Failed to convert file 2018-recoveries/CTD/AT2_20170806_20180930_0304m_L2.ctd

[JessyBarrette]

The following files failed to be converted due to diverse reasons

• 2018-recoveries/CTD/AT2_20170806_20180930_0304m_L2.ctd

ERROR ForkPoolWorker-1:747 [code= "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 119; file="/data/ios_raw_files/mooring_data/2018-recoveries/CTD/AT2_20170806_20180930_0304m_L2.ctd"] Failed to convert file
Traceback (most recent call last):
  File "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 117, in unpack_file_convert_threads
    convert_files_threads(*inputs)
  File "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 133, in convert_files_threads
    if fdata.import_data():
  File "/home/cioos/cioos-siooc_data_transform/cioos_data_transform/cioos_data_transform/IosObsFile.py", line 1352, in import_data
    self.channels = self.get_channels()
  File "/home/cioos/cioos-siooc_data_transform/cioos_data_transform/cioos_data_transform/IosObsFile.py", line 487, in get_channels
    info["Minimum"] = [l[3] for l in ch]
  File "/home/cioos/cioos-siooc_data_transform/cioos_data_transform/cioos_data_transform/IosObsFile.py", line 487, in <listcomp>
    info["Minimum"] = [l[3] for l in ch]
IndexError: list index out of range

• 2018-recoveries/CTD/e01_20170714_20180623_0035m_L2.ctd

ERROR ForkPoolWorker-2:748 [code= "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 119; file="/data/ios_raw_files/mooring_data/2018-recoveries/CTD/e01_20170714_20180623_0035m_L2.ctd"] Failed to convert file
Traceback (most recent call last):
  File "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 117, in unpack_file_convert_threads
    convert_files_threads(*inputs)
  File "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 133, in convert_files_threads
    if fdata.import_data():
  File "/home/cioos/cioos-siooc_data_transform/cioos_data_transform/cioos_data_transform/IosObsFile.py", line 1357, in import_data
    self.channel_details = self.get_channel_detail()
  File "/home/cioos/cioos-siooc_data_transform/cioos_data_transform/cioos_data_transform/IosObsFile.py", line 468, in get_channel_detail
    raise Exception(
Exception: Unknown variable format Format:         , Type:   

• AMP2-D/CTD/sogn_20090401_20090715_0147m_L2.ctd

ERROR ForkPoolWorker-1:747 [code= "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 119; file="/data/ios_raw_files/mooring_data/AMP2-D/CTD/sogn_20090401_20090715_0147m_L2.ctd"] Failed to convert file
Traceback (most recent call last):
  File "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 117, in unpack_file_convert_threads
    convert_files_threads(*inputs)
  File "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 133, in convert_files_threads
    if fdata.import_data():
  File "/home/cioos/cioos-siooc_data_transform/cioos_data_transform/cioos_data_transform/IosObsFile.py", line 1357, in import_data
    self.channel_details = self.get_channel_detail()
  File "/home/cioos/cioos-siooc_data_transform/cioos_data_transform/cioos_data_transform/IosObsFile.py", line 468, in get_channel_detail
    raise Exception(
Exception: Unknown variable format Format: HH:MM:SS:SS, Type: T  

• WCTSS-C/CTD/cmp1_20160127_20160520_0193m.ctd
• WCTSS-C/CTD/cmp1_20160127_20160520_0298m.ctd

ERROR ForkPoolWorker-2:748 [code= "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 159; file="/data/ios_raw_files/mooring_data/WCTSS-C/CTD/cmp1_20160127_20160520_0193m.ctd"] Error: Unable to create netcdf file: /data/ios_raw_files/mooring_data/WCTSS-C/CTD/cmp1_20160127_20160520_0193m.ctd -> NetCDF: Name contains illegal characters
Traceback (most recent call last):
  File "/home/cioos/cioos-siooc_data_transform/projects/ios_data_transform/ios_data_transform_script.py", line 153, in convert_files_threads
    ds.to_netcdf(ncFileName)
  File "/home/cioos/anaconda3/envs/cioos_data_transform310/lib/python3.10/site-packages/xarray/core/dataset.py", line 1911, in to_netcdf
    return to_netcdf(  # type: ignore  # mypy cannot resolve the overloads:(
  File "/home/cioos/anaconda3/envs/cioos_data_transform310/lib/python3.10/site-packages/xarray/backends/api.py", line 1217, in to_netcdf
    dump_to_store(
  File "/home/cioos/anaconda3/envs/cioos_data_transform310/lib/python3.10/site-packages/xarray/backends/api.py", line 1264, in dump_to_store
    store.store(variables, attrs, check_encoding, writer, unlimited_dims=unlimited_dims)
  File "/home/cioos/anaconda3/envs/cioos_data_transform310/lib/python3.10/site-packages/xarray/backends/common.py", line 269, in store
    self.set_attributes(attributes)
  File "/home/cioos/anaconda3/envs/cioos_data_transform310/lib/python3.10/site-packages/xarray/backends/common.py", line 286, in set_attributes
    self.set_attribute(k, v)
  File "/home/cioos/anaconda3/envs/cioos_data_transform310/lib/python3.10/site-packages/xarray/backends/netCDF4_.py", line 451, in set_attribute
    self.ds.setncattr(key, value)
  File "src/netCDF4/_netCDF4.pyx", line 3025, in netCDF4._netCDF4.Dataset.setncattr
  File "src/netCDF4/_netCDF4.pyx", line 1742, in netCDF4._netCDF4._set_att
  File "src/netCDF4/_netCDF4.pyx", line 2014, in netCDF4._netCDF4._ensure_nc_success
AttributeError: NetCDF: Name contains illegal characters