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CHANGELOG.rst

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Changelog

v1.0 (2022-03-29)

TL,DR: these things will break your code with v1.0:

  • Python version < 3.8
  • The gtis keyword in pulse/pulsar.py (it is now gti, without the 's')

New

  • Dropped support to Python < 3.8
  • Multi-taper periodogram, including a Lomb-Scargle implementation for non-uniformly sampled data
  • Create count-rate spectrum when calculating spectral-timing products
  • Make modlation upper limit in (Averaged)Powerspectrum work with any normalization (internally converts to Leahy for the calculation)
  • Implement Gardner-Done normalization (1 for perfect correlation, -1 for perfect anticorrelation) for Auto/Crosscorrelation
  • New infrastructure for converting EventList and LightCurve objects into Astropy TimeSeries
  • New infrastructure for converting most Stingray classes into Astropy Table objects, Xarray and Pandas data frames.
  • Save and load of most Stingray classes to/from many different file formats (pickle, ECSV, HDF5, FITS, and all formats compatible with Astropy Table)
  • Accept input EventList in DynamicalPowerSpectrum
  • New stingray.fourier module containing the basic timing products, usable on numpy arrays, and centralizes fft import
  • New methods in Crossspectrum and Powerspectrum to load data from specific inputs: from_events, from_lightcurve, from_time_array, from_lc_list (from_time_array was also tested using memory-mapped event lists as inputs: useful in very large datasets)
  • New and improved spectral timing methods: ComplexCovarianceSpectrum, CovarianceSpectrum, LagSpectrum, RmsSpectrum
  • Some deprecated features are now removed
  • PSDLogLikelihood now also works with a log-rebinned PDS

Improvements

  • Performance on large data sets is VASTLY improved
  • Lots of performance improvements in the AveragedCrossspectrum and AveragedPowerspectrum classes
  • Standardized use of new fast psd/cs algorithm, with legacy still available as an alternative option to specify
  • Reading calibrated photon energy from event files by default
  • In pulse/pulsar.py, methods use the keyword gti instead of gtis (for consistency with the rest of Stingray)
  • Moved CovarianceSpectrum` to ``VarEnergySpectrum and reuse part of the machinery
  • Improved error bars on cross-spectral and spectral timing methods
  • Measure absolute rms in RmsEnergySpectrum
  • Friendlier pyfftw warnings
  • Streamline PDS/CrossSp production, adding from_events, from_lc, from_lc_iterable, and from_time_array (to input a numpy array) methods
  • PDS/CrossSp initially store the unnormalized power, and convert it on the fly when requested, to any normalization

Bug fixes

  • Fixed error bars and err_dist for sliced (iterated) light curves and power spectra
  • Fixed a bug in how the start time when applying GTIs (now using the minimum value of the GTI array, instead of half a time bin below the minimum value)
  • Fixed a bug in which all simulator errors were incorrectly non-zero
  • Fixed coherence uncertainty
  • Documented a Windows-specific issue when large count rate light curves are defined as integer arrays (Windows users should use float or specify int-64)
  • If the variance of the lightcurve is zero, the code will fail to implement Leahy normalization
  • The value of the PLEPHEM header keyword is forced to be a string, in the rare cases that it's a number
  • and more!

Full list of changes

v1.0beta was released on 2022-02-25.

v0.3 (2021-05-31)

  • Lots of performance improvements
  • Faster simulations
  • Averaged Power spectra and Cross spectra now handle Gaussian light curves correctly
  • Fixes in rebin functions
  • New statistical functions for signal detection in power spectra and pulsar search periodograms
  • Much improved FTOOL-compatible mission support
  • New implementation of the FFTFIT method to calculate pulsar times of arrival
  • H-test for pulsar searches
  • Z^2_n search adapted to binned and normally distribute pulse profiles
  • Large data processing (e.g. from NICER) allowed
  • Rebinning function now accepts unevenly sampled data
  • New saving and loading from/to Astropy Tables and Timeseries
  • Improved I/O to ascii, hdf5 and other formats
  • Rehaul of documentation

Full list of changes

v0.2 (2020-06-17)

  • Added Citation info
  • Fixed various normalization bugs in Powerspectrum
  • Speedup of lightcurve creation and handling
  • Made code compatible with Python 3.6, and dropped support to Python 2.7
  • Test speedups
  • Dead time models and Fourier Amplitude Difference correction
  • Roundtrip of LightCurve to lightkurve objects
  • Fourier-domain accelerated search for pulsars
  • Adapt package to APE-17
  • Periodograms now also accept event lists (instead of just light curves)
  • Allow transparent MJDREF change in event lists and light curves

Full list of changes

v0.1.3 (2019-06-11)

  • Bug fixes

v0.1.2

  • Bug fixes

v0.1.1

  • Bug fixes

v0.1 (2019-05-29)

  • Initial release.