Merge pull request #1633 from jni/gala

Add gala recipe

recipes/gala/meta.yaml

@@ -0,0 +1,72 @@
+{% set name = "gala" %}
+{% set version = "0.4.1" %}
+{% set sha256 = "63a844c6d6c6e6771426472b85a36624cb85e188d08b4c4593a672b4969a65d3" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  fn: {{ name }}-{{ version }}.tar.gz
+  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  skip: True  # [py < 35]
+  script: python setup.py install --single-version-externally-managed --record record.txt
+
+requirements:
+  build:
+    - python
+    - setuptools
+    - cython
+    - numpy x.x
+    - numpy >=1.11
+  run:
+    - python
+    - numpy x.x
+    - numpy >=1.11
+    - networkx
+    - h5py
+    - matplotlib
+    - scipy
+    - scikit-image
+    - scikit-learn
+    - viridis
+    - tqdm
+    - pyzmq
+
+test:
+  requires:
+    - pytest
+    - coverage
+    - nose
+    - pytest-cov
+  imports:
+    - gala.agglo
+    - gala.agglo2
+    - gala.evaluate
+    - gala.features.histogram
+  commands:
+    # looks like --ignore flags don't work with --pyargs. Comment out for now.
+    # - py.test --doctest-modules --pyargs gala --ignore gala/test_package.py --ignore gala/auto.py --ignore gala/segmentation_stitch.py --ignore gala/stack_np.py --ignore gala/valprob.py
+
+about:
+  home: https://github.com/janelia-flyem/gala
+  license_family: BSD
+  license: BSD 3-clause
+  # Uncomment line below when license.txt is added to PyPI source dist
+  # license_file: license.txt
+  summary: 'Automatic segmentation of electron microscopy volumes'
+
+  description: |
+    Gala is a Python library for performing and evaluating image segmentation,
+    distributed under the open-source, 3-clause BSD license. It implements the
+    algorithm described in Nunez-Iglesias et al., PLOS ONE, 2013.
+  doc_url: https://gala.readthedocs.org
+  dev_url: https://github.com/janelia-flyem/gala
+
+extra:
+  recipe-maintainers:
+    - jni