FE-04.sparql

# SPARQL version: 1.1
# DIKB MP/NP version: 2015-10-09

PREFIX aoOld: <http://purl.org/ao/core/> # needed for AnnotationSet and item until the equivalent is in Open Data Annotation
PREFIX cnt: <http://www.w3.org/2011/content#>
PREFIX dailymed: <http://dbmi-icode-01.dbmi.pitt.edu/linkedSPLs/vocab/resource/>
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX dctypes: <http://purl.org/dc/dcmitype/>
PREFIX dikbD2R: <http://dbmi-icode-01.dbmi.pitt.edu/dikb/vocab/resource/>
PREFIX dikbEvidence: <http://dbmi-icode-01.dbmi.pitt.edu/dikb-evidence/DIKB_evidence_ontology_v1.3.owl#>
PREFIX gcds: <http://www.genomic-cds.org/ont/genomic-cds.owl#>
PREFIX mp: <http://purl.org/mp/> # namespace for micropublication
PREFIX ncbit: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
PREFIX oa: <http://www.w3.org/ns/oa#>
PREFIX pav: <http://purl.org/pav>
PREFIX poc: <http://dbmi-icode-01.dbmi.pitt.edu/mp/>
PREFIX sio: <http://semanticscience.org/resource/>
PREFIX siocns: <http://rdfs.org/sioc/ns#>
PREFIX swande: <http://purl.org/swan/1.2/discourse-elements#>


# List all the in vivo evidence(supporting or challenging) for claim X? 
## In this case, claim-11 is used as claim X

SELECT DISTINCT xsd:string(?source) as ?evidence_source ?modality
FROM <inferred-graph-oa-mp.xml>
WHERE 
{
      {?evidence mp:supports poc:ddi-spl-annotation-claim-11} UNION {?evidence mp:challenges poc:ddi-spl-annotation-claim-11} .

      ?evidence ?modality poc:ddi-spl-annotation-claim-11.
      
      ?method mp:supports ?evidence;
              rdf:type ?type.

      ?anItem oa:hasBody ?evidence;
	     oa:hasTarget ?aURN.

      ?aURN oa:hasSource ?source.   

      FILTER (!regex(?type, dikbEvidence:EV_EX_Met_Enz) && !regex(?type, dikbEvidence:EV_EX_Trans_Prot) && !regex(?type, dikbEvidence:Non_ ))
      FILTER regex(?type, dikbEvidence:)
}