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Problem with empty Chimeric junction files #8

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CDieterich opened this issue Jun 1, 2016 · 0 comments

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CDieterich commented Jun 1, 2016

line 80 in fix2chimera.py
if len(inputfile.readline().split('\t')[field-1].split('.')[-1]) == 1:

this dies if Chimeric junction file is empty.

tjakobi self-assigned this

tjakobi mentioned this issue

empty chimeric.junction files #2

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tjakobi changed the title ~~Problem with empty~~ Problem with empty Chimeric junction files

tjakobi closed this as completed in

57b81a1

farzamani mentioned this issue

Skipping circRNA detection module if Chimeric.junction.out is empty jakobilab/circtools#6

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