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Dn/Ds analyses #86

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ebrintn opened this issue Sep 8, 2023 · 3 comments
Open

Dn/Ds analyses #86

ebrintn opened this issue Sep 8, 2023 · 3 comments
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ebrintn commented Sep 8, 2023

  1. Estimating theta at low values of theta showing that what goes in comes out
  2. Estimations of dN/dS at different values of theta - works with the populations of dN/dS paper. Should have good estimates of dN/dS at low values of theta and poorer values at higher values of theta
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ebrintn commented Sep 8, 2023

Depending on effect of theta in number 2 - might focus on tree depth on dN/dS estimates

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ebrintn commented Aug 7, 2024

Show that dN/dS at neutral with small mutation rate merges to 1 with 1000 bootstrap replicates.

@ebrintn ebrintn changed the title Analyses for paper Dn/Ds analyses Aug 7, 2024
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ebrintn commented Sep 30, 2024

Currently running with neutral @afarineshp, @jasondk. Which other mutation rates should we run at for the paper?

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