmentation Models
• Unit Testing
• Code-modification log
• Miscellaneous