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Hello, excited to use the R2Dtool. I am having trouble with the annotate function. I am running on a linux server, and compiled on rust 1.76.0
Command used:
r2d annotate --gtf Homo_sapiens.GRCh38.113.gtf --input r2_bed_m6a.bed > test.bed
Output error:
thread 'main' panicked at src/annotate.rs:185:47:
called Result::unwrap() on an Err value: ParseIntError { kind: InvalidDigit }
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace
I am able to reproduce this error on my macbook and while using the test data.
The text was updated successfully, but these errors were encountered:
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R2Dtool annotate error ls
R2Dtool annotate error
Nov 21, 2024
I have been able to use the deprecated Rscripts and have found that the outputs work fine with the remaining tools. Seems to just be an issue with the rust built annotate function. r2_bed_m6a.txt
Hello, excited to use the R2Dtool. I am having trouble with the annotate function. I am running on a linux server, and compiled on rust 1.76.0
Command used:
r2d annotate --gtf Homo_sapiens.GRCh38.113.gtf --input r2_bed_m6a.bed > test.bed
Output error:
thread 'main' panicked at src/annotate.rs:185:47:
called
Result::unwrap()
on anErr
value: ParseIntError { kind: InvalidDigit }note: run with
RUST_BACKTRACE=1
environment variable to display a backtraceI am able to reproduce this error on my macbook and while using the test data.
The text was updated successfully, but these errors were encountered: