pyscenic_r_environment.yml

name: pyscenic_r
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1
  - _openmp_mutex=4.5
  - _r-mutex=1.0.1
  - aiohttp=3.7.4.post0
  - apsw=3.34.0.r1
  - async-timeout=3.0.1
  - attrs=21.2.0
  - bcrypt=3.2.0
  - binutils_impl_linux-64=2.35.1
  - binutils_linux-64=2.35
  - bioconductor-annotationdbi=1.54.0
  - bioconductor-biobase=2.52.0
  - bioconductor-biocgenerics=0.38.0
  - bioconductor-biocparallel=1.26.0
  - bioconductor-biostrings=2.60.0
  - bioconductor-clusterprofiler=4.0.0
  - bioconductor-delayedarray=0.18.0
  - bioconductor-do.db=2.9
  - bioconductor-dose=3.18.0
  - bioconductor-enrichplot=1.12.0
  - bioconductor-fgsea=1.18.0
  - bioconductor-genomeinfodb=1.28.0
  - bioconductor-genomeinfodbdata=1.2.6
  - bioconductor-genomicranges=1.44.0
  - bioconductor-ggtree=3.0.1
  - bioconductor-go.db=3.13.0
  - bioconductor-gosemsim=2.18.0
  - bioconductor-graph=1.70.0
  - bioconductor-graphite=1.38.0
  - bioconductor-iranges=2.26.0
  - bioconductor-keggrest=1.32.0
  - bioconductor-mast=1.18.0
  - bioconductor-matrixgenerics=1.4.0
  - bioconductor-org.dm.eg.db=3.13.0
  - bioconductor-org.hs.eg.db=3.13.0
  - bioconductor-org.mm.eg.db=3.13.0
  - bioconductor-qvalue=2.24.0
  - bioconductor-reactome.db=1.76.0
  - bioconductor-reactomepa=1.36.0
  - bioconductor-s4vectors=0.30.0
  - bioconductor-singlecellexperiment=1.14.1
  - bioconductor-summarizedexperiment=1.22.0
  - bioconductor-treeio=1.16.1
  - bioconductor-xvector=0.32.0
  - bioconductor-zlibbioc=1.38.0
  - blas=1.1
  - boto3=1.17.102
  - botocore=1.20.102
  - brotlipy=0.7.0
  - bwidget=1.9.14
  - bzip2=1.0.8
  - c-ares=1.17.1
  - ca-certificates=2021.5.30
  - cachetools=4.2.2
  - cairo=1.16.0
  - certifi=2021.5.30
  - cffi=1.14.5
  - cgatcore=0.6.7
  - chardet=4.0.0
  - colormath=3.0.0
  - conda=4.10.2
  - conda-package-handling=1.7.3
  - coreutils=8.32
  - cryptography=3.4.7
  - curl=7.77.0
  - decorator=4.4.2
  - drmaa=0.7.9
  - font-ttf-dejavu-sans-mono=2.37
  - font-ttf-inconsolata=3.000
  - font-ttf-source-code-pro=2.038
  - font-ttf-ubuntu=0.83
  - fontconfig=2.13.1
  - fonts-conda-ecosystem=1
  - fonts-conda-forge=1
  - freetype=2.10.4
  - fribidi=1.0.10
  - ftputil=5.0.1
  - gcc_impl_linux-64=9.3.0
  - gcc_linux-64=9.3.0
  - gettext=0.21.0
  - gevent=21.1.2
  - gfortran_impl_linux-64=9.3.0
  - gfortran_linux-64=9.3.0
  - gmp=6.2.1
  - google-api-core=1.30.0
  - google-auth=1.32.0
  - google-cloud-core=1.7.1
  - google-cloud-sdk=346.0.0
  - google-cloud-storage=1.39.0
  - google-crc32c=1.1.2
  - google-resumable-media=1.3.1
  - googleapis-common-protos=1.53.0
  - graphite2=1.3.14
  - greenlet=1.1.0
  - grpcio=1.38.1
  - gsl=2.6
  - gxx_impl_linux-64=9.3.0
  - gxx_linux-64=9.3.0
  - harfbuzz=2.8.1
  - icu=68.1
  - idna=2.10
  - jbig=2.1
  - jmespath=0.10.0
  - jpeg=9d
  - kernel-headers_linux-64=2.6.32
  - krb5=1.19.1
  - ld_impl_linux-64=2.35.1
  - lerc=2.2.1
  - libarchive=3.5.1
  - libblas=3.9.0
  - libcblas=3.9.0
  - libcrc32c=1.1.1
  - libcurl=7.77.0
  - libdeflate=1.7
  - libedit=3.1.20210216
  - libev=4.33
  - libffi=3.3
  - libgcc-devel_linux-64=9.3.0
  - libgcc-ng=9.3.0
  - libgfortran-ng=9.3.0
  - libgfortran5=9.3.0
  - libglib=2.68.3
  - libgomp=9.3.0
  - libiconv=1.16
  - liblapack=3.9.0
  - libnghttp2=1.43.0
  - libopenblas=0.3.15
  - libpng=1.6.37
  - libprotobuf=3.17.2
  - libsodium=1.0.18
  - libsolv=0.7.18
  - libssh2=1.9.0
  - libstdcxx-devel_linux-64=9.3.0
  - libstdcxx-ng=9.3.0
  - libtiff=4.3.0
  - libuuid=2.32.1
  - libuv=1.41.0
  - libwebp-base=1.2.0
  - libxcb=1.14
  - libxml2=2.9.12
  - lz4-c=1.9.3
  - lzo=2.10
  - make=4.3
  - mamba=0.14.1
  - multidict=5.1.0
  - ncurses=6.2
  - networkx=2.5.1
  - nomkl=3.0
  - numpy=1.21.0
  - openblas=0.3.15
  - openssl=1.1.1k
  - packaging=20.9
  - pandas=1.2.5
  - pandoc=2.14.0.3
  - pango=1.48.5
  - paramiko=2.7.2
  - pcre=8.45
  - pcre2=10.36
  - pip=21.1.3
  - pixman=0.40.0
  - protobuf=3.17.2
  - pyasn1=0.4.8
  - pyasn1-modules=0.2.8
  - pycosat=0.6.3
  - pycparser=2.20
  - pynacl=1.4.0
  - pyopenssl=20.0.1
  - pyparsing=2.4.7
  - pysftp=0.2.9
  - pysocks=1.7.1
  - python=3.9.5
  - python-dateutil=2.8.1
  - python_abi=3.9
  - pytz=2021.1
  - pyu2f=0.1.5
  - pyyaml=5.4.1
  - r=4.1
  - r-abind=1.4_5
  - r-ape=5.5
  - r-aplot=0.0.6
  - r-askpass=1.1
  - r-assertthat=0.2.1
  - r-babelgene=21.4
  - r-backports=1.2.1
  - r-base=4.1.0
  - r-base64enc=0.1_3
  - r-bh=1.75.0_0
  - r-biocmanager=1.30.16
  - r-bit=4.0.4
  - r-bit64=4.0.5
  - r-bitops=1.0_7
  - r-blob=1.2.1
  - r-boot=1.3_28
  - r-brio=1.1.2
  - r-broom=0.7.8
  - r-bslib=0.2.5.1
  - r-cachem=1.0.5
  - r-callr=3.7.0
  - r-catools=1.18.2
  - r-cellranger=1.1.0
  - r-checkmate=2.0.0
  - r-class=7.3_19
  - r-cli=2.5.0
  - r-clipr=0.7.1
  - r-cluster=2.1.2
  - r-codetools=0.2_18
  - r-colorspace=2.0_2
  - r-commonmark=1.7
  - r-cowplot=1.1.1
  - r-cpp11=0.3.1
  - r-crayon=1.4.1
  - r-crosstalk=1.1.1
  - r-curl=4.3.2
  - r-data.table=1.14.0
  - r-dbi=1.1.1
  - r-dbplyr=2.1.1
  - r-deldir=0.2_10
  - r-desc=1.3.0
  - r-diffobj=0.3.4
  - r-digest=0.6.27
  - r-domc=1.3.7
  - r-downloader=0.4
  - r-dplyr=1.0.7
  - r-dqrng=0.3.0
  - r-dtplyr=1.1.0
  - r-ellipsis=0.3.2
  - r-evaluate=0.14
  - r-fansi=0.4.2
  - r-farver=2.1.0
  - r-fastmap=1.1.0
  - r-fastmatch=1.1_0
  - r-fitdistrplus=1.1_5
  - r-fnn=1.1.3
  - r-forcats=0.5.1
  - r-foreach=1.5.1
  - r-foreign=0.8_81
  - r-formatr=1.11
  - r-fs=1.5.0
  - r-futile.logger=1.4.3
  - r-futile.options=1.0.1
  - r-future=1.21.0
  - r-future.apply=1.7.0
  - r-gargle=1.1.0
  - r-gdata=2.18.0
  - r-generics=0.1.0
  - r-ggforce=0.3.3
  - r-ggplot2=3.3.5
  - r-ggplotify=0.0.7
  - r-ggraph=2.0.5
  - r-ggrepel=0.9.1
  - r-ggridges=0.5.3
  - r-globals=0.14.0
  - r-glue=1.4.2
  - r-goftest=1.2_2
  - r-googledrive=1.0.1
  - r-googlesheets4=0.3.0
  - r-gplots=3.1.1
  - r-graphlayouts=0.7.1
  - r-gridextra=2.3
  - r-gridgraphics=0.5_1
  - r-gtable=0.3.0
  - r-gtools=3.9.2
  - r-haven=2.4.1
  - r-hexbin=1.28.2
  - r-highr=0.9
  - r-hms=1.1.0
  - r-htmltools=0.5.1.1
  - r-htmlwidgets=1.5.3
  - r-httpuv=1.6.1
  - r-httr=1.4.2
  - r-ica=1.0_2
  - r-ids=1.0.1
  - r-igraph=1.2.6
  - r-irlba=2.3.3
  - r-isoband=0.2.4
  - r-iterators=1.0.13
  - r-jquerylib=0.1.4
  - r-jsonlite=1.7.2
  - r-kernsmooth=2.23_20
  - r-knitr=1.33
  - r-labeling=0.4.2
  - r-lambda.r=1.2.4
  - r-later=1.2.0
  - r-lattice=0.20_44
  - r-lazyeval=0.2.2
  - r-leiden=0.3.8
  - r-lifecycle=1.0.0
  - r-listenv=0.8.0
  - r-lmtest=0.9_38
  - r-lsei=1.3_0
  - r-lubridate=1.7.10
  - r-magrittr=2.0.1
  - r-markdown=1.1
  - r-mass=7.3_54
  - r-matrix=1.3_4
  - r-matrixstats=0.59.0
  - r-memoise=2.0.0
  - r-mgcv=1.8_36
  - r-mime=0.11
  - r-miniui=0.1.1.1
  - r-modelr=0.1.8
  - r-msigdbr=7.4.1
  - r-munsell=0.5.0
  - r-nlme=3.1_152
  - r-nnet=7.3_16
  - r-npsurv=0.5_0
  - r-openssl=1.4.4
  - r-parallelly=1.26.0
  - r-patchwork=1.1.1
  - r-pbapply=1.4_3
  - r-pheatmap=1.0.12
  - r-pillar=1.6.1
  - r-pkgbuild=1.2.0
  - r-pkgconfig=2.0.3
  - r-pkgload=1.2.1
  - r-plogr=0.2.0
  - r-plotly=4.9.4.1
  - r-plyr=1.8.6
  - r-png=0.1_7
  - r-polyclip=1.10_0
  - r-praise=1.0.0
  - r-prettyunits=1.1.1
  - r-processx=3.5.2
  - r-progress=1.2.2
  - r-promises=1.2.0.1
  - r-ps=1.6.0
  - r-purrr=0.3.4
  - r-r6=2.5.0
  - r-rann=2.6.1
  - r-rappdirs=0.3.3
  - r-rcolorbrewer=1.1_2
  - r-rcpp=1.0.6
  - r-rcppannoy=0.0.18
  - r-rcpparmadillo=0.10.5.0.0
  - r-rcppeigen=0.3.3.9.1
  - r-rcppparallel=5.1.4
  - r-rcppprogress=0.4.2
  - r-rcurl=1.98_1.3
  - r-readr=1.4.0
  - r-readxl=1.3.1
  - r-recommended=4.1
  - r-rematch=1.0.1
  - r-rematch2=2.1.2
  - r-reprex=2.0.0
  - r-reshape2=1.4.4
  - r-reticulate=1.20
  - r-rlang=0.4.11
  - r-rmarkdown=2.9
  - r-rocr=1.0_11
  - r-rpart=4.1_15
  - r-rprojroot=2.0.2
  - r-rspectra=0.16_0
  - r-rsqlite=2.2.5
  - r-rstudioapi=0.13
  - r-rsvd=1.0.5
  - r-rtsne=0.15
  - r-rvcheck=0.1.8
  - r-rvest=1.0.0
  - r-sass=0.4.0
  - r-scales=1.1.1
  - r-scattermore=0.7
  - r-scatterpie=0.1.6
  - r-sctransform=0.3.2
  - r-selectr=0.4_2
  - r-seurat=4.0.3
  - r-seuratobject=4.0.2
  - r-shadowtext=0.0.8
  - r-shiny=1.6.0
  - r-sitmo=2.0.1
  - r-snow=0.4_3
  - r-sourcetools=0.1.7
  - r-spatial=7.3_14
  - r-spatstat=2.2_0
  - r-spatstat.core=2.2_0
  - r-spatstat.data=2.1_0
  - r-spatstat.geom=2.2_0
  - r-spatstat.linnet=2.2_1
  - r-spatstat.sparse=2.0_0
  - r-spatstat.utils=2.2_0
  - r-stringi=1.6.2
  - r-stringr=1.4.0
  - r-survival=3.2_11
  - r-sys=3.4
  - r-tensor=1.5
  - r-testthat=3.0.3
  - r-tibble=3.1.2
  - r-tidygraph=1.2.0
  - r-tidyr=1.1.3
  - r-tidyselect=1.1.1
  - r-tidytree=0.3.4
  - r-tidyverse=1.3.1
  - r-tinytex=0.32
  - r-triebeard=0.3.0
  - r-tweenr=1.0.2
  - r-urltools=1.7.3
  - r-utf8=1.2.1
  - r-uuid=0.1_4
  - r-uwot=0.1.10
  - r-vctrs=0.3.8
  - r-viridis=0.6.1
  - r-viridislite=0.4.0
  - r-waldo=0.2.5
  - r-whisker=0.4
  - r-withr=2.4.2
  - r-xfun=0.24
  - r-xml2=1.3.2
  - r-xtable=1.8_4
  - r-yaml=2.2.1
  - r-zeallot=0.1.0
  - r-zoo=1.8_9
  - readline=8.1
  - reproc=14.2.1
  - reproc-cpp=14.2.1
  - requests=2.25.1
  - rsa=4.7.2
  - ruamel_yaml=0.15.100
  - ruffus=2.8.4
  - s3transfer=0.4.2
  - sed=4.8
  - setuptools=52.0.0
  - six=1.16.0
  - spectra=0.0.11
  - sqlalchemy=1.4.20
  - sqlite=3.36.0
  - sysroot_linux-64=2.12
  - time=1.8
  - tk=8.6.10
  - tktable=2.10
  - tqdm=4.61.1
  - typing-extensions=3.10.0.0
  - typing_extensions=3.10.0.0
  - tzdata=2021a
  - urllib3=1.26.6
  - wheel=0.36.2
  - xorg-kbproto=1.0.7
  - xorg-libice=1.0.10
  - xorg-libsm=1.2.3
  - xorg-libx11=1.7.2
  - xorg-libxext=1.3.4
  - xorg-libxrender=0.9.10
  - xorg-libxt=1.2.1
  - xorg-renderproto=0.11.1
  - xorg-xextproto=7.3.0
  - xorg-xproto=7.0.31
  - xz=5.2.5
  - yaml=0.2.5
  - yarl=1.5.1
  - zlib=1.2.11
  - zope.event=4.5.0
  - zope.interface=5.4.0
  - zstd=1.5.0
prefix: /home/medawar/lgarner/conda/envs/pyscenic_r