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PhyloRank can't calculate RED #21

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helloacc opened this issue Nov 22, 2022 · 1 comment
Open

PhyloRank can't calculate RED #21

helloacc opened this issue Nov 22, 2022 · 1 comment

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@helloacc
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helloacc commented Nov 22, 2022 •
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  • When I calculate the RED values , PhyloRank can't recognize taxa information. Even though I used the example_data, I still got an error.

  • But when I use the decoration function, there is no problem.
@donovan-h-parks
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Hi,

PhyloRank calculates RED by rooting a tree on each phyla with at least 2 classes. It is a requirement that your tree have at least 2 such phyla. In general, PhyloRank is meant to be run on a domain wide tree where there are multiple phyla meeting this requirement.

Cheers,
Donovan

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@donovan-h-parks @helloacc