Using SimpleITK filters

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aditiiyer edited this page May 25, 2022 · 9 revisions

CERR provides a wrapper to extend access to image filters in the SimpleITK package.

Requirements

CERR
Python
Compatible SimpleITK package

Usage

Specify path to Python installation prior to launching Matlab

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:path/to/python

Specify path to SimpleITK via CERROptions.json

"sitkLibPath": "path/to/python/Lib/site-packages/"

Define JSON configurations for texture calculation. Supported filters include: GradientImageFilter, HistogramMatchingImageFilter, LaplacianRecursiveGaussianImageFilter, N4BiasFieldCorrectionImageFilter, and N4BiasAndHistogramCorrectionImageFilter.

global planC
strNum = 1;
configFilePath = '/path/to/config.json';
planC = generateTextureMapFromPlanC(planC,strNum,configFilePath );