forked from open2c/cooler
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy path.zenodo.json
67 lines (67 loc) · 2.09 KB
/
.zenodo.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
{
"creators": [
{
"name": "Nezar Abdennur",
"affiliation": "MIT, Cambridge, MA, USA",
"orcid": "0000-0001-5814-0864"
},
{
"name": "Anton Goloborodko",
"affiliation": "MIT, Cambridge, MA, USA"
},
{
"name": "Maxim Imakaev",
"affiliation": "MIT, Cambridge, MA, USA"
},
{
"name": "Leonid Mirny",
"affiliation": "MIT, Cambridge, MA, USA"
}
],
"contributors": [
{
"name": "Peter Kerpedjiev",
"affiliation": "Harvard Medical School",
"type": "Other"
},
{
"name": "Geoffrey Fudenberg",
"affiliation": "UCSF",
"type": "Other"
},
{
"name": "Scott Oullette",
"affiliation": "Harvard Medical School",
"type": "Other"
},
{
"name": "Soo Lee",
"affiliation": "Harvard Medical School",
"type": "Other"
},
{
"name": "Hendrik Strobelt",
"affiliation": "Harvard",
"type": "Other"
},
{
"name": "Nils Gehlenborg",
"affiliation": "Harvard Medical School",
"type": "Other"
}
],
"keywords": [
"bioinformatics",
"genomics",
"Hi-C",
"sparse",
"matrix",
"format",
"Python",
"out-of-core"
],
"description": "<p>Cooler is a Python support library for .cool files: an efficient storage format for high resolution genomic interaction matrices.</p>\n\n<p>The cooler package aims to provide the following functionality:</p>\n\n<ul>\n\t<li>Build contact matrices at any genomic resolution.</li>\n\t<li>Query contact matrices.</li>\n\t<li>Export and visualize the data.</li>\n\t<li>Perform scalable out-of-core operations on the data.</li>\n\t<li>Provide a clean and well-documented Python API to interact with the data.</li>\n</ul>\n\n<p>Follow cooler development on GitHub.</p>",
"access_right": "open",
"license": "BSD-3-Clause",
"upload_type": "software"
}