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Rscript is not installed properly. #24

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yxsee opened this issue Jul 14, 2023 · 1 comment
Open

Rscript is not installed properly. #24

yxsee opened this issue Jul 14, 2023 · 1 comment

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@yxsee
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yxsee commented Jul 14, 2023

Rscript version 4.3.0 fails all the Rscript checks in SCAFE.

Rscript --version
Rscript (R) version 4.3.0 (2023-04-21)

https://github.com/chung-lab/SCAFE/blob/90afd96279c51302ea31521622b468954cc54df7/scripts/scafe.tool.cm.filter#L716C2-L716C58

https://github.com/chung-lab/SCAFE/blob/90afd96279c51302ea31521622b468954cc54df7/scripts/scafe.tool.cm.annotate#L693C26-L693C26
@sarahhp
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sarahhp commented Mar 19, 2024

I have also run into this problem. The Rscript version message has changed between Rv3 and 4. If R v4 works fine, could you suggest a fix ?

@yxsee yxsee mentioned this issue Mar 19, 2024
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@sarahhp @yxsee