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Allow user to select multiple data sets for batch execution through UI #381

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ArtPoon opened this issue Jul 6, 2015 · 3 comments
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ArtPoon commented Jul 6, 2015

For example, executing the mixed HCV pipeline on a MiSeq run's worth of paired FASTQ files.

@ArtPoon ArtPoon added this to the 0.6 Batching milestone Jul 6, 2015
@donkirkby donkirkby added the ready label Jul 9, 2015
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ArtPoon commented Aug 17, 2015

James proposes implementation of a new widget with tabular display where rows correspond to pipeline inputs and columns correspond to run ordering, or vice versa. Any complicated batch configuration should be done with the restful API. If there are N runs, each input must either have N entries or 1 entry that is replicated across runs.

@ArtPoon ArtPoon changed the title Batch execution of pipeline on a set of inputs Allow user to select multiple data sets for batch execution through UI Sep 28, 2015
@ArtPoon ArtPoon modified the milestones: 0.7 - user batching, 0.6 - API batching Sep 28, 2015
@donkirkby donkirkby removed the ready label Sep 28, 2015
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ArtPoon commented Oct 26, 2015

The plan is to use DataSet filtering to populate columns in a table that correspond to pipeline inputs. User selects groups (or single) DataSets for each pipeline input in the order of those inputs. Table rows are automatically propagated with combinations of DataSets up to the length of the largest group (see above comment).

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ArtPoon commented Feb 1, 2016

Subsumed by #488

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