Draft Gorilla gorilla (western gorilla)

[brianraymor]

Pending Issues

1. Waiting on ggordv to be submitted to OLS for use in references

Design

This draft design reflects additions to corresponding sections in schema 5.2.0. Reviewers are expected to be familiar with the CELLxGENE schema.

Editorial Notes that are inlined in the design below will not be surfaced in the schema.

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Required Ontologies

Ontology	OBO Prefix	Release	Download
Unavailable	GgorDv	Releases	TBD

Editorial Notes

This ontology is under active development. CELLxGENE pins ontology releases in each version of the schema. A specific release of the ontology above must be selected in the future.

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Required Gene Annotations

Organism	Source	Required version	Download
"NCBITaxon:9593" for Gorilla gorilla	ENSEMBL (Gorilla gorilla)	gorGor4 (GCA_000151905.3)	Gorilla_gorilla.gorGor4.113.gtf

Editorial Notes

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obs (Cell Metadata)

cell_type_ontology_term_id

No schema changes are required.

Editorial Notes

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development_stage_ontology_term_id

Key	development_stage_ontology_term_id
Annotator	Curator MUST annotate.
Value	categorical with str categories. If unavailable, this MUST be "unknown". If organism_ontolology_term_id is "NCBITaxon:9593" for Gorilla gorilla, this MUST be the most accurate descendant of GgorDv:0000000 for life cycle stage.

Editorial Notes

This may be outdated, but potential recommendations:

UBERON:0000104 life cycle
    UBERON:0000068 embryo stage
        UBERON:0000106 zygote stage
        UBERON:0000107 cleavage stage
            UBERON:0007232 2 cell stage
            UBERON:0007233 4 cell stage
            UBERON:0007236 8 cell stage
        UBERON:0000108 blastula stage
        UBERON:0000109 gastrula stage
        UBERON:0000110 neurula stage
        UBERON:0000111 organogenesis stage
            UBERON:0004707 pharyngula stage
        UBERON:0007220 late embryonic stage
    UBERON:0000092 post-embryonic stage
        UBERON:0000066 fully formed stage
            UBERON:0000112 sexually immature stage
                UBERON:0018685 nursing stage
                    UBERON:0007221 neonate stage
                        UBERON:0035946 start of neonate stage
                    UBERON:0034920 infant stage
                UBERON:0034919 juvenile stage
            UBERON:0000113 post-juvenile
                UBERON:0018241 prime adult stage
                UBERON:0007222 late adult stage
                    GgorDv:0000009 30-year-old stage (gorilla)
                    GgorDv:0000010 31-year-old stage (gorilla)
                    GgorDv:0000011 32-year-old stage (gorilla)
                    GgorDv:0000012 33-year-old stage (gorilla)
                    GgorDv:0000013 34-year-old stage (gorilla)
                    GgorDv:0000014 35-year-old stage (gorilla)
                    GgorDv:0000015 36-year-old stage (gorilla)
                    GgorDv:0000016 37-year-old stage (gorilla)
                    GgorDv:0000017 38-year-old stage (gorilla)
                    GgorDv:0000018 39-year-old stage (gorilla)
                    GgorDv:0000019 40-year-old stage (gorilla)
                    GgorDv:0000020 41-year-old stage (gorilla)
                    GgorDv:0000021 42-year-old stage (gorilla)
                    GgorDv:0000022 43-year-old stage (gorilla)
                    GgorDv:0000023 44-year-old stage (gorilla)
                    GgorDv:0000024 45-year-old stage (gorilla)
                    GgorDv:0000025 46-year-old stage (gorilla)
                    GgorDv:0000026 47-year-old stage (gorilla)
                    GgorDv:0000027 48-year-old stage (gorilla)
                    GgorDv:0000028 49-year-old stage (gorilla)
                    GgorDv:0000029 50-year-old stage (gorilla)
                    GgorDv:0000030 51-year-old stage (gorilla)
                    GgorDv:0000031 52-year-old and over stage (gorilla)

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disease_ontology_term_id

No schema changes are required.

Editorial Notes

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organism_ontolology_term_id

organism_ontolology_term_id is "NCBITaxon:9593" for Gorilla gorilla

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sex_ontology_term_id

No schema changes are required.

Editorial Notes

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tissue_ontology_term_id

No schema changes are required.

Editorial Notes

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Reference

BGEE